Generated: Wed Mar 17 04:15:07 2004
2004-02-26 19:55 sheeler
* source/driver/end_flash.F90: calling necessary update block count
for perfmon
2004-02-26 17:39 sheeler
* source/util/tools/compiler_flags.c: some compiler was complaining
about converting a pointer to an integer when using NULL instead of
'\0', so I'm changing it.
2004-02-26 16:50 sheeler
* source/io/amr/hdf5_parallel/h5_parallel_read.c: all procs now
read the timers dataset. before, only the master proc read the
dataset but all procs called init_timers_from_previous, so the
non-master procs got some bogus, empty timers.
2004-02-26 16:47 sheeler
* source/io/amr/hdf5_parallel/checkpoint.F90: we now call
init_timers at the end of reading the checkpoint file.
2004-02-26 16:46 sheeler
* source/util/tools/perfmon.F90: adding update_global_block_count
to the public interface because it does an mpireduce in which all
procs participate and that needs to be called externally by
checkpoint routines.
also now printing the number of evolved zones correctly
2004-02-26 16:44 sheeler
* source/io/amr/hdf5_serial/checkpoint.F90: having all procs read
in and initialize their timers from the checkpointed timers
2004-02-26 16:07 weirs
* source/driver/: init_flash_new1.F90, init_flash_new2.F90:
Replaced init_flash.F90 by init_flash_new1.F90; removing
init_flash_new1.F90 and init_flash_new2.F90 to clean up.
2004-02-26 16:05 weirs
* source/util/tools/get_opt_new.F90: Replaced get_opt.F90 by
get_opt_new.F90; removing get_opt_new.F90 to clean up.
2004-02-26 16:02 weirs
* source/driver/init_flash.F90: Commiting Anshu's changes for
treating command line arguments. Now accept -chk_file
checkpoint.file and -par_file flash.par.file on the command line,
other arguments are ignored.
The behavior is now as follows: 1.) If neither flag (-chk_file,
-par_file) is found, read flash.par and initialize as directed in
that file. For restart=.true. in the flash.par file, the runtime
parameters are as specified in flash.par.
2.) If -par_file is found, the argument following the flag is used
in place of the flash.par file but behavior is otherwise the same
as in 1.)
3.) If -chk_file is found, the following argument is the filename
of the checkpoint file to be read. restart=.true. is assumed, and
the runtime parameters are as set in the _checkpoint_ file, and
flash.par is ignored.
4.) If both -chk_file and -par_file are present, the behavior is as
in 3.) and the file specified through -par_file is ignored, as is
flash.par.
2004-02-26 15:50 weirs
* source/util/tools/logfile.F90: In create_logfile, get values for
Master_PE and My_P at the beginning; otherwise they are accessed
before being initialized.
2004-02-26 15:48 weirs
* source/util/tools/get_opt.F90: Modified get_opt to accept a
string argument, rather than just a character. Also, string must
stand alone; string embedded in other characters will not be found.
(This is the desired behavior.)
2004-02-26 13:29 freis
* source/driver/end_flash.F90: cleaned up code and formatted output
2004-02-26 10:49 freis
* source/util/tools/perfmon.F90: added new performance summary to
datalog logfile
2004-02-25 13:46 sheeler
* source/util/tools/perfmon.F90: another reason it was hanging
fixed.
2004-02-25 10:24 sheeler
* source/io/amr/hdf5_serial/checkpoint.F90: every processor has to
call log_timers so that they can add up zones
2004-02-25 10:21 freis
* source/util/tools/: logfile.F90, perfmon.F90: adjust output
formats to logfile
2004-02-24 17:56 sheeler
* source/util/tools/perfmon.F90: re-adding the global evolved
blocks number.
2004-02-24 11:21 freis
* source/: driver/end_flash.F90, util/tools/Makefile,
util/tools/logfile.F90, util/tools/perfmon.F90: changed performance
summary call to perfmon module
2004-02-23 15:09 sheeler
* source/util/tools/perfmon.F90: properly collecting block counts,
saving them as zones and restoring them from the checkpoint
correctly
2004-02-23 13:38 freis
* source/util/tools/perfmon.F90: added a temporary stub to change
logging routine of perfmon_summary
2004-02-23 09:51 freis
* source/util/tools/dump_summary.F90: temporary subroutine to write
perfmon_summary to logfile
2004-02-22 18:02 sheeler
* source/io/amr/hdf5_serial/h5_read.c: closing the elapsed time
attribute
2004-02-22 18:02 sheeler
* source/io/amr/hdf5_parallel/: checkpoint.F90, h5_parallel_read.c,
h5_parallel_write.c: adding evolved zones to io
2004-02-22 17:28 sheeler
* source/io/amr/hdf5_serial/h5_write.c: removing debugging print
statement
2004-02-22 17:09 sheeler
* source/io/amr/hdf5_serial/: checkpoint.F90, h5_read.c,
h5_write.c: adding number of evolved zones to io
2004-02-22 17:05 sheeler
* source/util/tools/perfmon.F90: adding logging of number of
evolved zones
2004-02-19 15:41 sheeler
* source/io/output.F90: fixed type ppfilter
2004-02-19 15:41 sheeler
* source/io/output_initial.F90: fixed typo (ppfilter)
2004-02-19 15:15 sheeler
* source/io/amr/hdf5_parallel/: checkpoint.F90, h5_parallel_read.c,
h5_parallel_write.c: adding elpased time to timer data so that
perfmon can figure out how long it's been running
2004-02-19 15:13 sheeler
* source/io/amr/hdf5_serial/h5_read.c: close the attribute.
2004-02-19 14:38 sheeler
* source/io/amr/hdf5_serial/checkpoint.F90: now reading in previous
elapsed time and initializing perfmon using it
2004-02-19 14:37 sheeler
* source/io/amr/hdf5_serial/h5_read.c: now reading in the elapsed
time data value
2004-02-19 14:36 sheeler
* source/io/amr/hdf5_serial/h5_write.c: now writing the perfmon
elapsed time as an attribute of the timers data set
2004-02-19 14:34 sheeler
* source/util/tools/perfmon.F90: getting rid of the "run time"
timer and adding a variable to store previous elapsed time that
gets passed to checkpoint for storage and retrieval.
2004-02-18 15:15 jbgallag
* setups/wd_def/flash.par.2d_cyl_off-center_particles: dded the 3
particle plotting runtime parameters. pptype = .false. which means
dump data to a single file. ppfilter = .false. which means no
filter being used , use ptplot. ptplot is the time elapsed in
seconds between dumps of particle data
2004-02-18 15:11 jbgallag
* source/io/Config: nged the runtime parameters name pptype_filter
to ppfilter
2004-02-18 15:10 jbgallag
* source/io/output_initial.F90: made changes for output_initial to
use the 3 particle plotting runtime paramemters to determine how
and when particle plot should be called
2004-02-18 15:10 jbgallag
* source/io/output.F90: made change for output to use the 3
particle plotting runtime parameters (ptplot, ppfilter, and pptye)
to determine when and how to call particleplot
2004-02-18 15:08 jbgallag
* source/io/amr/hdf5_parallel/h5_parallel_write_particles.c: this
routine actually does the particle writing. There are two routines
one for writing multiple plotfiles and one for writing to a single
plotfile
2004-02-18 15:08 jbgallag
* source/io/amr/hdf5_parallel/particleplot.F90: have added the full
functionality of particle plotfiles. With 3 runtime parameters one
can control whether or not multiple or single files or used (pptype
true = multi false = single) Whether or not dump is based on
simulation time (ptplot > 0e0) or a filter (ppfilter = .true.) This
routine determines which of the situations is the case and call the
appropriate call in h5_parallel_write_particles
2004-02-18 15:06 jbgallag
* source/io/amr/hdf5_parallel/h5_file_interface.c: added
h5_open_file_for_rw call, this is for the single particle plot
file.
2004-02-18 11:31 weirs
* setups/shockcyl_3d/: Config, flash.par, init_block.F90:
shockcyl_3d can now handle both 2d and 3d, single cylinder cases.
It incorporates developments from the (2d) 1cyl problem, namely an
option to initialize the SF6 from a smooth fit of the 1cyl_img
data, as opposed to reading the image file itself and interpolating
(which is still an option). If it was not available before, the
'ref_rectangle' strategy for forcing refinement to the maximum
level in a region around the sf6 has also been added.
In 3d, all xy planes are initialized identically, as specified for
the 2d case. There is an option to add a z-velocity, proportional
to the initial mass fraction of sf6. (We recommend periodic bc's
in the z-direction for this case, and relatively low vz compared to
the shock velocity.)
Truly 3d initial conditions will probably be added.
2004-02-17 17:29 kmriley
* source/mesh/amr/paramesh3.0/Makefile: clearing out extra link for
init_paramesh_arrays
2004-02-17 16:49 calder
* setups/wd_def/init_from_scratch.F90: Added a modified version of
init_from_scratch.F90 that has a call to the
UpdateParticleAttributes routines. Note that this version differs
from the main version by only two lines, and soon I will make the
change to the main version.
2004-02-17 16:38 calder
* setups/wd_def/UpdateParticleAttributes.F90: Minor change- bagged
a debug write statement.
2004-02-17 14:34 calder
* setups/wd_def/: UpdateParticleAttributes.F90, user_part.F90:
Added the custom version of UpdateParticleAttributes.F90 to the
setup directory.
2004-02-17 13:45 freis
* source/util/tools/logfile.F90: added formats to new perfmon
summary output
2004-02-17 12:08 calder
* source/io/: Makefile, output.F90, output_final.F90,
output_initial.F90, user_part.F90: Moving the particle attributes
stuff to the AdvanceParticles routines. That means removing the
user_part stuff from /souce/io
2004-02-17 00:48 sheeler
* source/solvers/poisson/multigrid/isobnd_mpole/poisson.F90: this
now has the driver for isolated boundary conditions.
2004-02-17 00:45 sheeler
* source/solvers/poisson/multigrid/isobnd_mpole/Config: declaring
the isolated boundary variables here, where they're needed.
2004-02-17 00:44 sheeler
* source/solvers/poisson/multigrid/poisson.F90: moving support for
isolated boundaries down one level to isobnd_mpole
2004-02-17 00:41 sheeler
* source/mesh/solvers/multigrid/mg_cycle.F90: moved the v-cycle
routines 1 level deeper.
2004-02-17 00:38 sheeler
* source/mesh/solvers/multigrid/multigrid.F90: I've changed the
interface to the multigrid routine as part of moving flash variable
definitions around. before, poisson.F90 got all the indecies and
passed them into the multigrid routine, now multigrid routines get
them as they need them.
2004-02-17 00:36 sheeler
* source/mesh/solvers/multigrid/Config: I've renamed some variables
and removed 4 from this spot. 2 are declared in the new module,
pre_and_post_smoothing_v_cycle which needs 2 as temporary storage.
The other 2 are moved to solvers/poisson/multigrid/isobnd_mpole
because that's where they're really needed, and if someone's using
the mgrid solver without doing poisson's equation in the isolated
bc case, he probably doesn't want 2 extra variables.
2004-02-16 18:01 calder
* setups/wd_def/user_part.F90: Added the custom version of the
user_part routine for the wd_def setup. The routine update the
density and temperature attributes for the particles. It also
updates the "old" attributes, which are the attributes against
which to measure change for the particle I/O filter. Work remains
to be done on these for the filter.
2004-02-16 17:56 calder
* source/io/: Makefile, output.F90, output_final.F90,
output_initial.F90, user_part.F90:
Added a routine to update particle attributes. The routine,
user_part, plays the same role as user_var does for normal
(non-particle) variables. Right now it is called before all calls
to output routines, including checkpoints. Once the 'filter' is in
place for particle plot files, then it will most likely be called
just before particle plot file calls.
2004-02-16 11:35 calder
* setups/wd_def/Config.2d_cyl_particles: more work on parameters
for particle attributes
2004-02-16 10:50 freis
* source/util/tools/logfile.F90: provided a stub to dump a string
array with new perfmon summary data into logfile
2004-02-16 10:16 calder
* setups/wd_def/Config.2d_cyl_particles: Added a parameter for
number of tracer particles.
2004-02-13 14:04 freis
* source/sites/Prototypes/AIX/: Makefile.h, Makefile.h.in: cleaned
up Makefile.h files
2004-02-13 10:21 freis
* source/sites/cube.asci.uchicago.edu/: Makefile.h, Makefile.h-32,
Makefile.h-64: cleaned up Makefile.h files
2004-02-13 10:08 freis
* source/sites/: flashviz.uchicago.edu/Makefile.h,
sphere.uchicago.edu/Makefile.h: cleaned up Makefile.h file
2004-02-12 20:48 tomek
* source/sites/cetus.asci.uchicago.edu/Makefile.h-nag: NAG f95 5.0
makefile. FLASH compiles, but I did not manage to get it running
correctly. mpich needs adding iargc/getarg to farg.f.
2004-02-12 17:46 jbgallag
* source/io/amr/hdf5_parallel/checkpoint.F90: took the
h5_write_timers call out of the MyPE == 0 if statement. File view
must be the same across all processes in parallel i/o!
2004-02-12 17:36 ricker
* source/source_terms/cool/sutherland_dopita/: Makefile,
tstep_cool.F90: Bug fixes. Didn't initialize firstCall or dt_temp,
and didn't set rho or gamma (saved in CoolDataModule). Also
changed loop limits to only compute cooling time in block interior.
2004-02-12 17:17 jbgallag
* source/sites/flashviz.uchicago.edu/Makefile.h: making flashviz
hdf5 version 1.4.3, last good one for us stillvi Makefile.h!
2004-02-12 16:21 calder
* setups/wd_def/: Config.2d_cyl_particles,
flash.par.2d_cyl_off-center_particles: Added config file and a
flash.par for particles.
2004-02-12 14:01 freis
* source/sites/: gin.asci.uchicago.edu/Makefile.h,
intel_gin.asci.uchicago.edu/Makefile.h,
lahey_gin.asci.uchicago.edu/Makefile.h: cleaned up Makefile.h files
2004-02-12 13:10 freis
* source/sites/: sphere.uchicago.edu/Makefile.h,
sunspot.uchicago.edu/Makefile.h,
thera.asci.uchicago.edu/Makefile.h,
wimbley.asci.uchicago.edu/Makefile.h,
zohar.uchicago.edu/Makefile.h: cleaned up Makefile.h files
2004-02-12 11:43 tomek
* source/sites/cetus.asci.uchicago.edu/: Makefile.h-ifc60,
Makefile.h-nag: Replaced Intel ifc with ifc60 and added support for
NAG f95 compiler.
2004-02-12 11:30 tomek
* source/sites/cetus.asci.uchicago.edu/Makefile.h-ifc: Intel ifc
makefile to be replaced by ifc60.
2004-02-11 19:13 jbgallag
* source/driver/init_flash.F90: re-added particle file number
stuff, don't know why Anshu took it out
2004-02-11 09:54 freis
* source/sites/sphere.uchicago.edu/: Makefile.h,
Makefile.h.profiling: cosmetic cleanup to Makefile.h
2004-02-09 12:23 weirs
* setups/shockcyl_3d/: Config, flash.par, init_block.F90,
mark_grid_refinement.F90: Replace these files with those from 1cyl
setup, which implements "smoothed fit" to SF6 experimental data.
Then allow to run 2D or 3D cases. Hopefully, this shockcyl setup
will be used for all shock-cylinder interactions, 2D and 3D, one or
multiple cylinders, smoothed fits or reading experimental image
files directly.
2004-02-09 11:11 freis
* source/util/tools/logfile.F90: added printing routines to include
compiler flags in logfile
2004-02-09 11:10 freis
* bin/setup.py, source/util/tools/Makefile,
source/util/tools/compiler_flags.c: added compiler flag dump to be
included in logfile; setup.py creates two files with the flag
string in ./object/ that are retrieved by compiler_flags.c
2004-02-06 18:13 tomek
* source/hydro/explicit/shock_detect.F90: Add support for 2-D polar
and 3-D cylindrical geometry.
2004-02-06 18:12 tomek
* source/source_terms/burn_nse/FlameModelModule.F90: Save on
reinitilization of the shock indicator.
2004-02-06 17:25 tomek
* setups/wd_def/: Config.1d_sph, Config.2d_cyl, Config.3d_car: Add
n_pert across configurations.
2004-02-06 15:14 kantypas
* source/io/amr/ncmpi/: ncmpi_file_interface.c,
ncmpi_parallel_read.c, ncmpi_parallel_write_single.c: checked
status variable -- if < 0 (fail) call abort_flash()
2004-02-06 14:57 caceres
* source/sites/cvs.asci.uchicago.edu/Makefile.h: cvs->flash
2004-02-06 12:10 tomek
* setups/wd_def/: flash.par.1d_sph_center, flash.par.2d_cyl_center,
flash.par.2d_cyl_off-center: Add updated 1-d spherical model;
cosmetic changes to cylindrical setups.
2004-02-06 12:06 tomek
* setups/wd_def/flash.par.1d_sph: Replaced by 1d_sph_center.
2004-02-06 12:02 tomek
* setups/wd_def/: flash.par.2d_cyl_center,
flash.par.2d_cyl_off-center: Updated versions for 2-D models in
cylindrical geometry.
2004-02-06 11:52 tomek
* setups/wd_def/flash.par.2d_cyl: Replaced by center and off-center
versions.
2004-02-06 10:51 tomek
* setups/wd_def/flash.par.3d_car: We have three different versions
in 3-D and no generic 3-D cartesian file seems to be necessary.
2004-02-05 18:11 caceres
* tools/scripts/FlashStack.py: Modified regex to better deal with
if (blah) return !blah blah
and
300 return !blah blah
2004-02-05 17:53 kantypas
* source/io/amr/ncmpi/ncmpi_parallel_write.c: checked status
variable -- if < 0 (fail) call abort_flash()
2004-02-05 16:13 tomek
* setups/wd_def/: Config, flash.par.3d_car_center, init_block.F90,
flash.par.3d_car_octant, flash.par.3d_car_off-center: Add n_pert
runtime parameter to control pattern of random velocity
perturbations. Modify and homogeneize parameter files for 3-D
simulations.
2004-02-05 12:51 tomek
* source/hydro/explicit/split/ppm/hydro_1d.F90: Filter species
normalization through EOSweight. Reorganize this part of the code.
Other cosmetic changes.
2004-02-05 08:53 tomek
* source/hydro/explicit/split/ppm/rieman.F90: ionmax is not needed.
2004-02-04 19:55 sheeler
* source/io/amr/hdf5_parallel/checkpoint.F90: writing timers at end
of checkpoint
2004-02-04 19:49 sheeler
* source/driver/init_flash.F90: just reset the io timer if this is
not a restart run. otherwise, we lose the io timer data re-read
from the checkpoint, and more subtly, we lose the io time that
happens in output_initial that would be the output had the run kept
going.
2004-02-04 19:41 sheeler
* source/io/output_initial.F90: get rid of timer in output_initial
because we don't want this to count towards io time anyway.
2004-02-04 19:40 sheeler
* source/io/amr/hdf5_serial/checkpoint.F90: moving writing of
timers to end of checkpoint.
2004-02-04 15:50 kantypas
* source/io/amr/hdf5_serial/: h5_write.c, h5_write_single.c,
h5_file_interface.c: removed various compiler warnings, unused
variables, added lib, etc
2004-02-04 14:42 freis
* source/sites/Prototypes/IRIX64/: Makefile.h, Makefile.h.in:
cleaned up makefiles
2004-02-04 14:25 freis
* source/sites/Prototypes/AIX/: Makefile.h, Makefile.h.in: cleaned
up makefiles
2004-02-04 12:03 kantypas
* source/io/amr/hdf5_serial/h5_write.c: removed various compiler
warnings, unused variables etc
2004-02-04 10:59 freis
* source/util/tools/logfile_request.F90: fixed formatting error in
logfile_writer that printed all context parameter values as reals
2004-02-03 19:55 tomek
* setups/wd_def/wr_integrals.F90: By mistake took internal energy
for total energy in calculation of the binding energy. Do not trust
previous flash.dat output blindly! We are still missing pdV
contribution to the energy.
2004-02-03 18:55 kantypas
* source/io/amr/hdf5_parallel/: h5_parallel_write.c,
h5_parallel_write_single.c: removed various compiler warnings,
unused variables - etc
2004-02-03 18:53 kantypas
* source/io/amr/hdf5_parallel/h5_file_interface.c: checked status
and ierr variables -- if < 0 (fail) call abort_flash()
2004-02-03 18:34 tomek
* setups/wd_def/Config: Add comment on configuring with the hybrid
flame/network scheme.
2004-02-03 18:26 tomek
* source/source_terms/burn_nse/FlameModelModule.F90: Store nuclear
energy generation rate in unk(enuc). Other cosmetic changes.
2004-02-03 18:22 kantypas
* source/io/amr/hdf5_parallel/h5_parallel_read.c: checked status
and ierr variables -- if < 0 (fail) call abort_flash()
2004-02-03 16:20 ricker
* source/source_terms/cool/sutherland_dopita/tstep_cool.F90: Added
cooling time-based timestep limiter to Sutherland & Dopita module.
2004-02-03 14:34 kantypas
* source/io/amr/hdf5_parallel/h5_parallel_write_single.c: checked
status and ierr variables -- if < 0 (fail) call abort_flash()
2004-02-03 10:33 freis
* source/sites/Prototypes/Makefile.h.in: cleaned up makefile
2004-02-03 09:39 freis
* source/util/tools/perfmon.F90: abbreviated data tags to cut down
on line wraps in logfile
2004-02-02 20:09 kantypas
* source/io/amr/hdf5_parallel/h5_parallel_write.c: checked status
and ierr variables -- if < 0 (fail) call abort_flash()
2004-02-02 19:04 jbgallag
* source/io/amr/hdf5_parallel/h5_parallel_read.c: fixed typo
2004-02-02 19:04 jbgallag
* source/io/amr/hdf5_parallel/checkpoint.F90: str_buff needed to be
allocated and deallocated in checkpoint_re routine as well
2004-02-02 19:03 tomek
* source/solvers/poisson/multigrid/isobnd_mpole/:
compute_mpole_moments.F90, find_center_of_mass.F90, init_mpole.F90,
mpole_common.F90, zone_moments.F90, zone_potential.F90: Update this
version of specialized multipole solver to the level of general
multipole solver; fix bug preventing the code from calculating
contributions from higher order multipoles at the boundary. Still
need to account for special cases - octant configuration in
compute_mpole_moments. And support for full 3-d cylindrical
geometry is missing from mgrid solver.
2004-02-02 19:02 sheeler
* source/util/tools/perfmon.F90: since profiling gets restored
after a restart, want to keep accumulating step numbers along with
time numbers.
2004-02-02 18:56 tomek
* source/solvers/poisson/multipole/: Config,
compute_mpole_moments.F90, init_mpole.F90: Cosmetic changes.
2004-02-02 17:57 kantypas
* source/io/amr/hdf5_serial/h5_write.c: checked ierr variable -- if
< 0 (fail) call abort_flash
2004-02-02 17:51 dubey
* source/: driver/init_flash.F90, util/tools/get_opt.F90: [no log
message]
2004-02-02 17:49 dubey
* source/driver/: init_flash.F90, init_flash_new1.F90,
init_flash_new2.F90: temporaru files for changing the command line
options
2004-02-02 17:44 dubey
* source/util/tools/: get_opt.F90, get_opt_new.F90: changing
commandline optionons in a temporary file
2004-02-02 17:39 jbgallag
*
source/mesh/amr/paramesh3.0/source/amr_1blk_cc_prol_gen_work_fun.F:
commiting Kevin Olson's update to this file, something to do with a
multigrid call
2004-02-02 17:36 sheeler
* source/util/tools/perfmon.F90: adding restart capability to
timers
2004-02-02 17:36 jbgallag
* source/io/amr/hdf5_parallel/h5_parallel_read.c: added the reading
of timer data and call to initialize timers based on these values
also made timer data arrays names consistent
2004-02-02 17:35 jbgallag
* source/io/amr/hdf5_parallel/: h5_parallel_write.c,
checkpoint.F90: made perfmon timer arrays names consistent
2004-02-02 17:19 jbgallag
* source/io/amr/hdf5_serial/: checkpoint.F90, h5_read.c,
h5_write.c: changing names of perfmon timer arrays to be consistent
2004-02-02 16:53 sheeler
* source/io/amr/hdf5_serial/checkpoint.F90: adding timer
initialization
2004-02-02 16:15 sheeler
* source/io/amr/hdf5_serial/h5_read.c: added a timer read function
and some abort_flash calls when hdf5 errors occur.
2004-02-02 16:05 jbgallag
* source/io/amr/hdf5_parallel/checkpoint.F90: added h5_write_timers
call and associated data structures. checkpoint now calls
log_timers from perfmon and then writes this data in each
checkpoint file so that we can have an accumulative total of timer
data and able to restart from checkpoint and initialize timers with
previous values.
2004-02-02 16:02 jbgallag
* source/io/amr/hdf5_parallel/h5_parallel_write.c: added
h5_write_timers call, writes timer data , is called from checkpoint
2004-02-02 16:02 jbgallag
* source/io/amr/hdf5_parallel/h5_parallel_write_particles.c: made
status check, if less than 0 (fail) abort flash
2004-02-02 16:01 jbgallag
* source/io/amr/hdf5_parallel/hdf5_flash.h: added full_timer_data
structure to hold Perfmon timer data passed from log_timers call
which is in perfmon
2004-02-02 14:11 dubey
* source/driver/time_dep/evolve.F90: small bug fix
2004-02-02 13:50 dubey
* source/util/tools/perfmon.F90: adding some support for zps
2004-02-02 13:01 jbgallag
* source/io/amr/hdf5_parallel/plotfile.F90: made str_buff
allocatable and allocated and deallocated it at file_init time and
file close time. removed second call to h5_file_close
2004-02-02 13:01 jbgallag
* source/io/amr/hdf5_parallel/checkpoint.F90: allocated and
deallocated str_buff at file initialization and file close also
removed second file close in if(MyPE == 0) if statement at the end
2004-02-02 12:42 dubey
* source/driver/time_dep/delta_form/: euler1/evolve.F90,
rk3/evolve.F90: [no log message]
2004-02-02 12:40 dubey
* source/driver/time_dep/delta_form/strang_delta/evolve.F90:
zones/sec in strang_delta evolve
2004-02-02 12:39 dubey
* source/driver/time_dep/delta_form/strang_state/evolve.F90:
zones/sec in delta_form evolves
2004-02-02 12:38 dubey
* source/driver/time_dep/evolve.F90: Support for zones/sec
calculation
2004-02-02 09:16 freis
* source/io/amr/: hdf5_serial/checkpoint.F90,
hdf5_serial/plotfile.F90, hdf4/checkpoint.F90, hdf4/plotfile.F90,
hdf5_parallel/checkpoint.F90, hdf5_parallel/plotfile.F90:
abbreviated file access tags to save space in logfile output
2004-02-01 19:49 tomek
* source/solvers/poisson/multigrid/poisson_mg_relax.F90: Remove
unused variable making attempt to access uninitialized data.
2004-02-01 19:45 tomek
* source/solvers/poisson/: Config, multipole/Config: Move the
point-mass-related parameteres to the main Config file.
2004-02-01 18:04 tomek
* source/util/tools/perfmon.F90: Name variable confusion:
check_ptnum vs. checkpt_num. The latter is right.
2004-01-31 19:24 tomek
* source/sites/cetus.asci.uchicago.edu/Makefile.h-pgf: Revised
version of the makefile for the Portland Group compiler.
2004-01-31 10:36 freis
* source/util/tools/perfmon.F90: added identifiers to logfile
output at checkpoint
2004-01-30 18:55 ricker
* source/source_terms/cool/sutherland_dopita/: Config,
CoolDataModule.F90, Makefile, cool_block.F90, init_cool.F90: Bug
fixes in Sutherland & Dopita cooling rate routine. Modified to
work with SVODE package.
2004-01-30 18:11 jbgallag
* source/io/amr/hdf5_serial/h5_write.c: added h5_write_timers. This
function gets 4 arrays from checkpoint.F90, one with timer names,
one with the timer values, then two integer arrays one of which I
don't know what it is for (is_timed) and the other describes what a
particular timer's parent is. The structure is defined in
hdf5_flash.h pretty much follows how runtime parameters are setup.
2004-01-30 18:08 jbgallag
* source/io/amr/hdf5_serial/checkpoint.F90: added h5_write_timers
call which is in h5_write.c
2004-01-30 18:08 jbgallag
* source/io/amr/hdf5_serial/hdf5_flash.h: Added perfmon timer data
structure
2004-01-30 18:07 jbgallag
* source/io/amr/hdf5_parallel/checkpoint.F90: made str_buff an
allocatable array as it needs to be
2004-01-30 14:03 freis
* Makefile: changed path to Makefile.h in file description
2004-01-30 13:18 freis
* source/util/tools/perfmon.F90: deleted data output at checkpoint
2004-01-30 12:06 jbgallag
* source/sites/flashviz.uchicago.edu/Makefile.h: added hdf5 include
on CFLAGS
2004-01-29 16:35 sheeler
* source/solvers/poisson/multigrid/poisson_mg_relax.F90:
2d_cylindrical now does a red sweep over all blocks, exchanges gcs,
then does a black sweep over all blocks. This should be changed in
the cartesian case, too.
2004-01-29 16:30 sheeler
* source/mesh/solvers/multigrid/multigrid.F90: adding some more
printing of convergence behavior and changing some comments
2004-01-29 16:10 sheeler
* source/mesh/solvers/multigrid/mg_set_ext_bndry.F90: correcting a
neumann
2004-01-29 15:52 sheeler
* source/mesh/solvers/multigrid/mg_init_src.F90: calculating source
average differently and reorganized a loop for doing given value
bcs
2004-01-29 14:29 sheeler
*
source/solvers/poisson/multigrid/isobnd_mpole/find_center_of_mass.F
90: was using incorrect indicies on a boundary.
2004-01-29 14:19 sheeler
* source/solvers/poisson/multigrid/poisson.F90: don't really need
to set neumann for r = 0 boundary for 2d cylindrical
2004-01-29 13:54 freis
* source/util/tools/perfmon.F90: deleted print statements added for
debugging and left in the code
2004-01-28 15:55 jbgallag
* source/sites/flashviz.uchicago.edu/Makefile.h: updated hdf5
location to use
2004-01-28 15:26 freis
* source/util/tools/perfmon.F90: added calculation of accumulated
time of running timers for checkpoint serialization
2004-01-28 14:13 freis
* source/util/tools/logfile.F90: changed output order of module and
runtime parameter lists to be included in logfile after restart
2004-01-28 12:10 tomek
* setups/wd_def/wr_integrals.F90: Declare previously undeclared
scalar variable.
2004-01-28 11:06 tomek
* source/mesh/amr/paramesh2.0/mesh_interface.F90: Typo correction.
2004-01-27 21:03 tomek
* source/driver/time_dep/flash.F90: Make the code run for exactly
nend steps. Also, the main loop counter, nstep, was incremented by
extra 1 if the do-loop terminated due to reaching the final index
(only termination by exit statement was giving correct number of
steps).
2004-01-27 20:16 tomek
* setups/wd_def/flash.par.2d-benchmark: Missed adding iflame.
2004-01-27 20:11 tomek
* setups/wd_def/flash.par.2d-benchmark: Lower maxblocks to 3500 -
this should keep the code small enough also with the real burner.
2004-01-27 19:48 tomek
* setups/wd_def/: flash.par.2d-benchmark, flash.par.3d-benchmark:
Benchmark flash.par files. See file headers for setup commands.
These are specifically designed for single processor and limited to
about 900 Mbytes to fit on linux boxes.
2004-01-27 19:18 tomek
* source/io/output.F90: Prevent accessing particle-dependent
variables if we do not run with particles.
2004-01-27 19:04 tomek
* source/source_terms/burn_nse/FlameModelModule.F90: shock_burning
not defined.
2004-01-27 14:59 nata
* setups/wd_def/Config: Including alternative module "burn/is07"
2004-01-27 14:53 nata
* source/source_terms/burn_nse/: Config, FlameModelModule.F90,
Makefile: Combining flame model with nuclear burning.
2004-01-27 14:49 nata
* setups/: front_tracking_test1/Config,
front_tracking_test2/Config, front_tracking_test2/Modules.wd,
wd_def/Config, wd_def/Config.1d_sph, wd_def/Config.2d_cyl,
wd_def/Config.3d_car: Adding "requires burn/null" module.
2004-01-27 14:42 nata
* setups/: front_tracking_test1/flash.par,
front_tracking_test1/flash.par.adv_vel_minus,
front_tracking_test1/flash.par.adv_vel_plus,
front_tracking_test1/flash.par.adv_vel_zero,
front_tracking_test1/flash.par.var_ash_inert,
front_tracking_test1/flash.par.var_density,
front_tracking_test1/flash.par.var_flamespeed,
front_tracking_test1/flash.par.var_fuel_inert,
front_tracking_test2/flash.par,
front_tracking_test2/flash.par.cart3d,
front_tracking_test2/flash.par.cyl2d,
front_tracking_test2/flash.par.wd, wd_def/flash.par,
wd_def/flash.par.1d_sph, wd_def/flash.par.2d_cyl,
wd_def/flash.par.3d_car, wd_def/flash.par.3d_car_center,
wd_def/flash.par.3d_car_octant, wd_def/flash.par.3d_car_off-center:
Renaming parameter iburn -> iflame.
2004-01-27 13:44 freis
* source/util/tools/PAPI/perfmon.F90: added new subroutines called
by checkpoint
2004-01-27 12:34 freis
* source/: io/amr/hdf5_serial/checkpoint.F90,
util/tools/perfmon.F90: added arrays to log_timers in checkpoint to
pass timer data back to checkpoint for serialization
2004-01-26 15:28 freis
* source/util/tools/perfmon.F90: fixed indentation bug of perfmon
summaries with restart
2004-01-24 16:20 weirs
*
source/driver/time_advancement/state_form/strang/advanceBlockList.F
90: Corrected autodoc header line.
2004-01-23 18:32 tomek
* source/io/amr/: hdf5_parallel/checkpoint.F90,
hdf5_parallel/plotfile.F90, hdf5_serial/checkpoint.F90,
hdf5_serial/plotfile.F90: Cosmetic changes to get stdout info
complete and consistent between versions.
2004-01-23 17:50 tomek
* setups/wd_def/wr_integrals.F90: Added mass histogram binned over
density. This allows quickly estimate amount of different elements
being produced by detonation (if any).
2004-01-23 11:09 tomek
* setups/wd_def/Config: Added configuration for tracer particles:
hash them out if you want to use it.
2004-01-23 10:21 nata
* source/source_terms/burn_nse/: FlameModelModule.F90, Makefile,
burn_block.F90: burn_block is combined with FlameModelModule, and
eliminated as a subroutine. Now FlameModelModule has functionality
similar to burnModule.
2004-01-21 17:29 jbgallag
* source/driver/Makefile: added ParticleData.o as a dependency for
init_flash
2004-01-21 17:29 jbgallag
* source/driver/init_flash.F90: init_flash now uses ParticleData
and if it find RunningParticles to be true it gets the particle
plotfile number (pptnumber) sets its index and stores the value in
the runtime database
2004-01-21 17:23 jbgallag
* source/io/Makefile: added particleplot.F90 as a dependency
2004-01-21 17:23 jbgallag
* source/io/particleplot.F90: high level call for particle plotfile
output
2004-01-21 17:22 jbgallag
* source/io/output_initial.F90: added the ability to output a
number particle plotfile and dump it after every ptplot seconds has
elapsed in simulation time
2004-01-21 17:17 jbgallag
* source/io/output.F90: added the ability to output a numbered
particle plotfile and dump it when every ptplot seconds have
elapsed in simulation time. It follows the same logic as for
plotfiles
2004-01-21 17:14 ricker
* source/source_terms/cool/sutherland_dopita/cool_block.F90: Fixed
a bug: if enuc wasn't defined, attempting to store the cooling
rate would overwrite another solution variable in the next zone
(since ienuc=-1), with unpredictable results. In this case, it
overwrote an abundance, causing trouble with the eos3d call in
cool_block.
2004-01-21 16:58 jbgallag
* source/io/Config: added parameters PPTNumber (particle plotfile
number) and ptplot (time in seconds between particle plotfile
dumps)
2004-01-21 16:56 jbgallag
* source/io/amr/hdf5_parallel/particleplot.F90: fortran plotfile
routines for seperate particle file, calls
h5_parallel_write_particles
2004-01-21 16:55 jbgallag
* source/io/amr/hdf5_parallel/h5_parallel_write_particles.c: new
routine for writing particle tracers database into a seperate file
named *_hdf5_particles_NNNN. Right now it just dumps the "particl
etracers" database exactly how it is done in h5_parallel_write.c
(h5_write_particles_chk), there is no other information written to
this file, but now that it is seperated it should be easy to add
what we need.
2004-01-21 16:53 jbgallag
* source/io/amr/hdf5_parallel/: checkpoint.F90,
h5_parallel_write.c: changed h5_write_particles to
h5_write_particles_chk
2004-01-21 16:52 jbgallag
* source/io/amr/hdf5_parallel/Makefile: added
h5_parallel_write_particles dependency
2004-01-21 15:47 caceres
* source/util/wrapping/int2API.py: Switched the name mangler over
to mangle_names.h. Still do the lowercasing in python.
2004-01-21 12:11 nata
* setups/front_tracking_test1/README: Added a line reminding how to
setup the problem.
2004-01-21 12:07 nata
* source/source_terms/burn_nse/: burnModule.F90, init_burn.F90:
Renaming: burn_nse/burnModule.F90 -> burn_nse/FlameModelModule.F90,
burn_nse/init_burn -> burn_nse/init_flame.F90; this
is done to avoid name conflict, in case if we want to use both burn
and burn_nse modules. (I missed removing them in the previous
commit)
2004-01-21 12:05 nata
* source/source_terms/: FlameModelModule.F90, Makefile,
init_flame.F90, init_src.F90, source_termsModule.F90,
burn_nse/Config, burn_nse/FlameModelModule.F90, burn_nse/Makefile,
burn_nse/init_flame.F90: Renaming: burn_nse/burnModule.F90 ->
burn_nse/FlameModelModule.F90, burn_nse/init_burn ->
burn_nse/init_flame.F90; this is done to avoid name conflict, in
case if we want to use both burn and burn_nse modules.
2004-01-21 10:48 freis
* source/: io/amr/hdf5_serial/checkpoint.F90,
util/tools/perfmon.F90: added arrays for timer data to pass values
to checkpoint on log_timers
2004-01-21 08:18 sheeler
* source/solvers/poisson/multigrid/fftcg/poisson_mg_solve.F90: work
with new different boundary conditions on different sides.
2004-01-20 17:48 tomek
* source/io/: amr/chombo/checkpoint.F90, amr/hdf4/checkpoint.F90,
amr/hdf5_parallel/checkpoint.F90, amr/hdf5_serial/checkpoint.F90,
amr/ncmpi/checkpoint.F90,
ug/hdf5_parallel/uniformGridII/checkpoint.F90: Properly account for
change in step number after restart; correct diagnostics in case
number of blocks exceeds the allowed maximum. Hope I didn't miss
any version...
2004-01-20 17:09 tomek
* source/driver/init_from_checkpoint.F90: Removed unsued variable.
2004-01-20 12:16 freis
* source/util/tools/: logfile.F90, logfile_request.F90: added
setup_stamp to /datalog/logfile.F90; also, extended stamp_logfile
to handle empty strings in string array passed to logfile.
2004-01-19 18:40 tomek
* bin/setup.py, source/util/tools/logfile.F90: Make distinction
between setup time and build time.
2004-01-19 02:01 ricker
* source/driver/init_from_scratch.F90: Fixed bug in particle init
code in init_from_scratch. Calls to mesh_refine_derefine do not,
by themselves, update the database's notion of block coordinates
(used to return information by dBaseGetCoords). When the final
call to mesh_refine_derefine in init_from_scratch results in a
change to the distribution of blocks to processors (e.g., when
particles are used to weight the blocks), failing to call grid()
afterward thus leaves the database coordinate info un-updated,
leading to bad things (particle outside of block and the like).
2004-01-19 01:57 ricker
* source/particles/: mapping/Config, passive/AdvanceParticles.F90,
passive/Config, passive/InitParticlePositions.F90,
passive/Makefile: Restructured passive particle module. Created
two new submodules, distribution (to collect different methods for
initializing tracer particles) and time_integration (to collect
different time integration methods). The previous standard
initialization is moved to distribution/lattice, and a new
initialization method, with_density, is added. The previous
standard time integrator is moved to time_integration/euler, and a
new integrator, pred_corr, is added. A new mesh-particle mapping
submodule, quadratic, is added. Setups previously using passive
particles will need to INCLUDE
particles/passive/distribution/lattice to continue functioning as
before.
2004-01-16 18:09 tomek
* source/io/output.F90: Prevent infinite do-while looping.
2004-01-16 14:45 freis
* source/util/tools/perfmon.F90: add a cosmetic change that got
lost in a previous update
2004-01-16 13:41 tomek
* source/io/output_initial.F90: Make it aware of nrstrt being
possibly greater than zero so now one can dump restart files each
fixed number of steps including step 0.
2004-01-16 13:41 linde
* source/hydro/mhd/mhd_add_resistive_fluxes.F90: Updated resistive
flux routine
2004-01-16 13:36 tomek
* source/io/amr/hdf5_serial/checkpoint.F90: The code hangs on SGI
in case there are too few processors available after restart:
jumping to the barrier seems harmful.
2004-01-16 13:24 tomek
* source/driver/init_flash.F90: Initialize the current step number
to the initial step number (this removes a problem of nstep being
smaller than the default BeginStepNumber).
2004-01-16 13:23 tomek
* source/util/tools/perfmon.F90: Fixed division by zero by
n_intervals and tot_time.
2004-01-16 10:41 freis
* setups/scaling_test/init_from_scratch.F90: fixed two typos
2004-01-15 17:52 tomek
* source/sites/cetus.asci.uchicago.edu/Makefile.h-ifc80: Add -O0 to
debug options.
2004-01-15 17:48 tomek
* source/sites/cetus.asci.uchicago.edu/Makefile.h-ifc80: Intel 8.0
compiler makefile - this one actually creates a working executable.
2004-01-15 15:28 freis
* source/util/tools/logfile.F90: set up create_logfile so that
parameter data is not logged again at restart
2004-01-15 15:26 freis
* setups/jeans/init_block.F90: added formatting attrib to logfile
call
2004-01-15 15:22 tomek
* source/mesh/amr/paramesh2.0/amr_redist_blk.F90: Modify actual
argument to MPI_AllgatherV so no temporary storage is created.
2004-01-15 15:19 freis
* source/io/amr/hdf5_serial/checkpoint.F90: added logfile entries
indicating start and completion of checkpoint file reads on restart
2004-01-15 13:54 tomek
* source/util/tools/perfmon.F90: Local variable defined twice.
2004-01-14 18:38 tomek
* source/driver/time_dep/flash.F90: Stamp logfile upon entry and
exit of the main evolution loop.
2004-01-14 18:37 tomek
* source/solvers/poisson/multigrid/poisson.F90: Remove unUSEd
stamp_logfile.
2004-01-14 17:23 tomek
* source/: mesh/solvers/multigrid/multigrid.F90,
solvers/poisson/multigrid/poisson.F90: Make sure we do not try to
precondition mgrid solution after restart - big time saver! (This
is Dan's modification.)
2004-01-14 14:48 freis
* source/: util/tools/Makefile, util/tools/logfile.F90,
util/tools/perfmon.F90, io/amr/hdf5_serial/checkpoint.F90: added
subroutine to perfmon to dump timer data at checkpoints to logfile
2004-01-14 14:44 freis
* source/util/tools/dump_to_logfile.F90: new subroutine to dump
data to logile
2004-01-12 20:36 tomek
* source/mesh/amr/paramesh2.0/amr_morton.F90: Make the abort
diagnostics less cryptic.
2004-01-12 18:41 tomek
* source/: driver/init_from_scratch.F90,
driver/time_dep/evolve.F90,
gravity/poisson/GravPotentialAllBlocks.F90: Make distinction
between init and evolve phase when timing a gravity solver. Totals
are given as well.
2004-01-12 09:46 tomek
* source/mesh/amr/paramesh2.0/: amr_restrict_bnd_data.F90,
amr_restrict_cc.F90: Refine diagnostics for the memory overflow.
2004-01-11 14:58 sheeler
* source/mesh/solvers/multigrid/mg_set_ext_bndry.F90: handling 2d
cylindrical cases, still need to support user supplied functions
for boundary values.
2004-01-11 14:47 sheeler
* source/mesh/solvers/multigrid/mg_norm.F90: this does 2d
cylindrical norms
2004-01-11 14:44 sheeler
* source/mesh/solvers/multigrid/mg_determine_geometry.F90: this
allows the solver to accept 2d cylindrical.
2004-01-11 14:08 sheeler
* source/solvers/poisson/multigrid/poisson_mg_residual.F90: this
resiudal function has 2d cylindrical geometry factors.
2004-01-11 14:04 sheeler
* source/solvers/poisson/multigrid/poisson_mg_relax.F90: this
relaxation routine has geometry factors for 2d cylindrical.
2004-01-11 14:00 sheeler
* source/solvers/poisson/multigrid/poisson_image_mass.F90: don't
put image mass at r=0 in 2d cylindrical coords.
2004-01-11 13:45 sheeler
* source/solvers/poisson/multigrid/poisson.F90: isolated boundaries
should use preconditioning now. This should speed things up
considerably in runs.
2004-01-11 13:27 sheeler
*
source/solvers/poisson/multigrid/isobnd_mpole/find_center_of_mass.F
90: this will let the 2d cylindrical isolated boundary condition
solver be run more than once.
2004-01-09 13:37 freis
* source/: io/amr/hdf5_serial/checkpoint.F90, util/tools/Makefile,
util/tools/logfile.F90, util/tools/perfmon.F90: removed perfmon
calls from logfile modules; logfile now accesses perfmon via
logfile_request. Also, added a subroutine to perfmon that lists
the timers and their values when called with flag set to 1.
Currently, this only print to screen if the flag value in
checkpoint is set to 1.
2004-01-08 16:36 tomek
* setups/wd_def/: flash.par, flash.par.1d_sph, flash.par.2d_cyl,
flash.par.3d_car, flash.par.3d_car_center, flash.par.3d_car_octant,
flash.par.3d_car_off-center: Changing den_fluff to dens_fluff
across par files.
2004-01-08 16:35 tomek
* source/io/: output.F90, output_final.F90, output_initial.F90: No
checkpoint, plotfile or integrals file is created if corresponding
parameters are set to zero (nrstrt, trstrt, pltout, or
wr_intergrals). This behaviour extends to output_final as well.
Reformatting of diagnostics.
2004-01-08 16:25 tomek
* source/materials/eos/helmholtz/init_eos.F90: Minor reformatting
of the diagnostic info.
2004-01-08 16:24 tomek
* bin/make_release: Fixing variable assignement - RELEASE date is
now properly appended to log file after FLASH major release
version.
2004-01-07 18:41 jbgallag
* source/io/amr/hdf5_parallel/plotfile.F90: fixed if statement
logic for logfile stamp and a small typo in the write
2004-01-07 18:40 jbgallag
* source/io/amr/hdf5_parallel/checkpoint.F90: added definition of
num_to_str which logfile stamp requires
2004-01-07 18:34 jbgallag
* source/io/amr/ncmpi/plotfile.F90: added definition of num_to_str
for logfile stamp, fixed typo in the last write statement
2004-01-07 18:33 jbgallag
* source/io/amr/ncmpi/checkpoint.F90: added definition of
num_to_str for logfile stamp (it was ommited before)
2004-01-07 17:24 sheeler
*
source/mesh/amr/paramesh2.0/quadratic_cylindrical/amr_prolong_gen_u
nk_fun.F90: Okay, so you always have at least one species and
inuc_begin is greater than 0, but if there's no density variable,
skip all that mass conservation stuff.
2004-01-07 17:07 sheeler
*
source/mesh/amr/paramesh2.0/quadratic_cylindrical/amr_prolong_gen_u
nk_fun.F90: I want to do some "unit tests" of the mg solver that
don't have density as a variable. This routine does special things
with density and species masses and was dying if density wasn't
defined or there were no nuclear species. I don't think this was
necessary, so I put special cases around the code in places where
it handles those variables specially. I hope I didn't break
something.
2004-01-07 15:54 tomek
* setups/wd_def/: flash.par.3d_car_center, flash.par.3d_car_octant,
flash.par.3d_car_off-center: Revised par files.
2004-01-07 15:14 tomek
* setups/wd_def/composition_C-O-Mg.dat: Adding composition for the
stellar model.
2004-01-07 13:17 dubey
* source/sites/seaborg.nersc.gov/flashrun: Add sample batchscript
for seaborg
2004-01-06 17:29 tomek
* source/hydro/explicit/split/ppm/rieman.F90: Isentropic vortex
test crashing due to blow up of some terms in case of nearly
constant pressure distribution. Changed criteria from switching
between wave speeds and sound speed. Numerous tests will show
differencesB in the last digit or so.
2004-01-06 15:04 freis
* source/util/Makefile: bum change
2004-01-06 15:01 freis
* source/util/tools/logfile.F90: simplified format specifier for
printing name/value pairs
2004-01-06 12:19 tomek
* setups/: dust_coll_mm_cart/init_block.F90, jeans/init_block.F90:
Fixing stamp_logfile call format.
2004-01-05 20:03 sheeler
* source/mesh/solvers/multigrid/mg_set_ext_bndry.F90: should work
with neumann and dirichlet in cartesian geometry
2004-01-05 19:36 tomek
* source/io/output.F90: Modified the method we maintained time
stepping for plotfiles and restart files - no output should be
missed, no drift should be present. In essence, Paul's recipe for
the redshift is followed; tinitial is accounted for properly so the
output is regularly spaced not from t=0 but tinitial. Added a
safeguard against saving the same checkpoint file twice when
checkpointing due to elapsed execution time coincides with
checkpointing due to elapsed evolutionary time. Performance summary
is now printed when aborting with .dump_restart or .kill.
2004-01-05 13:46 freis
* source/util/tools/logfile.F90: fix to omit trailing = on
file_write
2004-01-05 13:41 tomek
* setups/wd_def/wr_integrals.F90,
source/source_terms/burn_nse/burn_nse.F90: Modify output header for
totals including specie names; add binding energy; account for
threshold in calculation of mass in NSQE; only cosmetic changes in
burn_nse.
2004-01-04 19:48 tomek
* setups/wd_def/: Config, Config.1d_sph, Config.2d_cyl,
Config.3d_car, flash.par, flash.par.1d_sph, flash.par.2d_cyl,
flash.par.3d_car, flash.par.3d_car_center, init_block.F90,
mark_grid_refinement.F90: Further revision of grid refinement;
changed parameter names to be consistent; adjust Config and par
files; cosmetic changes in init_block..
2004-01-03 15:11 sheeler
* tools/fidlr2/xflash.pro: for 1d slicing, there was a reform
statement that was removing the block index when there was only one
block. I just removed it because it follows right after a call to
create_variable which reforms the array without removing the block
index.
2004-01-02 15:41 zingale
* source/materials/eos/perfect_gas+rad/eos.F90: fix a bug pointed
out by Weiqun Zhang -- the entropy and its derivatives were using
an old value of temp_inv for inputs 2 and 3
2004-01-02 12:34 tomek
* setups/wd_def/flash.par, setups/wd_def/flash.par.1d_sph,
setups/wd_def/flash.par.2d_cyl, setups/wd_def/flash.par.3d_car,
setups/wd_def/flash.par.3d_car_center,
source/source_terms/burn_nse/Config,
source/source_terms/burn_nse/burn_nse.F90: Channe nse_max_qburn to
nse_max_dphi; reflect this change across par files; make par files
mutually consistent
2003-12-30 18:41 tomek
* setups/wd_def/: Config, Config.1d_sph, Config.2d_cyl,
Config.3d_car, flash.par.3d_car_center, init_block.F90,
mark_grid_refinement.F90: Added support for random velocity
perturbations. Optimized refinement criteria.
2003-12-30 17:47 nata
* source/source_terms/burn_nse/: Config, burn_block.F90,
burn_nse.F90: nseBurnBlock is replaced by nseBurn, which is called
in the i-j-k loop. The energy release per cell per timestep is
limited by the runtime parameter "nse_max_qburn".
2003-12-30 11:44 tomek
* source/source_terms/burn_nse/burn_nse.F90: Cosmetic changes.
2003-12-30 11:39 tomek
* source/sites/cube.asci.uchicago.edu/Makefile.h-32: Provide a copy
of default 32-bit version Makefile so we do not need to worry of
preserving original file.
2003-12-30 11:22 freis
* source/io/amr/hdf5_serial/plotfile.F90: added accidentally
deleted closing brace
2003-12-30 11:14 freis
* source/io/amr/ncmpi/plotfile.F90: standardized logfile output at
plotfile file creation/writing
2003-12-30 11:07 freis
* source/io/amr/hdf5_serial/plotfile.F90: standardized logfile
output at plotfile file creation/writing
2003-12-30 11:02 freis
* source/io/amr/hdf5_parallel/plotfile.F90: standardized logfile
output at plotfile file creation/writing
2003-12-30 11:02 freis
* source/io/amr/hdf4/plotfile.F90: deleted superfluous logfile call
2003-12-30 10:54 freis
* source/io/amr/hdf4/plotfile.F90: standardized logfile output at
checkpoint file creation/writing
2003-12-30 10:24 freis
* source/io/: ug/hdf5_parallel/uniformGridII/checkpoint.F90,
amr/hdf5_serial/checkpoint.F90: standardized logfile output at
checkpoint file creation/writing
2003-12-30 10:17 freis
* source/io/amr/ncmpi/checkpoint.F90: standardized logfile output
at checkpoint file creation/writing
2003-12-30 09:57 nata
* source/source_terms/burn_nse/burn_block.F90: Bug fix: resetting
flame speed to zero in non-burning blocks.
2003-12-30 09:52 freis
* source/io/amr/hdf5_parallel/checkpoint.F90: standardized logfile
output at checkpoint file creation/writing
2003-12-30 09:41 freis
* source/io/amr/hdf4/checkpoint.F90: standardized logfile output at
checkpoint file creation/writing
2003-12-29 17:27 nata
* source/source_terms/burn_nse/burn_nse.F90: Changed the logic of
checking for input parameters.
2003-12-29 17:20 nata
* source/source_terms/burn_nse/burn_nse.F90: Restrict the speed of
burning to Si and Ni.
2003-12-29 16:22 tomek
* setups/wd_def/mark_grid_refinement.F90: Fixed assigning dref to
dtvgas.
2003-12-29 16:16 tomek
* setups/wd_def/Config: Added list of options required to configure
the code to use multigrid solver with isolate boundary conditions.
This follows experiments we've done with Dan.
2003-12-28 06:42 freis
* source/io/ug/hdf5_parallel/uniformGridII/checkpoint.F90: fixed
parameter order in stamp_logfile to new interface
2003-12-28 06:39 freis
* source/io/amr/ncmpi/checkpoint.F90: fixed parameter order in
stamp_logfile to new interface
2003-12-28 06:35 freis
* source/io/amr/hdf5_parallel/checkpoint.F90: fixed parameter order
in stamp_logfile to new interface
2003-12-28 06:32 freis
* source/io/amr/hdf4/checkpoint.F90: fixed parameter order in
stamp_logfile to new interface
2003-12-27 06:50 freis
* source/util/tools/logfile.F90: Updated stamp_logfile interface
and added documentation
2003-12-23 17:36 tomek
* setups/wd_def/flash.par.3d_car_center: 3-D center ignition model
with maximum resolution adjustable down to 1 km.
2003-12-23 10:16 nata
* source/source_terms/burn_nse/burn_nse.F90: Removed non-used
declaration, "use_erg_per_gram".
2003-12-23 09:29 freis
* source/driver/time_dep/flash.F90: fixed string indices on
redshift warning message and added missing logging tag
2003-12-23 09:15 freis
* setups/: hypre_test/flash.F90, vis_test/flash.F90: changed
tstamp_logfile to new stamp_logfile interface
2003-12-22 18:29 tomek
* setups/wd_def/Config: Added a multigrid option. Setup with
-with-module=gravity/poisson/multigrid
-with-module=solvers/poisson/multigrid/isobnd_mpole if you want to
use multigrid instead of multipole.
2003-12-22 16:16 nata
* setups/front_tracking_test1/: README, flash.par,
flash.par.adv_vel_minus, flash.par.adv_vel_plus,
flash.par.adv_vel_zero: Added parameter files for advection tests
and updated README.
2003-12-22 12:57 freis
* source/util/tools/logfile.F90: added format specifier to logfile
printing routine to avoid linebreaks on intel machines
2003-12-22 11:30 nata
* setups/front_tracking_test1/: FlameSpeed.F90,
flash.par.var_flamespeed, init_block.F90: Made variable flamespeed
dependent on coordinate rather than on composition.
2003-12-20 14:25 nata
* setups/front_tracking_test1/: Config, FlameSpeed.F90,
flash.par.var_flamespeed: Made parameters more intuitive, and
average flamespeed finite.
2003-12-19 18:46 nata
* setups/front_tracking_test1/: FlameSpeed.F90,
flash.par.var_ash_inert, flash.par.var_density,
flash.par.var_flamespeed, flash.par.var_fuel_inert: Added variable
flame speed test and parameter files for variable speed and
composition.
2003-12-19 16:30 nata
* setups/front_tracking_test1/: Config, flash.par, init_block.F90:
Adding inert component by default.
2003-12-19 15:21 nata
* setups/: front_tracking_test1/Config,
front_tracking_test1/init_block.F90,
front_tracking_test1/user_bnd.F90, front_tracking_test2/Config,
front_tracking_test2/README, front_tracking_test2/flash.par.wd,
front_tracking_test2/init_block.F90: Renamed "passive" to "inert".
2003-12-19 11:54 sheeler
*
source/solvers/poisson/multigrid/poisson_mg_gauss_seidel_relax.F90:
just checking in a routine to do plain gs relaxation.
2003-12-19 10:59 calder
* setups/wd_def/Config.3d_car: Fixed a typo in the 3-d config file.
2003-12-18 21:16 calder
* setups/wd_def/: Config.1d_sph, Config.2d_cyl, Config.3d_car:
Added refinement criteria parameters to the Config files.
2003-12-18 09:55 tomek
* setups/wd_def/Config: Missed to add derefine_dens.
2003-12-17 13:08 tomek
* setups/wd_def/flash.par.2d_cyl: 2-D setup for off-center ignition
model and long-term evolution.
2003-12-17 13:08 tomek
* setups/wd_def/mark_grid_refinement.F90: Optimized refinement
criteria with density treshold for derefinement allowing for
modeling long-term off-center ignition problems.
2003-12-16 20:42 nata
* setups/front_tracking_test1/: Config, flash.par, init_block.F90:
Adding testing for variable density and composition.
2003-12-15 18:16 nata
* setups/front_tracking_test1/: Config, Makefile, flash.par,
init_block.F90, user_bnd.F90: Converted setup to a simple 1-d
flame.
2003-12-15 18:14 nata
* setups/front_tracking_test1/: composition_C-O-Mg.dat,
composition_fuel+ash.dat, flash.par.gamma, flash.par.helmholtz,
flash.par.ld, flash.par.sph, icAnalytical.F90.cos,
icAnalytical.F90.sph, icAnalytical.F90.zigzag, wr_integrals.F90:
Got rig of all L-D stuff. I hope k95 setup will take care of it.
2003-12-10 20:07 tomek
* source/solvers/poisson/multipole/: init_mpole.F90,
mpole_common.F90, poisson.F90: Fixed defining boundary conditions
for multipole solver. Defining them is a sort of nonsense as only
"isolated" are supported. One is also forced to use
"grav_boundary_type" - making the code sensitive to "grav_boundary"
can be restored but makes little sense to me right now.
2003-12-10 16:20 sheeler
* source/gravity/poisson/GravPotentialAllBlocks.F90: setup the bcs
in the wrong place (in the first call block only). better now.
2003-12-10 15:07 fryxell
* source/hydro/explicit/euler_ms/ppm/: avisco.F90, cma_flatten.F90,
coeff.F90, detect.F90, flaten.F90, force.F90, geom.F90, grdvel.F90,
hydro.F90, hydro_1d.F90, PPMModule.F90, interp.F90, intrfc.F90,
monot.F90, rieman.F90, riemann_hlle.F90, states.F90:
Moved dBase calls out of hydro routines into hydro.F90 and passed
in everything as arguments. Changed array indexing from 1:nzn+8 to
-3:nzn+4. Removed modules from low level routines. General
cleanup.
2003-12-10 13:26 tomek
* source/solvers/poisson/multipole/poisson.F90: Syntax error fix (
not-equal operator is '/=' and not shell-like '!=').
2003-12-10 13:12 linde
* tools/flash2tec/flash2tec.c: Fixed data format error in the
converter
2003-12-09 01:21 sheeler
* source/solvers/poisson/multipole/poisson.F90: changed poisson
interface to include different bcs on different sides.
2003-12-09 01:20 sheeler
* source/gravity/poisson/GravPotentialAllBlocks.F90: changing calls
to poisson, which in principle allows different bcs on different
sides, but all sides still get same bcs.
2003-12-09 01:11 sheeler
* source/solvers/poisson/multigrid/: Config, poisson.F90,
poisson_mg_relax.F90, poisson_mg_residual.F90,
poisson_mg_solve.F90: making boundary conditions part of interface.
coarse grid solver now defaults to iteration rather than fft.
2003-12-09 00:47 sheeler
* source/mesh/solvers/multigrid/: mg_determine_geometry.F90,
mg_valid_bcs_and_geometry.F90, mg_valid_bcs_and_geometry.h:
factored out determining geometry and bc validity testing
2003-12-09 00:42 sheeler
* source/mesh/solvers/multigrid/: Makefile, mg_bndry.F90,
mg_common.F90, mg_cycle.F90, mg_guardcell.F90, mg_init.F90,
mg_init_src.F90, mg_precond.F90, mg_prolong.F90,
mg_set_ext_bndry.F90, multigrid.F90: changes to make solver accept
different bcs on different sides.
factored out some testing of validity of bcs into subroutines.
2003-12-05 22:46 tomek
* setups/wd_def/mark_grid_refinement.F90: The revised scheme caused
refinement/derefinement from one cycle to another of blocks inside
regions where we want to have fair resolution (for example within
stellar radius). Current scheme prevents removal of blocks in case
fair resolution was obtained.
2003-12-05 18:58 calder
* setups/wd_def/Config.3d_car: Minor typo change
2003-12-05 13:56 nata
* source/source_terms/burn_nse/burn_nse.F90: Bug fix: when quitting
the nseBurnBlock subroutine after the first stage forget to
renormalize or restrict abundances.
2003-12-05 11:37 nata
* setups/front_tracking_test2/Config: Bug fix: one volscalar is not
enougth if we want to run 3-step burner.
2003-12-04 21:15 sheeler
* source/mesh/solvers/multigrid/multigrid.F90: this change I wanted
to keep: if solving a problem with zero source, use the change of
residual as convergence critereon instead of relative norm of error
to norm of source.
2003-12-04 21:06 sheeler
* source/mesh/solvers/multigrid/mg_common.F90: trying to revert
yesterday's changes
2003-12-04 21:02 sheeler
* source/mesh/solvers/multigrid/: Makefile, mg_bndry.F90,
mg_cycle.F90, mg_finalize.F90, mg_init_coefficient.F90,
multigrid.F90: trying to revert yesterday's changes: want to make
all the variable coefficient changes in the equation dependant
part...
2003-12-04 20:59 tomek
* source/source_terms/burn_nse/Config: I separated quenching
parameters from other variables. Badly missed grouping according to
functionality...
2003-12-04 20:58 tomek
* setups/wd_def/: Config, mark_grid_refinement.F90: Revised
refinement criteria: we uniformly resolve central region initially
containing the star plus regions denser than, say, few times 1e6 so
all actively burning and quenching regions will be resolved to that
nominal resolution (usually we ask for 20 km to get the star
stable).
2003-12-04 20:53 tomek
* setups/wd_def/flash.par: 2-D whole star in large computational
domain and with off-center ignition; setup with more efficient
refinement scheme.
2003-12-04 20:30 calder
* source/sites/Aliases: Added the alias for alc. Seems to work.
2003-12-04 17:46 nata
* setups/front_tracking_test2/: Config, Modules.wd, flash.par,
flash.par.cart3d, flash.par.cyl2d, flash.par.wd, init_block.F90:
Reorganized the setup to test both burn_nse modules with fuel+ash
and iso7 compositions.
2003-12-04 13:38 sheeler
* source/mesh/solvers/multigrid/: Makefile, mg_bndry.F90,
mg_common.F90, mg_cycle.F90, mg_finalize.F90,
mg_init_coefficient.F90, multigrid.F90: changes to support the
solution of variable coefficient problems
2003-12-03 18:05 tomek
* setups/1cyl/mark_grid_refinement.F90: Added Ma=3 case for
rectangular refinement.
2003-12-03 13:26 freis
* setups/jeans/init_block.F90: added a formatting string writing to
string buffer; portland compiler insisted on it
2003-12-03 12:13 nata
* source/source_terms/burn_nse/LaminarFlameSpeed.F90: Bug fix:
non-module subroutine needs array dimensions.
2003-12-03 11:32 nata
* setups/wd_def/init_block.F90: Bug fix: forgot to rename laminar
speed subroutine called.
2003-12-03 11:25 nata
* source/source_terms/burn_nse/burn_nse.F90: Extension to initally
non-uniform composition. CVS
-------------------------------------------------------------------
---
2003-12-03 10:40 nata
* setups/front_tracking_test1/init_block.F90,
setups/front_tracking_test2/init_block.F90,
setups/wd_def/init_block.F90,
source/source_terms/burn_nse/FlameSpeed.F90,
source/source_terms/burn_nse/LaminarFlameSpeed.F90,
source/source_terms/burn_nse/Makefile,
source/source_terms/burn_nse/burn_nse.F90: Computing laminar flame
speed is moved from burn_nse module to independent subroutine.
2003-12-03 10:07 nata
* source/source_terms/burn_nse/FlameSpeed.F90: Cleaning up.
2003-12-02 15:28 nata
* source/source_terms/burn_nse/: FlameSpeed.F90, Makefile,
burn_block.F90: The flame speed is extracted from burn_block to a
separate subroutine.
2003-12-02 13:52 nata
* source/source_terms/burn_nse/burn_block.F90: Renaming subroutines
FlameSpeed* to SubgridFlameSpeed*.
2003-12-02 13:38 nata
* source/util/front_tracking/: FlameSpeedBlock.F90,
FlameSpeedBlockCyl.F90, FlameSpeedBlockSph.F90, Makefile,
SubgridFlameSpeedCar.F90, SubgridFlameSpeedCyl.F90,
SubgridFlameSpeedSph.F90: Renaming subroutines and files from
FlameSpeedBlock*.F90 to SubgridFlameSpeed*.F90
2003-12-02 13:20 nata
* source/source_terms/burn_nse/: burn_block.F90, burn_nse.F90:
Moving limiting from burn_block.F90 to burn_nse.F90
2003-12-02 12:34 nata
* source/source_terms/burn_nse/burn_nse.F90: Changing order of
operations in initializing heat releases (for future variable
composition).
2003-12-02 10:16 nata
* setups/front_tracking_test1/init_block.F90,
setups/front_tracking_test2/init_block.F90,
setups/wd_def/init_block.F90,
source/source_terms/burn_nse/burn_block.F90,
source/source_terms/burn_nse/burn_nse.F90: Changed interface to
nseHeatRelaese. Heat release depends on composition, which might be
variable in the future.
2003-12-02 10:08 freis
* setups/poistest/flash.F90: changed tstamp_logfile to new
stamp_logfile() interface; caused the test to crash last night
2003-12-02 09:33 freis
* source/driver/x_refinement/globalDriver.F90: changed
stamp_logfile() to new interface procedure; it crashed the code
last night as it wasn't up-to-date
2003-12-01 10:40 freis
* source/: driver/time_dep/flash.F90, util/tools/logfile.F90: moved
tstamp_logfile() into stamp_logfile interface block; also added a
scaling factor to real number output to make the numbers more
easily comparable; plus some code cleanup in logfile modules
2003-12-01 10:35 freis
* source/io/amr/hdf5_serial/checkpoint.F90: standardized output to
logfile
2003-11-28 12:54 tomek
* setups/1cyl/init_block.F90: Cosmetic changes.
2003-11-26 13:33 nata
* source/source_terms/burn_nse/: Config, burn_block.F90: Undid the
last chnage and get rid of dependence pf quenching on rpv.
2003-11-26 12:58 nata
* source/source_terms/burn_nse/: Config, burn_block.F90: Changed
hardcoded quenching threshold on rpv to a parameter.
2003-11-25 18:53 tomek
* setups/1cyl/flash.par: Added ref_rect_{x,y}.
2003-11-25 18:17 tomek
* setups/1cyl/: Config, mark_grid_refinement.F90: Changing
rectangle refinement method: size is defined in centimeters
separately in x and y direction.
2003-11-25 16:14 linde
* tools/flash2tec/flash2tec.c: Updated Tecplot converter to work
with hdf5 data files that do or do not contain corner points
2003-11-25 10:10 freis
* source/materials/eos/: helmholtz/eos.F90, gamma/eos.F90: removed
redundant stamp_logfile() calls; will be serialized via
abort_flash()
2003-11-24 17:18 nata
* source/source_terms/burn_nse/: Config, burn_block.F90: Smoother
quenching function, cutoff for rpv1 to prevent it from diffusing
too far, and smallx bug fix (solndata is not a pointer anymore!).
2003-11-24 14:10 freis
* source/util/tools/logfile.F90: redirected write_logfile calls to
stamp_logfile interface
2003-11-24 11:35 freis
* setups/pancake/init_block.F90, source/driver/time_dep/flash.F90:
changed write_logfile calls to stampLogfile and reformatted output
2003-11-24 10:45 freis
* setups/sphcoll/init_block.F90: changed write_logfile calls to
stamp_logfile
2003-11-24 10:27 freis
* setups/sphcoll/InitParticlePositions.F90: changed write_logfile
calls to stamp_logfile
2003-11-24 09:44 freis
* setups/dust_coll_mm/init_block.F90,
source/solvers/poisson/multipole/init_mpole.F90: changed
write_logfile call to stamp_logfile and redid formatting of output
2003-11-23 13:50 tomek
* source/sites/Aliases: Added makefile for IA-64 Itanium running
Linux with Intel compiler. This version is based on Brad's original
Altix makefile. (AFAIK, Altix with ifc 7.1 is useless for FLASH
right now.)
2003-11-23 13:02 tomek
* tools/fidlr2/: Makefile.linux-cetus, Makefile.linux-lavendula:
Makefiles for two local linux boxes.
2003-11-23 11:03 tomek
* setups/1cyl/init_block.F90: Added v3 fit: this one approaches
background level more quickly.
2003-11-21 19:03 tomek
* setups/1cyl/flash.par: Revised to reflect recent setup changes.
2003-11-21 18:55 tomek
* setups/1cyl/mark_grid_refinement.F90: Tie the initial rectangle
position to the cylinder position.
2003-11-21 18:48 tomek
* setups/1cyl/init_block.F90: Added v1 and v2 smooth cylinder fits.
2003-11-21 14:53 nata
* setups/front_tracking_test2/flash.par.wd: added parameter
settings for floor values like in wd_def
2003-11-21 14:38 nata
* source/source_terms/burn_nse/burn_nse.F90: taking into account
lost energy, when switching between stages
2003-11-21 14:18 freis
* setups/dust_coll_mm_cart/init_block.F90: changed write_logfile
calls to stamp_logfile and added 2d string buffer to pass name and
values of init params to logfile
2003-11-21 13:57 freis
* setups/jeans/init_block.F90: changed write_logfile calls to
stamp_logfile and added 2d string buffer to pass name and values of
init params to logfile
2003-11-21 13:20 freis
* source/mesh/ug/init_mesh.F90: standardized output to logfile
2003-11-21 13:13 freis
* setups/sedov/init_block.F90: same as before; something didn't get
saved
2003-11-21 13:08 freis
* source/: driver/time_dep/flash.F90, driver/time_dep/timestep.F90,
mesh/amr/init_mesh.F90: change in output to logfile; put name of
originating module into mesage
2003-11-21 11:40 freis
* setups/dust_coll/init_block.F90, source/util/tools/logfile.F90,
source/util/tools/logfile_request.F90: changed write_logfile calls
to stamp_logfile and added a 2d string_buffer to pass init params
to logfile
2003-11-21 08:48 freis
* setups/: scaling_test/init_block.F90, sedov_ug/init_block.F90:
changed write_logfile call to stamp_logfile
2003-11-21 08:40 freis
* setups/: gwave/init_block.F90,
hypre_test/init_block.F90.poistest, kh_mhd/init_block.F90,
riemann_2d/init_block.F90, shock2cyl_3d/init_block.F90: text
editing for logfile output: changed flash_init tag to run_edit
2003-11-21 08:37 freis
* setups/: sedov_ug/init_block.F90, shockcyl_3d/init_block.F90,
isentropic_vortex/init_block.F90, gas_curtain/init_block.F90,
ppm-new/init_block.F90, cellular/init_block.F90,
windtunnel/init_block.F90, windtunnel/init_block.c,
orszag_tang/init_block.F90,
source_terms_compilation_test/init_block.F90: text editing for
logfile output: changed flash_init tag to run_edit
2003-11-20 12:59 freis
* setups/: gwave_mhd/init_block.F90, poistest/init_block.F90,
rosetta/init_block.F90, soundwave/init_block.F90,
flamegrav/init_mat.F90, 2blast/init_block.F90,
hot_bubble/init_block.F90, briowu/init_block.F90,
sedov_pm3/init_block.F90, sedov_sph/init_block.F90,
nova/init_block.F90, rt_new_pm3/init_block.F90,
3lay/init_block.F90, mach/init_block.F90, 2cyl/init_block.F90,
1cyl/init_block.F90, sod/init_block.F90, sod/init_block.c,
rt/init_block.F90: changed write_logfile call to stamp_logfile, or
removed the use logfile declaration where the module actually
wasn't used
2003-11-20 12:08 freis
* source/util/tools/logfile.F90: fixed var name in print statement
that skipped default tag when to tag was passed to logfile
2003-11-20 11:59 freis
* setups/: cloop_mhd/init_block.F90, detonation/init_block.F90,
evrard/init_block.F90, maclaurin/init_block.F90,
relsod/init_block.F90, relsod/init_block_inhomo.F90,
relsod/init_block_inhomo2.F90, advect/init_block.F90,
rt_new/init_block.F90, rt_mhd/init_block.F90: changed write_logfile
call to stamp_logfile
2003-11-20 11:30 freis
* setups/: hypre_test/init_block.F90.poistest,
kh_mhd/init_block.F90, orszag_tang/init_block.F90,
sn_popiii/init_block.F90, gwave/init_block.F90,
riemann_2d/init_block.F90, shock2cyl_3d/init_block.F90: changed
write_logfile calls to stamp_logfile
2003-11-20 11:00 freis
* setups/: cellular/init_block.F90,
source_terms_compilation_test/init_block.F90,
windtunnel/init_block.F90, windtunnel/init_block.c: changed
write_logfile calls to stamp_logfile
2003-11-20 10:27 freis
* setups/: sedov_ug/init_block.F90, shockcyl_3d/init_block.F90,
isentropic_vortex/init_block.F90, gas_curtain/init_block.F90,
ppm-new/init_block.F90: changed write_logfile calls to
stamp_logfile
2003-11-20 09:27 freis
* source/source_terms/burn_nse/burn_nse.F90: changed write_logfile
calls to stamp_logfile
2003-11-20 09:02 freis
* source/io/amr/hdf5_parallel/checkpoint.F90: added missing 'then'
keyword that cause crash on sphere last night
2003-11-19 18:03 nata
* source/source_terms/burn_nse/: Config, burn_block.F90: Simple
quenching mechanism added.
2003-11-19 17:15 freis
* source/util/tools/logfile_request.F90: I thought I committed this
yesterday, but today I couldn't find a trace of it. Anyway, this
fix, subroutine allocate_string_array, makes sure that every
element in the array is initialized. Lahey in debug mode had
complained about it
2003-11-19 12:35 freis
* source/: materials/composition/fuel+ash/init_mat.F90,
materials/composition/ioniz/init_mat.F90,
source_terms/burn/arrhenius/init_mat.F90,
source_terms/burn/kpp/init_mat.F90,
materials/composition/helium-nickel/init_mat.F90,
materials/composition/3-alpha/init_mat.F90,
materials/composition/aprox19/init_mat.F90,
materials/composition/iso7/init_mat.F90,
materials/composition/ppcno/init_mat.F90,
gravity/poisson/InitGravity.F90: replaced write_logfile calls with
stamp_logfile, or deleted redundant stamp_logfile call if they were
followed by an abort_flash with the same message; also, some of the
init_mat files didn't use abort_flash to stop the program in case
of an error; I replaced stop with abort_flash in these cases
2003-11-19 11:55 freis
* source/solvers/poisson/: multigrid_old/poisson_mg_relax.F90,
multigrid_old/fftcg/poisson_mg_solve.F90,
multigrid_old/isobnd_mpole/init_mpole.F90,
multigrid_old/isobnd_mpole/zone_moments.F90,
multigrid_old/isobnd_mpole/zone_potential.F90,
multigrid_old/isobnd_mpole_opt/init_mpole.F90,
multigrid_old/isobnd_mpole_opt/zone_moments.F90,
multigrid_old/isobnd_mpole_opt/zone_potential.F90, pfm/poisson.F90:
changed write_logfile call to stamp_logfile
2003-11-19 11:38 freis
* source/solvers/poisson/: multipole/zone_potential.F90,
multigrid_old/poisson.F90: change write_logfile calls to
stamp_logfile
2003-11-19 11:05 freis
* source/solvers/poisson/multigrid/: fftcg/poisson_mg_solve.F90,
isobnd_mpole/init_mpole.F90, isobnd_mpole/zone_moments.F90,
isobnd_mpole/zone_potential.F90, isobnd_mpole_opt/init_mpole.F90,
isobnd_mpole_opt/zone_moments.F90,
isobnd_mpole_opt/zone_potential.F90: changed write_logfile calls to
stamp_logfile
2003-11-19 10:48 freis
* source/: particles/InitParticles.F90,
solvers/helmholtz/multigrid/helmholtz.F90,
solvers/poisson/multigrid/poisson.F90,
solvers/poisson/multigrid/poisson_mg_relax.F90,
solvers/poisson/multipole/find_center_of_mass.F90,
solvers/poisson/multipole/init_mpole.F90,
solvers/poisson/multipole/zone_moments.F90: changed write_logfile
calls to stamp_logfile
2003-11-19 09:49 freis
* source/io/amr/: hdf4/plotfile.F90, hdf5_parallel/plotfile.F90,
hdf5_serial/plotfile.F90, ncmpi/plotfile.F90: standardized logfile
tags for plotfile creation and writing
2003-11-19 09:21 freis
* source/io/: amr/hdf4/checkpoint.F90,
amr/hdf5_parallel/checkpoint.F90, amr/hdf5_serial/checkpoint.F90,
amr/ncmpi/checkpoint.F90,
ug/hdf5_parallel/uniformGridII/checkpoint.F90: renamed logfile tags
in checkpoint routines
2003-11-19 08:54 freis
* setups/wd_convect/checkpoint.F90: changed stamp_logfile calls to
new parameter order, including tag name change
2003-11-19 08:24 freis
* setups/sedov/init_block.F90: changed tag name of stamp_logfile
for consistency
2003-11-19 08:21 freis
* setups/globclust/: eos.F90, init_block.F90: changed write_logfile
to stamp_logfile and removed redundant stamp_logfile ,essage
serialized by abort_flash
2003-11-18 17:16 nata
* setups/front_tracking_test2/: Config, flash.par.wd: Added
parameter file for 1-D spherical flame at white dwarf conditions.
2003-11-18 13:26 freis
* source/util/tools/logfile.F90: renamed var My_PE; in conflicted
with a var of the same name in jeans
2003-11-18 12:12 freis
* source/: driver/time_dep/flash.F90,
driver/x_refinement/globalDriver.F90, util/tools/logfile.F90:
changed tstamp_logfile to stamp_logfile; call will be handled by
interface in logfile; tstamp_logfile() is still a logfile
subroutine, just in case there are more calls lurking somewhere,
but it call stamp_logfile in turn
2003-11-18 10:40 freis
* source/io/ug/hdf5_parallel/uniformGridII/checkpoint.F90:
rearranged parameters of stamp_logfile to match new interface;
also, removed use logfile statement from subroutine checkpoint_re
as the module wasn't used
2003-11-18 10:37 freis
* source/io/amr/hdf4/: checkpoint.F90, plotfile.F90: changed
stamp_logfile calls to to new interface
2003-11-18 10:22 freis
* source/io/amr/hdf5_parallel/: checkpoint.F90, plotfile.F90:
rearranged parameters of stamp_logfile to match new interface;
also, removed use logfile statement from subroutine checkpoint_re
as the module wasn't used
2003-11-18 10:16 freis
* source/io/amr/ncmpi/checkpoint.F90: rearranged parameters of
stamp_logfile to match new interface; also, removed use logfile
statement from subroutine checkpoint_re as the module wasn't used
2003-11-18 10:06 freis
* source/io/amr/ncmpi/plotfile.F90: change stamp_logfile calls to
new parameter order
2003-11-18 09:45 freis
* source/materials/composition/prot+elec/init_mat.F90: removed
redundant write_logfile call since error message is logged via
abort_flash already
2003-11-18 09:42 freis
* source/mesh/ug/init_mesh.F90: adjusted stamp_logfile call to new
parameter order
2003-11-18 09:26 freis
* source/materials/eos/perfect_gas+rad/eos.F90: removed
stamp_logfile calls; they were redundant since the error messages
are logged via the abort_flash() call already
2003-11-18 09:21 freis
* source/materials/composition/aprox13/init_mat.F90: deleted use
logfile declaration since the module doesn't use it
2003-11-18 01:24 tomek
* setups/1cyl/flash.par: Cleaned up version.
2003-11-18 01:23 tomek
* setups/1cyl/: Config, init_block.F90, mark_grid_refinement.F90:
Updated, merged, and cleaned up production version.
2003-11-17 21:07 vikram
* setups/1cyl/flash.par: [no log message]
2003-11-17 17:48 nata
* setups/wd_def/: Config, Config.1d_sph, Config.2d_cyl,
Config.3d_car: Switched the order of C-O-Mg and iso7 compositions
in OR statement to make Configs and flash.par's compartible.
2003-11-17 17:12 nata
* source/source_terms/burn_nse/burn_nse.F90: added checking for
consistence of runtime parameters during initialization
2003-11-17 16:40 freis
* source/util/tools/logfile.F90: fix bug that may have assigned a
string to an optional parameter
2003-11-17 13:00 freis
* setups/sedov/init_block.F90, source/driver/abort_flash.F90,
source/driver/time_dep/flash.F90,
source/driver/time_dep/timestep.F90,
source/io/amr/hdf5_serial/checkpoint.F90,
source/io/amr/hdf5_serial/plotfile.F90,
source/mesh/amr/init_mesh.F90: change parameter order in
stamp_logfile calls to match new interface
2003-11-17 12:00 freis
* source/: driver/end_flash.F90,
mesh/amr/paramesh2.0/amr_refine_derefine.F90: changed stamp_logfile
calls to new parameter order
2003-11-17 11:59 freis
* source/util/tools/logfile.F90: simplified interface of
stamp_logfile for string data; interface now expects string_data,
tag, attrib, where tag and attrib are optional; this may make
entries in logfile look different since a large number of
stamp_logfile call have to be changed to the new order
2003-11-15 16:17 tomek
* setups/wd_def/: Config, Config.1d_sph, Config.2d_cyl,
Config.3d_car, flash.par, flash.par.1d_sph, flash.par.2d_cyl,
flash.par.3d_car: Fixed generic Config version; cosmetic changes in
par files.
2003-11-15 15:29 tomek
* source/materials/composition/Config: Update EXCLUSIVE list.
2003-11-15 15:28 tomek
*
source/mesh/amr/paramesh2.0/quadratic_spherical/amr_prolong_gen_unk
_fun.F90: Prevent out of bounds error in y-direction when run in
1-D.
2003-11-15 15:26 tomek
* source/util/front_tracking/: AdvanceTrackerDRsph.F90,
FlameSpeedBlockSph.F90: Guard against divZero in geomtry terms when
run in 1-D.
2003-11-14 18:39 vikram
* setups/2cyl/: s12_original.tif, s15_original.tif,
s20_original.tif: [no log message]
2003-11-14 15:16 tomek
* source/sites/cetus.asci.uchicago.edu/: Makefile.h,
Makefile.h-lf95: Following Dan's modification (2003-10-31), changed
--dbl to -CcdRR8 for plotfiles to work with lahey.
2003-11-14 12:04 nata
* setups/wd_def/: Config, Config.1d_sph, Config.2d_cyl,
Config.3d_car, flash.par, flash.par.1d_sph, flash.par.2d_cyl,
flash.par.3d_car: Parameters files are set up to match Oct 2003 big
run with increased (2.5 km) resolution. The Configs are updated
for multi-stage energetics.
2003-11-14 11:33 freis
* source/util/tools/logfile.F90: added procedure to stamp_logfile
interface to handle arbitrary length string messages
2003-11-13 21:17 tomek
* source/hydro/explicit/split/ppm/avisco.F90: Guard against divZero
fp exception in spherical geometry (Sedov crashes when compiled
with debug). Other geomtry cases should be modified as well.
2003-11-13 21:15 tomek
* source/sites/cetus.asci.uchicago.edu/: Makefile.h,
Makefile.h-lf95: Revised version of Makefile for lahey compiler on
cetus.
2003-11-13 19:54 tomek
* source/hydro/: Config, Makefile, hydroModule.F90,
explicit/split/Makefile, explicit/split/update_soln.F90,
explicit/split/ppm/Config, explicit/split/ppm/Makefile,
explicit/split/ppm/PPMData.F90, explicit/split/ppm/hydro_1d.F90,
explicit/split/ppm/intrfc.F90: Added hydroModule to make common
use_* switches available across all hydro solvers. Other common
switches/flags should be treated in similar way in the future.
2003-11-13 17:17 calder
* source/hydro/explicit/split/Makefile:
Took out the dependence on PPMData.o because the file does not
appear in the ppm-rhd directory. In the ppm directory, there is a
dependence, so it should be ok.
2003-11-13 16:01 nata
* source/source_terms/burn_nse/burn_nse.F90: bug fix: the third
r.p.v. was initialized to wrong value.
2003-11-13 09:49 freis
* source/mesh/amr/paramesh2.0/amr_refine_derefine.F90: removed
empty string passed to stamp_logfile
2003-11-13 09:30 freis
* source/util/tools/logfile.F90: synchronized stamp_logfile
interfaces in logfile and datalog/logfile modules
2003-11-12 12:36 freis
* source/: driver/time_dep/flash.F90,
io/amr/hdf5_serial/checkpoint.F90, util/tools/logfile_request.F90:
added module procedures to logfile interface stamp_logfile
2003-11-12 09:06 tomek
* docs/flash/users_guide/hydro.tex: Typo in the LHS of the viscous
transport equation.
2003-11-11 13:18 sheeler
* docs/flash/users_guide/solvers.tex: residual equation for
multigrid had an index error
2003-11-10 18:47 sheeler
* source/io/amr/hdf5_parallel/: checkpoint.F90,
h5_parallel_write.c, plotfile.F90: reintroducing processor number
dataset
2003-11-10 18:02 sheeler
* tools/fidlr2/h5_wrappers.c: test for proc number existence to
avoid a crash
2003-11-10 17:53 nata
* setups/wd_def/: Config, flash.par: Changed setup for testing new
energetics in 2-d cooorinates.
2003-11-10 17:18 sheeler
* tools/fidlr2/show_proc_distribution.pro: for plotting parallel
block distribution
2003-11-10 17:15 sheeler
* tools/fidlr2/get_lrefine_max_min.pro: function for proc
distribution
2003-11-10 17:11 sheeler
* tools/fidlr2/: xflash.pro, xplot_amr_new.pro: adding proc dist
support
2003-11-10 17:05 sheeler
* tools/fidlr2/: h5_wrappers.c, read_amr_hdf5.pro: adding processor
number support
2003-11-10 17:00 sheeler
* tools/fidlr2/draw_blocks.pro: change for coloring block
distribution
2003-11-09 20:53 tomek
* source/mesh/amr/paramesh2.0/amr_restrict_work_fun.F90: Oops...
copy and paste problem for 3-d spherical case. A number of tests
failed.
2003-11-08 15:53 nata
* source/source_terms/burn_nse/: Config, burn_block.F90,
burn_nse.F90: Leaving all attempts to do variable initial
composition for now. Using new subroutine "nseBurnBlockCC", which
works with constant initial composition only.
2003-11-06 09:54 freis
* source/util/tools/logfile.F90: removed MPI calls, except during
create_logfile(), and replaced them with database calls to check
for master proc and local proc id
2003-11-05 18:44 tomek
* source/mesh/amr/paramesh2.0/: amr_restrict_unk_fun.F90,
amr_restrict_work_fun.F90: Simplifying volumes in polar
coordinates. Note: we do not need real volumes, but their relative
values must be correct.
2003-11-05 14:33 tomek
* source/sites/cetus.asci.uchicago.edu/: Makefile.h,
Makefile.h-lf95: Make lahey compiler default on cetus; revise
corresponding Makefile.
2003-11-05 14:20 tomek
* source/sites/thunder1/Makefile.h~: [no log message]
2003-11-05 14:05 tomek
* source/mesh/amr/paramesh2.0/: amr_restrict_red.F90,
amr_restrict_unk_fun.F90, amr_restrict_work_fun.F90: Add
preliminary support for polar geometry.
2003-11-05 13:54 tomek
* source/hydro/explicit/split/ppm/intrfc.F90: Restrict index range
for modified pressure profiles to avoid accessing unitialized data.
2003-11-05 13:52 tomek
* source/hydro/explicit/split/ppm/hydro_1d.F90: Restrict the index
range for species loop to avoid use of uninitialized data.
2003-11-04 19:09 vikram
* setups/1cyl/single_original.tif: [no log message]
2003-11-04 18:36 zingale
* source/database/amr/dBaseDeclarations.F90: fix an out-of-bounds
problem in the advect and conversed variable count -- they were not
leaving room for the species
2003-11-04 18:23 sheeler
* source/hydro/explicit/split/Makefile: missing PPMData dependency.
2003-11-04 18:14 zingale
*
source/mesh/amr/paramesh2.0/quadratic_spherical/amr_prolong_gen_unk
_fun.F90: fix an out-of-bounds problem
2003-11-04 11:36 freis
* source/driver/time_dep/timestep.F90: just forgot empty string for
attributes
2003-11-04 11:23 freis
* source/materials/composition/aprox13/init_mat.F90: removed
write_logfile call; error message will be printed to logfile via
abort_flash() call
2003-11-04 11:22 freis
* source/driver/time_dep/timestep.F90: switched write_logfile to
stamp_logfile
2003-11-04 10:25 freis
* source/driver/abort_flash.F90: modified output messages
2003-11-04 09:34 freis
* source/: mesh/amr/paramesh2.0/amr_refine_derefine.F90,
util/tools/logfile.F90: added max_blocks and min_blocks to
refinement log entry; includes a new interface procedure that
prints a string array to the logfile via stamp_logfile()
2003-11-04 09:07 freis
* source/driver/end_flash.F90: moved MPI_finalize to the very end
after the last logfile call; logfile still needs MPI
2003-11-03 15:21 caceres
* source/mesh/amr/Makefile: init_paramesh_arrays.o was showing up
twice in the link line, caused some compilers to fail.
2003-10-31 12:48 sheeler
* source/sites/lahey_gin.asci.uchicago.edu/Makefile.h: changed
--dbl to -CcdRR8 so plotfiles will work with lahey. -CcdRR8 is an
undocumented switch that only promotes default reals to double
precision as opposed to --dbl which promotes even those specified
with kind. Let's hope lahey never takes it away.
2003-10-31 11:55 freis
* source/driver/end_flash.F90, source/mesh/amr/init_mesh.F90,
source/mesh/ug/init_mesh.F90, setups/sedov/init_block.F90: updated
calls to logfile interface
2003-10-31 10:23 freis
* source/: io/amr/hdf5_serial/checkpoint.F90,
io/amr/hdf5_serial/plotfile.F90, util/tools/logfile.F90: updated
calls to logfile interface
2003-10-31 08:16 freis
* source/: driver/time_dep/flash.F90,
mesh/amr/paramesh2.0/amr_refine_derefine.F90,
util/tools/logfile.F90: standardized calls to logfile interface
2003-10-30 11:50 kmriley
* source/database/ug/dBase.int: need the global pointer for mesh
work.
2003-10-30 11:45 kmriley
* source/mesh/: Makefile, init_paramesh_arrays.F90: this is being
moved up to avoid needing redundant init scripts. we could rename
it to mask the parameshyness
2003-10-30 11:30 kmriley
* source/: database/ug/dBase.F90, database/ug/dBase.int,
database/ug/dBaseProperties.F90,
database/ug/uniformGridII/physicaldata.F90,
io/ug/hdf5_parallel/uniformGridII/checkpoint.F90,
mesh/ug/uniformGridII/tot_bnd.F90: i apparently forgot to commit
some updates for the UG with the new dbase changes
2003-10-29 14:58 kmriley
*
source/mesh/amr/paramesh3.0/source/amr_1blk_cc_prol_gen_work_fun.F:
typo in the if statement - the first if was missing a then
2003-10-29 14:53 kmriley
* source/mesh/amr/paramesh3.0/: flash_physicaldata.F90,
init_flash_physicaldata.F90, user_bnd.F90: just some fixups that i
must have forgotten to commit - to make pm3 play well with the
database changes from a bit ago
2003-10-29 14:48 kmriley
* source/mesh/amr/paramesh3.0/mark_grid_refinement.F90: should be
able to use the general amr one for now
2003-10-29 14:45 nata
* source/util/front_tracking/rhjump.F90: commented out that
annoying debugging print statement
2003-10-29 09:43 olson
* source/mesh/amr/paramesh3.0/: headers/mpi_morton.F,
headers/paramesh_interfaces.F, headers/paramesh_preprocessor.fh,
mpi_source/mpi_amr_refine_derefine.F, mpi_source/mpi_lib.F,
mpi_source/mpi_morton_bnd.F,
source/amr_1blk_cc_prol_gen_work_fun.F,
source/amr_1blk_cc_prol_genorder.F,
source/amr_1blk_cc_prol_linear.F,
source/amr_1blk_cc_prol_work_genorder.F,
source/amr_1blk_ec_prol_genorder.F,
source/amr_1blk_fc_prol_genorder.F,
source/amr_1blk_nc_prol_genorder.F, source/amr_system_calls.F:
Replacing old with new.
2003-10-29 09:40 olson
* source/mesh/amr/paramesh3.0/: Config, Makefile, amr_1blk_bcset.F,
flash_physicaldata.F90, init_flash_physicaldata.F90,
init_paramesh_arrays.F90, mark_grid_refinement.F90,
mesh_interface.F90, ref_marking.F90, restrict_tree.F90,
tot_bnd.F90, user_bnd.F90: Replacing old files with new for support
of mulgrid.
2003-10-29 09:26 olson
* source/mesh/amr/paramesh3.0/: Config, Makefile,
PARAMESH_USERS_AGREEMENT, README, amr_1blk_bcset.F,
flash_physicaldata.F90, get_tree_nodetypes.F90,
init_flash_physicaldata.F90, init_paramesh_arrays.F90,
mark_grid_refinement.F90, mesh_interface.F90, ref_marking.F90,
restrict_tree.F90, tot_bnd.F90, user_bnd.F90: Replacing old files
with updated files to support multigrid.
2003-10-29 09:02 olson
* source/mesh/solvers/multigrid_pm3.0/: Makefile,
amr_1blk_cc_prol_gen_work_fun.F, amr_1blk_cc_prol_work_mg.F,
mg_bndry.F90, mg_common.F90, mg_copy.F90, mg_correct.F90,
mg_cycle.F90, mg_guardcell.F90, mg_init.F90, mg_init_src.F90,
mg_norm.F90, mg_precond.F90, mg_prolong.F90,
mg_restore_nodetypes.F90, mg_restrict.F90, mg_set_ext_bndry.F90,
mg_write.F90, mg_zero.F90, multigrid.F90: Replacing old files in
this directory with updated versions.
2003-10-29 08:59 olson
* source/mesh/solvers/multigrid_pm3.0/: Makefile, mg_bndry.F90,
mg_common.F90, mg_copy.F90, mg_correct.F90, mg_cycle.F90,
mg_guardcell.F90, mg_init.F90, mg_init_src.F90, mg_norm.F90,
mg_precond.F90, mg_prolong.F90, mg_restore_nodetypes.F90,
mg_restrict.F90, mg_set_ext_bndry.F90, mg_write.F90, mg_zero.F90,
multigrid.F90: Replacing these file with up to date files. KMO
2003-10-28 16:40 nata
* setups/wd_def/: Makefile, wr_integrals.F90: added more
diagnostics (maybe too much), including burned mass and flame area
2003-10-28 16:38 nata
* source/util/front_tracking/front_tracking.F90: added subroutine
ftReactionRate (before we had only ftReactionRateBlock)
2003-10-28 16:36 nata
* source/database/dBaseKey.F90: made dBaseSpecies and
dBaseVolScalars to return -1 if index is out of range
2003-10-28 16:15 sheeler
* source/mesh/solvers/multigrid/mg_bndry.F90: apparently, paramesh
doesn't like it when you ask for corners in 1d.
2003-10-28 10:57 freis
* source/util/tools/logfile.F90: added interface block to logfile
as a bridge to Fortran and C logfile modules
2003-10-27 23:53 ricker
* setups/pancake/: InitParticlePositions.F90, init_block.F90: Some
bug fixes in the pancake initial conditions.
2003-10-27 17:16 nata
* source/source_terms/burn_nse/burn_block.F90: a minor debugging
comment
2003-10-27 14:48 nata
* source/: source_terms/burn_nse/burn_block.F90,
util/front_tracking/front_tracking.F90: redefining epsilons
2003-10-27 12:35 nata
* source/source_terms/burn_nse/: Config, Makefile, burn_nse.F90:
cleaning up.
2003-10-24 13:58 nata
* source/source_terms/burn_nse/: burn_block.F90, burn_nse.F90:
Burning to nqse and nse added.
2003-10-23 17:51 sheeler
* source/solvers/poisson/multigrid/: poisson_mg_relax.F90,
poisson_mg_residual.F90: made timers usable by #define instead of
commented out.
2003-10-23 17:49 sheeler
* source/mesh/solvers/multigrid/mg_cycle.F90: removed unnecessary
mype and masterpe variables
2003-10-23 17:43 nata
* setups/wd_def/init_block.F90,
source/source_terms/burn_nse/K2000_nsqe.F90,
source/source_terms/burn_nse/Makefile,
source/source_terms/burn_nse/burn_block.F90,
source/source_terms/burn_nse/burn_nse.F90: started another approach
to variable composition
2003-10-23 16:55 sheeler
* source/mesh/solvers/multigrid/: mg_bndry.F90, mg_cycle.F90,
mg_guardcell.F90, mg_output.F90, mg_prolong.F90,
mg_restore_nodetypes.F90: making timers usable with a #define
instead of having them just commented
2003-10-23 16:32 nata
* source/: source_terms/burn_nse/burn_block.F90,
util/front_tracking/AdvanceTrackerADR.F90,
util/front_tracking/AdvanceTrackerDR.F90,
util/front_tracking/AdvanceTrackerDRcyl.F90,
util/front_tracking/AdvanceTrackerDRsph.F90,
util/front_tracking/Config: Moved update of phi to burn_block.
2003-10-23 09:25 tomek
* source/hydro/explicit/split/: update_soln.F90, ppm/hydro_1d.F90:
Removing geomfc factor incorrectly introduced to account for
distance change in pressure gradient calculation in spherical
geometry. This term is already incorporated in geometrical terms
(projected volumes and areas) in advection equations. After Ewald
Mueller's PROMETHEUS bug report.
2003-10-22 16:40 tomek
* source/sites/cetus.asci.uchicago.edu/Makefile.h-lf95: Makefile
for lahey 6.2 on Linux RedHat 7.3.
2003-10-22 16:23 nata
* setups/front_tracking_test2/: Config, composition_C-O-Mg.dat,
composition_fuel+ash.dat, flash.par, flash.par.cart3d,
flash.par.cyl2d, init_block.F90: moving toward more complex
compositions
2003-10-22 16:21 nata
* setups/wd_def/: flash.par, init_block.F90: moving torward more
complex compositions
2003-10-22 16:19 nata
* source/source_terms/burn_nse/Config,
source/source_terms/burn_nse/Makefile,
source/source_terms/burn_nse/burn_block.F90,
source/source_terms/burn_nse/burn_nse.F90,
setups/wd_def/composition_C-O-Mg.dat: moving toward more complex
compositions
2003-10-22 11:56 freis
* source/util/wrapping/int2API.py: Ommitted the comment line with
function prototypes in ...API-bridges.F90. It crashed twith the
PG compiler when the line got very long
2003-10-21 14:16 sheeler
* source/mesh/solvers/multigrid/: Makefile, mg_output.F90: adding a
routine that will write a plotfile without restricting data-- good
for examining data as it is on interior nodes and just getting a
plotfile whenever it's needed for debugging.
2003-10-21 12:58 freis
* source/util/tools/logfile.F90: added MPI proccessor test to all
writing routines to logfile
2003-10-21 10:06 nata
* source/util/front_tracking/: AdvanceTrackerADR.F90,
AdvanceTrackerDR.F90, AdvanceTrackerDRcyl.F90,
AdvanceTrackerDRsph.F90: Removed non-needed "use dBaseVolScalars".
2003-10-21 10:05 nata
* source/util/front_tracking/: Makefile, StateFromPhi.F90: Removed
file StateFromPhi.F90
2003-10-20 17:31 nata
* source/source_terms/burn_nse/: Config, K2000_nsqe.F90, Makefile,
burn_block.F90: Partial framework for adding heat release due to
transition to NSQE.
2003-10-20 14:10 nata
* source/source_terms/burn_nse/burn_block.F90:
Removed iterational computing of unburned state.
2003-10-17 16:04 freis
* source/util/tools/logfile_request.F90: contains additonal
function called by datalog/logfile.c
2003-10-17 15:38 nata
* source/util/front_tracking/: Config, front_tracking.F90:
Introduced parameter ft_a - the factor in the input flame speed,
wich allows to correct, for example, for compessiblity effects.
Intended for use mostly in tests.
2003-10-15 18:48 freis
* source/util/tools/Makefile: deleted rule for logfile_writer.F90;
file was released
2003-10-15 18:34 freis
* source/util/tools/logfile_writer.F90: design change; logfile is
not longer needed
2003-10-13 17:31 jbgallag
* tools/io_bench/ncmpi/: ncmpi_parallel_write.c,
ncmpi_parallel_write_single.c: fixed some type errors
2003-10-13 17:25 jbgallag
* tools/io_bench/ncmpi/Makefile.sphere: new makefile for sphere
2003-10-13 16:25 freis
* source/util/tools/: logfile.F90, perfmon.F90: add comment to
clarify meaning of var that indexes into string arrays
2003-10-11 15:14 jbgallag
* tools/io_bench/ncmpi/ncmpi_parallel_write_single.c: replaced old
nc_ functions with ncmpi_ functions
2003-10-11 15:14 jbgallag
* tools/io_bench/ncmpi/ncmpi_parallel_write.c: replaced old nc_
functions with corresponding ncmpi_ functions
2003-10-11 15:13 jbgallag
* tools/io_bench/ncmpi/ncmpi_file_interface.c: replaced old nc_
function with corresponding ncmpi_ functions
2003-10-10 11:37 freis
* source/util/tools/logfile.F90: changed module call from
logfile_bridge to logfile_request due to name change
2003-10-10 11:32 freis
* source/util/tools/Makefile: changed dependencies due to name
change of logfile_request and addition of logfile_writer
2003-10-10 11:30 freis
* source/util/tools/logfile_writer.F90: added a wrapper to handle
string passing to the logfile; this is for future use and doesn't
do anything right now
2003-10-10 11:29 freis
* source/util/tools/logfile_request.F90: renamed module, formerly
logfile_bridge
2003-10-10 11:27 freis
* source/util/tools/logfile_bridge.F90: renaming logfile_bridge.F90
to logfile_request.F90 to avoid confusion with APIbridges
2003-10-10 11:16 freis
* source/driver/init_flash.F90: moved create_logfile; it needs to
come before init_mesh, which writes to the logfile
2003-10-10 00:39 sheeler
* source/sites/Aliases: recognize mcr
2003-10-09 17:10 tomek
* setups/xrb_spread/init_block.F90: A pointer for data instead of
solndata should be released.
2003-10-09 10:56 freis
* source/util/tools/: logfile.F90, logfile_bridge.F90: added a
subroutine to set an end_of_line character to output strings in
logfile_bridge.F90; this is purely for future compatibility and now
actually isn't called by the logfile module
2003-10-09 08:56 freis
* source/util/tools/logfile_bridge.F90: fixed array subscripts in
logfile_bridge.F90 to avoid crashes on flashviz
2003-10-08 17:18 tomek
* setups/dust_coll/mark_grid_refinement.F90: Wrong block index name
was used to mark blocks for refinement.
2003-10-08 15:10 freis
* source/util/tools/: logfile.F90, logfile_bridge.F90, perfmon.F90:
changes to interfaces in logfile_bride.F90 to make it compatible
with new logfile
2003-10-08 13:06 tomek
* setups/dust_coll_mm_cart/init_block.F90: Added missing reference
to dBaseReleaseDataPtrSingleBblock.
2003-10-08 11:13 sheeler
* source/util/tools/PAPI/perfmon.F90: really need to have some
mflops numbers printing out, but don't have the time to get it in
the normal log file. I've cut and pasted the old version of this
file that printed the performance summary directly to the logfile,
and I'm just printing that to a seperate file, "papi.log".
2003-10-07 11:06 nata
* source/hydro/explicit/split/update_soln.F90,
source/hydro/explicit/split/ppm/Config,
source/hydro/explicit/split/ppm/PPMData.F90,
source/hydro/explicit/split/ppm/PPMInit.F90,
source/hydro/explicit/split/ppm/hydro_1d.F90,
source/source_terms/burn_nse/burn_block.F90,
source/util/front_tracking/Config,
setups/front_tracking_test1/init_block.F90,
setups/front_tracking_test2/flash.par,
setups/front_tracking_test2/flash.par.cart3d,
setups/front_tracking_test2/flash.par.cyl2d,
setups/front_tracking_test2/init_block.F90, setups/wd_def/Config,
setups/wd_def/Config.1d_sph, setups/wd_def/Config.2d_cyl,
setups/wd_def/Config.3d_car, setups/wd_def/flash.par,
setups/wd_def/init_block.F90,
setups/wd_def/mark_grid_refinement.F90:
Changing the content of volume scalar variable from rho*phi to phi.
The obsolete parameters: vscalar_follow_density (always true now)
and ft_use_hydro (always true now). The obsolete database variable:
"rpv" (use "vs_1" instead).
2003-10-06 11:02 kmriley
* source/driver/: time_dep/tstep_temperature_precompute.F90,
x_refinement/tstep_temperature_precompute.F90: i thought i
committed this fix. i could swear i did. anyway - includes the
right scratch pointer file now
2003-10-03 10:53 kmriley
* setups/rt_new/numerical_noise.c: the routine does nothing right
nwo, so, i just commented it all out. especially the global
pointer bits
2003-10-03 10:37 kmriley
* source/hydro/explicit/delta_form/kurganov/hydro_3d.F90: typo in
use
2003-10-03 10:34 kmriley
* setups/dust_coll_mm_cart/mark_grid_refinement.F90: one hunk of
block indices were not removed
2003-10-03 10:28 kmriley
* source/driver/x_refinement/tstep_temperature_precompute.F90: ah -
confusion in the use statements. i'll have to fix the get ptr to
scratch areas tooe eventually
2003-10-03 01:04 sheeler
* source/solvers/poisson/multigrid/poisson_mg_residual.F90: typo
after last commit.
2003-10-03 00:55 sheeler
* source/mesh/solvers/multigrid/: mg_guardcell.F90, mg_prolong.F90:
intel complained about some variables with same name as database
vars.
2003-10-03 00:52 sheeler
* source/solvers/poisson/multigrid/: poisson.F90,
poisson_image_mass.F90, poisson_mg_relax.F90,
poisson_mg_residual.F90, fftcg/poisson_mg_solve.F90: intel compiler
was complaining about redeclared variables from the dbase.
2003-10-02 17:36 sheeler
* source/mesh/solvers/multigrid/mg_init.F90: intel compiler
complaining about redefined parameters when variables have same
names as in dBase.
2003-10-02 17:30 kmriley
* setups/: orbit/ref_marking.F90, pancake/mark_grid_refinement.F90:
[no log message]
2003-10-02 17:26 kmriley
* setups/: mag_bubble/init_block.F90, matchhead/init_block.F90: [no
log message]
2003-10-02 16:33 kmriley
* setups/hot_bubble_isot/init_block.F90: dropped gc
2003-10-02 15:28 kmriley
* setups/evrard/init_block.F90: hmmm - fucntion names wrong.
missing PTR
2003-10-02 15:24 kmriley
* setups/: dust_coll_mm/init_block.F90,
dust_coll_mm_cart/init_block.F90: fixing index to data
2003-10-02 15:20 kmriley
* setups/cloop_mhd/zcurrent.F90: include GC
2003-10-02 14:30 kmriley
* source/database/amr/dBaseDeclarations.F90: trying to get GC and
NGC to stick in CVS
2003-10-02 14:18 kmriley
* setups/: sample_map/init_block.F90, stirturb/wr_integrals.F90:
and even more
2003-10-01 21:29 kmriley
* setups/eos_test/init_from_scratch.F90,
setups/t1a_convect/hydro_sweep.F90, setups/1cyl/init_block.F90,
setups/1cyl/mark_grid_refinement.F90,
setups/2cyl/mark_grid_refinement.F90,
setups/dust_coll/init_block.F90,
setups/dust_coll/mark_grid_refinement.F90,
setups/dust_coll_mm_cart/mark_grid_refinement.F90,
setups/flame_vortex2/mark_grid_refinement.F90,
setups/globclust/mark_grid_refinement.F90,
setups/ld/init_block.F90, setups/ld/mark_grid_refinement.F90,
setups/lss_read/mark_grid_refinement.F90,
setups/maclaurin/mark_grid_refinement.F90,
setups/hse_isothermal_atm/init_block.F90,
setups/hse_isothermal_fuel+ash/init_block.F90,
setups/isentropic_vortex/init_from_scratch.F90,
setups/jeans/ref_marking.F90, setups/kppburntest/wr_integrals.F90,
source/cosmology/RedshiftHydro.F90,
source/particles/mapping/MapParticlesToMesh.F90,
source/particles/mapping/MeshToParticle.F90: oh dear god the number
of typos
2003-10-01 19:50 kmriley
* source/database/: dBaseData.F90, dBaseDataByPointer.F90,
amr/paramesh2.0/dBase.F90: leaving the full path open for the
allblocks pointer. ill yank it later, but, for now i am not sure
how it will kill the multigrid
2003-10-01 19:17 kmriley
*
source/mesh/amr/paramesh2.0/insertion/amr_prolong_gen_unk_fun.F90,
source/mesh/amr/paramesh2.0/insertion/amr_prolong_gen_work_fun.F90,
source/mesh/amr/paramesh2.0/quadratic_cylindrical/amr_prolong_gen_u
nk_fun.F90,
source/mesh/amr/paramesh2.0/quadratic_cylindrical/amr_prolong_gen_w
ork_fun.F90, source/mesh/amr/paramesh3.0/mark_grid_refinement.F90,
setups/cloop_mhd/mark_grid_refinement.F90,
setups/pancake/mark_grid_refinement.F90: a few more missed global
pointer
2003-10-01 18:51 kmriley
* source/: gravity/poisson/GravPotentialAllBlocks.F90,
mesh/amr/paramesh2.0/quadratic_spherical/amr_prolong_gen_unk_fun.F9
0,
mesh/amr/paramesh2.0/quadratic_spherical/amr_prolong_gen_work_fun.F
90, source_terms/burn_nse/burnModule.F90: more changes - i think i
need to touch all the geometry routines now
2003-10-01 18:29 kmriley
* source/: database/amr/paramesh2.0/dBase.int,
source_terms/burn/burnModule.F90: more fixes - interfaces with GC
2003-10-01 17:41 kmriley
* source/: driver/time_dep/tstep_temperature_precompute.F90,
hydro/explicit/euler_ms/ppm/hydro.F90, hydro/hall_mhd/hall2d.F90,
mesh/amr/mark_grid_refinement.F90,
mesh/amr/paramesh2.0/tot_bnd.F90,
database/amr/paramesh2.0/dBase.F90,
database/amr/paramesh2.0/dBase.int,
database/amr/paramesh3.0/dBase.F90, database/ug/dBase.F90,
database/ug/uniformGridII/dBaseDeclarations.F90: typos in the
fixing. there will be more
2003-10-01 15:53 kmriley
* source/: cosmology/RedshiftHydro.F90,
database/dBaseDataByPointer.F90,
driver/x_refinement/fluxcorrect.F90,
hydro/explicit/delta_form/kurganov/hydro_3d.F90,
hydro/explicit/shock_detect.F90,
hydro/explicit/euler_ms/ppm/grdvel.F90,
hydro/explicit/split/ppm/diffuse/species_explicit.F90,
hydro/explicit/split/ppm/diffuse/therm_explicit.F90,
hydro/explicit/split/ppm/diffuse/visc_explicit.F90,
hydro/explicit/split/hydro_sweep.F90,
hydro/explicit/split/ppm/grdvel.F90,
hydro/explicit/split/ppm-rhd/grdvel.F90, io/user_var.F90,
io/wr_integrals.F90, materials/abundance_renorm.F90,
materials/abundance_restrict.F90, mesh/amr/paramesh2.0/tot_bnd.F90,
mesh/ug/tot_bnd.F90, mesh/ug/uniformGridII/tot_bnd.F90,
particles/mapping/cic_1dsph/MeshToParticle.F90,
particles/mapping/cic_2dcylaxi/MeshToParticle.F90,
solvers/poisson/multigrid/poisson_image_mass.F90,
solvers/poisson/multigrid/fftcg/poisson_mg_solve.F90,
solvers/poisson/multigrid/isobnd_mpole/compute_mpole_moments.F90,
solvers/poisson/multigrid/isobnd_mpole/compute_mpole_potential.F90,
solvers/poisson/multigrid/isobnd_mpole/find_center_of_mass.F90,
solvers/poisson/multigrid/isobnd_mpole_opt/compute_mpole_moments.F9
0,
solvers/poisson/multigrid/isobnd_mpole_opt/compute_mpole_potential.
F90,
solvers/poisson/multigrid/isobnd_mpole_opt/find_center_of_mass.F90,
solvers/poisson/multipole/compute_mpole_moments.F90,
solvers/poisson/multipole/compute_mpole_potential.F90,
solvers/poisson/multipole/find_center_of_mass.F90,
source_terms/burn/burnModule.F90, source_terms/burn/tstep_burn.F90,
source_terms/burn_nse/burnModule.F90, util/perturb/perturbLib.F90:
all the source with pointers to single blocks. okay, no
multigrid_old, dealing what that later. interfaces updated plue
the release call
2003-10-01 11:06 kmriley
* setups/: burntest/burnModule.F90, burntest/wr_integrals.F90,
cloop_mhd/init_block.F90, cloop_mhd/wr_integrals.F90,
detonation/init_block.F90, eos_test/init_block.F90,
flame_map/init_block.F90, flame_shear/init_block.F90,
flame_shear/wr_integrals.F90, flame_vortex2/init_block.F90,
flamecurvature/user_var.F90, flamegrav/init_block.F90,
front_tracking_test1/wr_integrals.F90,
hallmhd2d_test/init_block.F90, helix/init_block.F90,
hot_bubble_isot/init_block.F90, hse_isothermal_atm/init_block.F90,
hse_isothermal_fuel+ash/init_block.F90,
kppburntest/wr_integrals.F90, ld/init_block.F90,
mag_bubble/init_block.F90, matchhead/init_block.F90,
matchhead_1d/init_block.F90, nova/tot_bnd.F90,
orbit/init_block.F90, orszag_tang/init_block.F90,
rosetta/init_block.F90, sample_map/init_block.F90,
stirturb/wr_integrals.F90, t1a_convect/hydro_sweep.F90,
t1a_convect/init_block.F90, wd_convect/burnModule.F90,
wd_convect/hydro_sweep.F90, wd_convect/init_block.F90,
wd_crushturbulence/wr_integrals.F90, wd_def/wr_integrals.F90,
wdc/init_block.F90, xrb_hse_test/init_block.F90,
xrb_spread/init_block.F90: all the setups with pointers to single
blocks. i updated their interfaces and added the release call
2003-09-30 19:29 kmriley
* source/database/: dBaseData.F90, dBaseDataByPointer.F90,
amr/paramesh2.0/dBase.F90, amr/paramesh3.0/dBase.F90: appropriate
dBase changes cutting off the global pointer and opening up the
release of the pointer
2003-09-30 19:03 kmriley
* source/driver/init_from_scratch.F90,
source/mesh/amr/mark_grid_refinement.F90,
source/particles/mapping/MapParticlesToMesh.F90,
source/solvers/poisson/hypre_PFMG/poisson.F90,
source/solvers/poisson/pfm/poisson.F90,
setups/1cyl/mark_grid_refinement.F90,
setups/2cyl/mark_grid_refinement.F90,
setups/dust_coll/mark_grid_refinement.F90,
setups/dust_coll_mm_cart/mark_grid_refinement.F90,
setups/flame_vortex2/mark_grid_refinement.F90,
setups/globclust/mark_grid_refinement.F90,
setups/hypre_test/flash.F90, setups/ld/mark_grid_refinement.F90,
setups/lss_read/init_from_scratch.F90,
setups/lss_read/mark_grid_refinement.F90,
setups/maclaurin/mark_grid_refinement.F90,
setups/poistest/init_from_scratch.F90,
setups/rt_mhd/mark_grid_refinement.F90,
setups/rt_new/mark_grid_refinement.F90,
setups/rt_new2/init_from_scratch.F90,
setups/rt_new2/mark_grid_refinement.F90,
setups/rt_new_pm3/mark_grid_refinement.F90,
setups/shock2cyl_3d/mark_grid_refinement.F90,
setups/shockcyl_3d/mark_grid_refinement.F90,
setups/t1a_convect/mark_grid_refinement.F90,
setups/vis_test/flash.F90, setups/wd_def/mark_grid_refinement.F90:
even more global pointer changes. it is amazing how many times we
use them even when we operate only on one block, sigh. well, not
so much in this batch
2003-09-30 12:50 kmriley
* source/mesh/amr/paramesh3.0/update_grid_refinement.F90: it should
be the same as paramesh2 right now
2003-09-30 12:49 kmriley
* source/: driver/time_dep/tstep_temperature_precompute.F90,
driver/x_refinement/tstep_temperature_precompute.F90,
gravity/poisson/GravAccelAllBlocks.F90,
gravity/poisson/GravAccelOneRow.F90,
gravity/poisson/GravPotentialAllBlocks.F90,
gravity/ptmass/GravAccelAllBlocks.F90,
hydro/explicit/tstep_hydro.F90,
hydro/explicit/split/ppm/diffuse/tstep_diffuse.F90,
hydro/explicit/split/ppm-rhd/tstep_hydro.F90,
hydro/hall_mhd/hall2d_init.F90, hydro/mhd/mhd_init.F90,
mesh/amr/update_grid_refinement.F90,
particles/mapping/MapParticlesToMesh.F90,
solvers/poisson/hypre_PFMG/poisson.F90,
solvers/poisson/pfm/pfm.F90: even more global pointer removals.
for meshy like routines that do things on a low levels, they now
use dBaseIncludes
2003-09-30 10:22 kmriley
* source/: hydro/explicit/euler_ms/ppm/hydro.F90,
particles/communication/ParticleMeshInfo.F90,
particles/mapping/MapParticlesToMesh.F90: conflict with new vars
blah blah
2003-09-30 10:21 kmriley
* source/driver/init_from_scratch.F90: more conflicts from the var
changes
2003-09-30 10:17 kmriley
* setups/wd_def/mark_grid_refinement.F90: another quick variable
fix and screwed up uses
2003-09-29 14:51 kmriley
* setups/cloop_mhd/zcurrent.F90, setups/dust_coll/init_block.F90,
setups/dust_coll_mm/init_block.F90,
setups/dust_coll_mm_cart/init_block.F90,
setups/eos_test/init_from_scratch.F90,
setups/evrard/init_block.F90, setups/evrard/ref_marking.F90,
setups/isentropic_vortex/init_from_scratch.F90,
setups/jeans/ref_marking.F90, setups/rosetta/zcurrent.F90,
setups/rt_new2/update_grid_refinement.F90,
setups/scaling_test/init_from_scratch.F90,
setups/sn_popiii/init_block.F90,
setups/wd_crushturbulence/init_from_scratch.F90,
source/driver/time_dep/tstep_temperature_precompute.F90: one set of
routinew with global pointers removed, and releases added in. if i
run behond on commits today, the test suite won't run right tonight
2003-09-26 17:27 tomek
* source/sites/: Aliases, monsun/Makefile.h: Update Makefile for
Sun systems. Modify Aliases to include Cray SV1 system.
2003-09-26 16:14 sheeler
* source/util/tools/PAPI/perfmon.F90: merging papi perfmon with
regular perfmon
2003-09-26 15:11 tomek
* source/mesh/amr/batchsend.F90: Fixing another Sun-related problem
with zerosized arrays being actual arguments. This allows running
in debug mode with array bounds checking on suns.
2003-09-26 13:04 tomek
* source/database/amr/dBaseProperties.F90: Added matching string
termination character - otherwise an extra character is left at the
end of the source file after preprocessing.
2003-09-25 11:36 siegela
* source/mesh/amr/batchsend.F90: changed occasionally zero-length
dynamic arrays rival/sival to length 1 to cure problem on Sun.
2003-09-19 02:06 sheeler
* setups/poistest/init_from_scratch.F90: updated to work with npg.
2003-09-18 21:31 caceres
* tools/scripts/FlashStack.py: bug in flash_stack-overflow code
2003-09-18 18:51 sheeler
* setups/poistest/init_from_scratch.F90: don't solve for
gravitational potental in initialization, only after.
2003-09-18 14:55 kmriley
* source/mesh/amr/paramesh3.0/: Makefile,
init_flash_physicaldata.F90: adding in the dummy
init_paramesh_arrays to Makefile and adding the initialization of
nxlo, etc in pm3
2003-09-18 14:54 kmriley
* tools/scripts/coding_standards/acc: new standards based on new
public vars
2003-09-18 14:54 kmriley
* source/database/: dBaseConstants.h, dBaseErrors.F90,
amr/paramesh2.0/dBase.F90, amr/paramesh3.0/dBase.F90,
ug/uniformGridII/dBaseDeclarations.F90: and still more. these are
changes in how the dBase figures out the il_bnd etc stuff and how
it makes it public. the pm3 stuff still assume PGs
2003-09-18 14:49 kmriley
* source/gravity/poisson/fft/poisson.F90,
source/hydro/explicit/euler_ms/ppm/PPMData.F90,
source/hydro/explicit/split/ppm/PPMData.F90,
source/io/amr/chombo/checkpoint.F90,
source/io/amr/chombo/plotfile.F90,
source/io/amr/hdf4/checkpoint.F90, source/io/amr/hdf4/plotfile.F90,
setups/cellular/init_block.F90,
source/io/amr/hdf5_serial/checkpoint.F90,
setups/globclust/bl93/PPMData.F90, setups/helix/ref_marking.F90,
setups/hypre_test/flash.F90, setups/nova/mixing_subgrid.F90,
setups/orbit/ref_marking.F90, setups/vis_test/flash.F90,
setups/wd_convect/checkpoint.F90, setups/wd_def/wr_integrals.F90:
clean up routines for the il_bnd changes. some that should have
been found by the coding standards script were missed
2003-09-18 14:39 kmriley
* source/: source_terms/cool/sutherland_dopita/cool.F90,
source_terms/cool/sutherland_dopita/cool_block.F90,
source_terms/heat/stat+gauss/heat.F90,
source_terms/heat/stat+gauss/heat_block.F90,
source_terms/ioniz/ioniz.F90, source_terms/ioniz/ioniz_block.F90,
source_terms/stirring/calc_accel.F90,
source_terms/stirring/stir.F90,
util/front_tracking/AdvanceTrackerADR.F90,
util/front_tracking/AdvanceTrackerDR.F90,
util/front_tracking/AdvanceTrackerDRcyl.F90,
util/front_tracking/AdvanceTrackerDRsph.F90,
util/front_tracking/FlameSpeedBlock.F90,
util/front_tracking/FlameSpeedBlockCyl.F90,
util/front_tracking/FlameSpeedBlockSph.F90: Changes il_bnd, etc to
iLo_gc
2003-09-18 14:36 kmriley
* setups/1cyl/init_block.F90, setups/1cyl/mark_grid_refinement.F90,
setups/2cyl/init_block.F90, setups/2cyl/mark_grid_refinement.F90,
setups/3lay/init_block.F90, setups/briowu/init_block.F90,
setups/burntest/init_block.F90, setups/cloop_mhd/mhd_sweep.F90,
setups/cloop_mhd/user_bnd.F90, setups/diffusetest/hydro_1d.F90,
setups/diffusetest/init_block.F90,
setups/dust_coll_mm_cart/mark_grid_refinement.F90,
setups/eos_test/hydro_sweep.F90, setups/evrard/ref_marking.F90,
setups/fft_test/init_block.F90, setups/flame_lbl/user_bnd.F90,
setups/flame_map/init_block.F90, setups/flame_map/user_bnd.F90,
setups/flame_shear/init_block.F90, setups/flame_shear/user_bnd.F90,
setups/flame_shear/user_var.F90, setups/flame_xrb/user_bnd.F90,
setups/flamecurvature/user_bnd.F90,
setups/flamegrav/init_block.F90, setups/flamegrav/user_bnd.F90,
setups/front_tracking_test1/init_block.F90,
setups/front_tracking_test1/user_bnd.F90,
setups/front_tracking_test2/init_block.F90,
setups/gas_curtain/init_block.F90, setups/gas_curtain/user_bnd.F90,
setups/globclust/bl93/hydro_1d.F90,
setups/globclust/cool_block.F90, setups/globclust/heat.F90,
setups/globclust/heat_block.F90,
setups/globclust/bl93/update_soln.F90,
setups/globclust/radloss/cool_block.F90,
setups/gwave/init_block.F90, setups/gwave_mhd/init_block.F90,
setups/gwave_mhd/user_bnd.F90, setups/hot_bubble/init_block.F90,
setups/hot_bubble/user_bnd.F90,
setups/hot_bubble_isot/init_block.F90,
setups/hot_bubble_isot/user_bnd.F90,
setups/hse_isothermal_atm/init_block.F90,
setups/hse_isothermal_atm/user_bnd.F90,
setups/hse_isothermal_fuel+ash/init_block.F90,
setups/hse_isothermal_fuel+ash/user_bnd.F90,
setups/hypre_test/init_block.F90,
setups/isentropic_vortex/init_block.F90,
setups/jeans/init_block.F90, setups/jeans/ref_marking.F90,
setups/kh_mhd/init_block.F90, setups/kppburntest/init_block.F90,
setups/kppburntest/user_bnd.F90, setups/ld/init_block.F90,
setups/ld/user_bnd.F90, setups/lss_read/init_block.F90,
setups/lss_read/init_from_scratch.F90, setups/mach/init_block.F90,
setups/mag_bubble/init_block.F90, setups/mag_bubble/user_bnd.F90,
setups/neitest/update_soln.F90, setups/nova/init_block.F90,
setups/pancake/init_block.F90, setups/poistest/init_block.F90,
setups/pp-hse/init_block.F90, setups/relsod/eos3d.F90,
setups/riemann_2d/init_block.F90, setups/rosetta/mhd_sweep.F90,
setups/rosetta/user_bnd.F90, setups/rt/user_bnd.F90,
setups/rt_mhd/init_block.F90, setups/rt_mhd/user_bnd.F90,
setups/rt_new/diagnost_rt.F90, setups/rt_new/init_block.F90,
setups/rt_new/user_bnd.F90, setups/rt_new2/diagnost_rt.F90,
setups/rt_new2/init_block.F90,
setups/rt_new2/init_from_scratch.F90, setups/rt_new2/user_bnd.F90,
setups/rt_new_pm3/diagnost_rt.F90,
setups/rt_new_pm3/init_block.F90, setups/rt_new_pm3/user_bnd.F90,
setups/sample_map/init_block.F90,
setups/shock2cyl_3d/init_block.F90,
setups/shock2cyl_3d/mark_grid_refinement.F90,
setups/shockcyl_3d/init_block.F90,
setups/shockcyl_3d/mark_grid_refinement.F90,
setups/shu_osher/user_bnd.F90, setups/soundwave/init_block.F90,
setups/stirturb/init_block.F90, setups/t1a_convect/hydro_sweep.F90,
setups/t1a_convect/init_block.F90, setups/twogamma/init_block.F90,
setups/twogamma/user_bnd.F90, setups/type1a/init_block.F90,
setups/vis_test/init_block.F90, setups/wd_convect/eos3d.F90,
setups/wd_convect/hydro_sweep.F90,
setups/wd_convect/init_block.F90,
setups/wd_crushturbulence/init_block.F90,
setups/wd_crushturbulence/user_bnd.F90,
setups/wd_def/init_block.F90,
setups/wd_def/mark_grid_refinement.F90, setups/wd_def/user_bnd.F90,
setups/wdc/init_block.F90, setups/windtunnel/user_bnd.F90,
setups/xrb_hse_test/init_block.F90,
setups/xrb_hse_test/user_bnd.F90, setups/xrb_spread/init_block.F90,
setups/xrb_spread/user_bnd.F90,
source/driver/convert_var_cons_to_prim.F90,
source/driver/convert_var_prim_to_cons.F90,
source/driver/init_from_checkpoint.F90,
source/driver/rhd/convert_var_cons_to_prim.F90,
source/driver/rhd/convert_var_prim_to_cons.F90,
source/driver/x_refinement/eos_guards.F90,
source/hydro/explicit/shock_detect.F90,
source/hydro/explicit/euler_ms/ppm/diffuse.F90,
source/hydro/explicit/euler_ms/ppm/force.F90,
source/hydro/explicit/euler_ms/ppm/geom.F90,
source/hydro/explicit/euler_ms/ppm/hydro.F90,
source/hydro/explicit/euler_ms/ppm/hydro_1d.F90,
source/hydro/explicit/euler_ms/ppm/update_soln.F90,
source/hydro/explicit/split/diffuse.F90,
source/hydro/explicit/split/force.F90,
source/hydro/explicit/split/geom.F90,
source/hydro/explicit/split/hydro_sweep.F90,
source/hydro/explicit/split/update_soln.F90,
source/hydro/explicit/split/ppm-rhd/hydro_1d.F90,
source/hydro/explicit/split/ppm-rhd/update_soln.F90,
source/hydro/explicit/split/ppm/diffuse/diffuse.F90,
source/hydro/explicit/split/ppm/diffuse/species_explicit.F90,
source/hydro/explicit/split/ppm/diffuse/therm_explicit.F90,
source/hydro/explicit/split/ppm/diffuse/visc_explicit.F90,
source/hydro/explicit/split/ppm/hydro_1d.F90,
source/hydro/mhd/mhd_sweep.F90, source/materials/eos/eos3d.F90,
source/materials/eos/helmholtz/eos3d.F90,
source/materials/eos3d.F90, source/materials/eos/null/eos3d.F90,
source/mesh/amr/paramesh2.0/amr_restrict_unk_fun.F90,
source/mesh/amr/paramesh2.0/amr_restrict_work_fun.F90,
source/mesh/amr/paramesh2.0/user_bnd.F90,
source/mesh/amr/paramesh2.0/insertion/amr_prolong_gen_unk_fun.F90,
source/mesh/amr/paramesh2.0/insertion/amr_prolong_gen_work_fun.F90,
source/mesh/amr/paramesh2.0/quadratic_cylindrical/amr_prolong_gen_u
nk_fun.F90,
source/mesh/amr/paramesh2.0/quadratic_cylindrical/amr_prolong_gen_w
ork_fun.F90,
source/mesh/amr/paramesh2.0/quadratic_spherical/amr_prolong_gen_unk
_fun.F90,
source/mesh/amr/paramesh2.0/quadratic_spherical/amr_prolong_gen_wor
k_fun.F90, source/mesh/amr/paramesh3.0/ref_marking.F90,
source/mesh/amr/paramesh3.0/user_bnd.F90, source/mesh/grid.F90,
source/mesh/amr/paramesh3.x/user_bnd.F90,
source/mesh/ug/user_bnd.F90,
source/mesh/ug/uniformGridII/user_bnd.F90,
source/particles/communication/ParticleMeshInfo.F90,
source/particles/mapping/MapParticlesToMesh.F90,
source/radiation/radiation_diffusion/amr_diffusion.F90,
source/radiation/radiation_diffusion/radiationModule.F90,
source/solvers/helmholtz/multigrid/helmholtz_mg_residual.F90,
source/solvers/poisson/hypre_PFMG/poisson.F90,
source/solvers/poisson/multigrid/poisson_mg_residual.F90,
source/solvers/poisson/multigrid_old/poisson_mg_residual.F90,
source/source_terms/burn_nse/burn_block.F90,
source/source_terms/cool/isothermal/cool.F90,
source/source_terms/cool/radloss/cool.F90,
source/source_terms/cool/radloss/cool_block.F90: Changes il_bnd,
etc to iLo_gc
2003-09-18 14:26 kmriley
* source/mesh/amr/paramesh3.0/flash_physicaldata.F90: added nvar2
for fill compatability wit flash unk2, etc
2003-09-18 14:25 kmriley
* source/database/amr/: dBaseProperties.F90,
paramesh2.0/dBaseProperties.F90, paramesh3.0/dBaseProperties.F90:
moving dBaseProperties to a common place for the two parameshes
2003-09-18 14:25 kmriley
* source/database/amr/: dBaseDeclarations.F90,
paramesh2.0/dBaseDeclarations.F90,
paramesh3.0/dBaseDeclarations.F90: moving dBaseDeclarations to a
common place for the two parameshes
2003-09-18 14:24 kmriley
* source/mesh/amr/paramesh3.0/amr_1blk_bcset.F: no tot_bnd_work
right now
2003-09-18 14:23 kmriley
* source/mesh/amr/: Makefile, init_paramesh_arrays.F90: empty place
holder for pm3 compatability
2003-09-18 14:23 kmriley
* source/: driver/init_from_scratch.F90,
mesh/amr/paramesh3.0/init_from_scratch.F90: a general one now lives
in source driver where it has lived for a long time
2003-09-16 21:23 caceres
* setups/rt_new2/evolve.F90: updated to new source_terms interface
2003-09-16 20:46 caceres
* setups/rt_new2/update_grid_refinement.F90: [no log message]
2003-09-16 20:29 tomek
* source/sites/cube.asci.uchicago.edu/Makefile.h-64: 64-bit
Makefile version for cube.
2003-09-16 19:13 caceres
* source/: materials/Makefile, materials/multifluid.int,
sites/cube.asci.uchicago.edu/Makefile.h,
visualization/native/visualization.c: changes to get vis working
with stuff in fluid database
2003-09-16 18:33 weirs
* source/driver/time_advancement/state_form/Config: Fixed typo.
2003-09-16 17:29 jbgallag
* source/driver/physical_constants.F90: rooling back to 20030910
version of physical_constants.F90
2003-09-16 17:23 jbgallag
* source/util/tools/logfile_bridge.F90: rolling back to old
logfile_bridge.F90 from 20030910 (done by checking out cvs co -D
20030911) what's the deal with being off by a day?
2003-09-16 17:22 jbgallag
* source/util/tools/logfile.F90: rolling back to old logfile.F90
2003-09-16 14:40 weirs
* source/driver/time_advancement/state_form/Config: Add BIC method.
2003-09-16 14:22 weirs
* source/hydro/explicit/euler_ms/fct/hydro.F90: Add flexibility
required for BIC implicit time advancement. An optional argument
specifies solving only mass and momentum, only energy, or all three
convection terms.
2003-09-16 14:22 ricker
* setups/maclaurin/evolve.F90, setups/rad_test/evolve.F90,
setups/rt_new/evolve.F90, setups/rt_new2/evolve.F90,
setups/rt_new_pm3/evolve.F90, setups/t1a_convect/evolve.F90,
source/driver/time_dep/evolve.F90,
source/source_terms/burn/burnModule.F90: Corrected a bug in
particle evolution: the forward Euler and leapfrog time
integrators all expect the gravitational potential to be updated
_after_ the particle positions have been. However, for some reason
we have been calling GravPotentialAllBlocks _before_ calling
AdvanceParticles.
Also added site info for sipapu.astro.uiuc.edu.
2003-09-16 14:19 weirs
* source/hydro/explicit/euler_ms/fct/Config: Relax dependence on
time_advancement/state_form
2003-09-16 14:17 weirs
* source/hydro/explicit/Makefile: Added dependence on
runtime_parameters to shock_detect.
2003-09-16 13:47 weirs
* source/driver/time_advancement/delta_form/Config: Correct module
restrictions.
2003-09-16 13:46 weirs
* setups/advect/Config: Allow building in new branch.
2003-09-16 12:41 tomek
* source/util/front_tracking/: AdvanceTrackerDR.F90,
AdvanceTrackerDRcyl.F90, AdvanceTrackerDRsph.F90: Cosmetic changes.
2003-09-16 10:00 freis
* source/: driver/physical_constants.F90, util/tools/logfile.F90,
util/tools/logfile_bridge.F90: fix for the pgf compiler error in
logfile_bridge; the character array passed to other modules needed
to be allocated explicitly
2003-09-16 01:45 tomek
* source/hydro/explicit/split/ppm/rieman.F90: After lumping all
species together in hydro_1d we no longer need to treat vscalars
separately in rieman.
2003-09-14 17:39 tomek
* source/mesh/amr/paramesh2.0/:
quadratic_cylindrical/amr_prolong_gen_unk_fun.F90,
quadratic_spherical/amr_prolong_gen_unk_fun.F90: Despite
monotonization, occasionally interpolation may yield negative
values for abundances. This usually happens inside unresolved
strong density gradients. In this case the fine data is set to
coarse data. The value triggering this mechanism is xnuc_neg
(negative small epsilon).
2003-09-14 14:52 tomek
* source/io/output.F90: Extend steer-by-file execution mode. In
addtion to .dump_restart, three more options are available: (1) if
.dump_checkpoint exists the code will write to checkpoint file
#9999 and continue execution; (2) similarly .dump_plotfile casues
the code to creat plot file #9999; (3) presence of .kill file will
force the code to abort with no additional I/O.
2003-09-14 08:00 freis
* source/util/tools/logfile.F90: sin of omission, commented out
deallocation call to correspond tp previous allocation
2003-09-14 07:48 freis
* source/util/tools/: logfile.F90, logfile_bridge.F90: temporarily
turned off performance summary in logfile until I've straightened
out the interface to logfile_brideg
2003-09-13 22:56 tomek
* source/driver/init_from_scratch.F90: Move potential calculation
inside the refining loop; add extra call to provide ghost cell data
for potential solver. The initial potential should now be fully
available.
2003-09-13 11:53 sheeler
* source/io/amr/hdf5_serial/h5_write_single.c: left a debugging
print statement in there last time.
2003-09-13 10:55 freis
* source/util/tools/logfile_bridge.F90: fixed return value in
allocated_string_array()
2003-09-13 01:19 tomek
* setups/wd_def/mark_grid_refinement.F90: Missing a bracket in 3-D
section.
2003-09-12 23:57 tomek
* setups/wd_def/mark_grid_refinement.F90: Avoid divZero in regions
void of progress variable.
2003-09-12 19:32 sheeler
* source/io/amr/hdf5_serial/: checkpoint.F90, h5_write.c,
h5_write_single.c, plotfile.F90: reintroducing processor number to
output. maybe not done efficiently. maybe not done correctly.
probably innocuous at worst.
2003-09-12 16:04 tomek
* setups/wd_def/mark_grid_refinement.F90: Fixed copy-and-paste
problem in 3-D.
2003-09-12 14:47 tomek
* source/hydro/explicit/split/ppm/: Config, PPMData.F90,
PPMInit.F90, hydro_1d.F90, riemann_hlle.F90: Provide support for
use_cma_advection and use_cma_steepening, the two missing pieces
from the CMA algorithm (steepening remains to be implemented). Add
dp_sh, 1-D pressure jump for shock detection - should make epsiln
obsolete. Allow for more consistent advection of volume scalars:
most of the loops differentiating between ionmax and qn are merged
now as in original "qn only" version. Also, there is no need for
abundances to appear in riemann_hlle.
2003-09-12 14:26 tomek
* source/hydro/explicit/split/update_soln.F90: Add support for
use_cma_advection: total mass density is calculated as a sum of
partial mass densities which now become primary variables.
2003-09-12 13:42 tomek
* source/hydro/explicit/: Config, shock_detect.F90: Introduce
multi-d shock detection pressure jump, dp_sh_md, as runtime
parametere; remove confusing comment about the role of smallu (it
is used only to prevent divZero - the shock detection is not
sensitive to flow velocity).
2003-09-12 13:29 tomek
* setups/wd_def/mark_grid_refinement.F90: Modified refinement
criteria: user progress variable instead of magnesium, use density
and velocity jumps constrained to the regions where progress
variable is abundant.
2003-09-12 09:46 freis
* source/util/tools/: logfile.F90, logfile_bridge.F90: change
interface to multifluid database in logfile_bridge for future
compatibilty
2003-09-12 07:28 freis
* source/util/tools/: logfile.F90, logfile_bridge.F90: changed
logfile_bridge interface of context parameters, measurement units,
and physical constants for future compatibility
2003-09-11 17:49 sheeler
* source/mesh/solvers/multigrid/Config: 8 post sweeps works best in
most cases
2003-09-11 00:41 sheeler
* setups/hypre_test/flash.par: domain now set to a sqaure from 0,1
2003-09-11 00:38 sheeler
* setups/hypre_test/init_block.F90.sin: a sinusoidal source
distribution.
2003-09-11 00:37 sheeler
* setups/hypre_test/init_block.F90.poistest: sets up the source
with the poistest distribution.
2003-09-11 00:14 sheeler
* source/solvers/poisson/hypre_PFMG/: hypre_wrapper.c, poisson.F90:
fixed an indexing problem. Added periodic bcs.
2003-09-10 21:47 sheeler
* tools/fidlr2/xplot_amr_diff.pro: now in double precision!
2003-09-10 16:27 tomek
* setups/wd_def/Config.1d_sph: Change composition from aprox13 to
C-O-Mg.
2003-09-10 16:27 tomek
* setups/wd_def/Config: Generic 1D/2D/3D Config file REQUIRing one
of the three interpolation modules. This allows to run the test
suite for different geometries.
2003-09-10 12:59 calder
* source/solvers/poisson/multipole/: Config,
compute_mpole_moments.F90, find_center_of_mass.F90, init_mpole.F90,
mpole_common.F90: Added Mike Zingale's routines for octants to the
repository. The changes consist of the addition of an octant
parameter and adjustments of the weights of the moments and center
of mass.
2003-09-09 13:39 calder
* setups/wd_def/Config.3d_car: Added visualization module to the
list of required modules.
2003-09-09 13:36 weirs
* source/util/mappers/: Makefile, map003to008.F90, map003to010.F90,
map009to003.F90, mappers.F90: Add some mappers for BIC method.
2003-09-09 11:29 jbgallag
* source/io/amr/ncmpi/ncmpi_parallel_write.c: added dummy particle
data for non-zero particle variables when particles are not being
used in the simulation, needed for fidlr3 routines
2003-09-09 11:29 jbgallag
* source/io/amr/ncmpi/checkpoint.F90: added some stuff for particle
variables when particles aren't present, null data is provided,
this is needed for fidlr3 routines
2003-09-09 10:12 jbgallag
* source/io/amr/ncmpi/ncmpi_parallel_read.c: replaced old nc_ calls
to ncmpi_ calls
2003-09-09 10:11 jbgallag
* source/io/amr/ncmpi/ncmpi_parallel_read.c: updated to pntecdf.h
2003-09-09 10:10 jbgallag
* source/io/amr/ncmpi/ncmpi_file_interface.c: updated header file
name pnetcdf.h
2003-09-09 10:10 jbgallag
* source/io/amr/ncmpi/ncmpi_parallel_write_single.c: replaced old
nc_ functions to ncmpi_, changed header to pnetcdf.h
2003-09-09 10:09 jbgallag
* source/io/amr/ncmpi/ncmpi_parallel_write.c: replaced old nc_
functions with ncmpi_ functions, changed header to pnetcdf
2003-09-09 09:52 tomek
* source/hydro/explicit/split/ppm/Config: Change default for
vscalars_follow_density to TRUE - we should avoid a risk of keeping
erroneous behaviour as default. Added comment.
2003-09-09 01:51 sheeler
* tools/fidlr2/xplot_amr_diff.pro: updated comment
2003-09-09 01:48 sheeler
* tools/fidlr2/: diff.pro, read_amr_hdf5.pro, xplot_amr_diff.pro:
preliminary attempt to visually diff checkpoint files. only works
for 2d. no gui interface.
2003-09-08 20:19 tomek
* source/hydro/explicit/split/ppm/PPMInit.F90: Need to initialize
and pass vscalars_follow_density.
2003-09-08 18:58 tomek
* source/hydro/explicit/split/ppm/: Config, PPMData.F90,
hydro_1d.F90, rieman.F90: Remove inconsistency arising between
scalar volumes and density field when advected quantity for volume
scalar is a product of a scalar and density. This resolves a
problem of patchiness observed during late evolutionary stages of
Type Ia deflagration models. Introduce vscalars_follow_density
logical flag; set to .true. to make advection of vscalars
consistent with density.
2003-09-08 13:03 dubey
* docs/HOWTO/ASCI-QSC-HOWTO: updating the qsc howto
2003-09-03 23:29 tomek
* source/source_terms/burn_nse/burn_block.F90: Make string
expression syntax compatible with the Intel compiler.
2003-09-03 11:36 nata
* setups/wd_def/Config, setups/wd_def/Config.1d_sph,
setups/wd_def/Config.2d_cyl, setups/wd_def/Config.3d_car,
setups/wd_def/flash.par, setups/wd_def/init_block.F90,
source/source_terms/burn_nse/burn_block.F90,
source/util/front_tracking/Config: Added output of flame speed and
reaction progress variable, if ft_debug=true.
2003-09-03 09:59 nata
* source/util/front_tracking/: AdvanceTrackerDR.F90,
AdvanceTrackerDRcyl.F90, AdvanceTrackerDRsph.F90:
Extended Tomek's change (limit phidot to be greater than zero) for
all geometries.
2003-09-02 17:13 caceres
* source/visualization/native/: Config, genConfig.py,
visualization.c: added vis_divide_by_dens_n option
2003-09-02 16:42 tomek
* source/util/front_tracking/AdvanceTrackerDRcyl.F90: Add limiting
for phi and phidot in the flame advance module. Similar
modifications should be added across geometries.
2003-09-02 11:07 nata
* source/source_terms/burn_nse/: Config, burn_block.F90: The third
way to compute unburned density and Atwood number is added. It
gives even smoother flame speed that approx_atwood, and also more
acurate. The feature is off by defauld. To invoke it use
"approx_atwood = false" and "new_approx_atwood = true" combination.
2003-09-02 10:14 nata
* source/util/front_tracking/: FlameSpeedBlock.F90,
FlameSpeedBlockCyl.F90, FlameSpeedBlockSph.F90: Bug fix: use of
non-initialized variable "f".
2003-09-01 15:22 calder
* setups/wd_def/: Config, Config.1d_sph, Config.2d_cyl,
Config.3d_car: Updated Config files. Now there are versions for 1-d
spherical, 2-d cylindrical, and 3-d Cartesian coordinates. The
default file, Config, is identical to Config.1d_sph.
2003-08-31 16:44 tomek
* source/materials/eos/helmholtz/helmeos.F90: Corrected diagnostics
in case when pressure gets negative. Coulomb correction will not
blamed for that by default unless it really causes us a trouble.
2003-08-29 14:52 jbgallag
* source/mesh/amr/paramesh2.0/amr_redist_blk.F90: added maxblocks
as var to get from physicaldata
2003-08-29 13:51 siegela
* source/mesh/amr/paramesh2.0/amr_redist_blk.F90: added maxblocks
exceeded check. This should stop deadlock in cases where maxblocks
is exceeded.
2003-08-29 10:15 calder
* setups/wd_def/flash.par: Updated flash.par for the parameters of
the whole-star run.
2003-08-28 20:06 tomek
* source/util/front_tracking/DistanceToFront.F90: One cannot
declare subroutines external: converting calls to front_* to
functions.
2003-08-28 20:04 tomek
* setups/wd_def/wr_integrals.F90: Add support to calculate binding
energies and corresponding masses.
2003-08-28 17:33 caceres
* source/visualization/native/visualization.c: cleaned up some
comments
2003-08-28 17:26 caceres
* source/visualization/native/visualization.c: log->log10
2003-08-28 16:32 calder
* setups/wd_def/init_block.F90: Added capability to do off center
ignition.
2003-08-28 16:19 zingale
* source/io/amr/hdf5_serial/checkpoint.F90: remove a barrier --
this causes the code to hang on several machines when running with
more than one processor and using particles.
2003-08-28 12:26 siegela
* source/source_terms/burn_nse/burn_block.F90: removed
double-declaration of variable f
2003-08-28 11:51 kmriley
* source/hydro/explicit/split/ppm/detect.F90: removed double
declarations that i think tomek was referring to in email. i am
leaving the parameter declarations, since, otherwise, the variables
are used before they are set
2003-08-27 21:28 tomek
* source/hydro/explicit/euler_ms/ppm/detect.F90: Unintentionally
left constants declared twice - causes compilation fail on
lahey_gin...
2003-08-27 19:58 caceres
* source/visualization/native/visualization.c: added logscale to
makeNice
2003-08-27 19:54 zingale
* source/io/amr/hdf5_serial/h5_write.c: add compression for the
particles
2003-08-27 19:15 caceres
* source/visualization/native/visualization.c: fixed logscale bug
2003-08-27 18:41 caceres
* source/visualization/native/: Config, genConfig.py,
visualization.c: logscale keyword. Doesn't work yet (on lahey at
least) for some weird reason, commiting to test on other machines
withou hasles
2003-08-27 17:07 dubey
* source/sites/qsc.lanl.gov/Makefile.h: resolving module confilcts
2003-08-27 16:19 calder
* setups/wd_def/mark_grid_refinement.F90: Added a customized
version to refine on just Mg24.
2003-08-27 15:01 tomek
* source/hydro/explicit/euler_ms/ppm/hydro_1d.F90: Sync'ed with
regular PPM solver: add starting loop index for avisco. avisco runs
now from nzni to nznf, arbitrary dummy arguments.
2003-08-27 14:58 tomek
* source/hydro/explicit/split/ppm/hydro_1d.F90: Dealing with
5/nzn5: add starting loop index for avisco. avisco runs now from
nzni to nznf, arbitrary dummy arguments.
2003-08-27 14:54 tomek
* source/hydro/explicit/euler_ms/ppm/avisco.F90: Sync'ed with
regular PPM solver: added safeguards to prevent divZero (as
reported by Andrew MacFadyen). Modifications apply to 1D and 2D
cylindrical coordinates.
2003-08-27 14:49 tomek
* source/hydro/explicit/split/ppm/avisco.F90: Add safeguards
against divZero reported by Andrew MacFadyen. This includes all 1D
and 2D cylindrical coordinates. 3D case remains to be added.
2003-08-27 14:42 kmriley
* setups/sedov_pm3/Config: picking out the old pm3.x crap
2003-08-27 14:20 tomek
* source/hydro/explicit/split/ppm/detect.F90: Simplify "common
factors" loop and final calculation of the interface values; fuse
loops and minimize index range.
2003-08-27 13:35 tomek
* source/hydro/explicit/split/ppm/flaten.F90: Symmetrization fix
(originally discussed by Markus Gross); simplify some expressions,
fuse loops, minimize do-loop index range.
2003-08-26 18:45 caceres
* source/visualization/native/visualization.c: horrible horrible
bug
2003-08-26 18:32 caceres
* source/visualization/native/visualization.c: tot_vel hack
2003-08-26 17:55 calder
* setups/wd_def/flash.par: Set dtmax to 2.0e-4. In some simulations
it can get bigger, which produces irregular visualization results.
2003-08-26 11:30 calder
* setups/wd_def/flash.par: The flash.par file as I ran it for the
big, whole star, test run.
2003-08-25 17:08 zingale
* source/util/initialization/: hse/init_1d.F90,
hse_monopole/init_1d.F90: get rid of references to the restart file
-- that is confusing
2003-08-25 13:42 ricker
* setups/pancake/mark_grid_refinement.F90: Fixed an FPE-producing
bug -- when computing delta for a block, don't let it be < 0, and
take alog10(1+delta), not alog10(delta), when computing the desired
refinement level.
2003-08-25 13:41 ricker
* docs/flash/users_guide/test_cases.tex: Fixed an error in the
velocity equation used in the pancake test description.
2003-08-25 13:10 calder
* setups/wd_def/init_block.F90: FIxed the setting of the fluff. Now
it will use the last point of the initial model as the fluff if
den_fluff .le. 0.0. Otherwise it uses the fluff values.
2003-08-24 23:12 tomek
* tools/fidlr2/xplot3d_amr_new.pro: For a time being keep fidlr2 in
sync with improvements being added to fidlr3.
2003-08-23 18:00 tomek
* source/hydro/explicit/split/update_soln.F90: Cleaned, several
constructs dating back to the PROMETHEUS era removed.
2003-08-23 17:57 tomek
* source/util/tools/Makefile: Add clean_last_bits.
2003-08-23 17:56 tomek
* source/util/tools/clean_last_bits.F90: Attempts to clean last
bits of a floating point number. This can be useful to adjust grid
interface locations, spacing, etc. Original version contributed by
Artur Gawryszczak, Copernicus Center, Warsaw.
2003-08-23 17:53 tomek
* source/mesh/amr/divide_domain.F90: Add support for removing
floating point bias from the mesh discretization (controlled by
unbiased_geometry switch). This option is not recommended for
general use but was found helpful in some cases.
2003-08-23 17:46 tomek
* source/mesh/Config: Support for unbiased_geomtry switch enabling
cleaning of floating point bias in mesh geomtry.
2003-08-23 17:45 tomek
* source/mesh/grid.F90: Optional cleaning of last bits to minimize
possible bias in mesh geometry is provided (controlled by
unbiased_geometry switch). This option is not recommended for
general use.
2003-08-23 14:15 ricker
* source/io/amr/hdf5_serial/h5_write.c: Fixed a serious bug in
h5_write_particles() that was preventing particle data from being
written out correctly in multi-processor runs. The strings that
describe the fields in the particle data type were not being copied
properly from the input Fortran arrays into the C string variable
that was being used to define the HDF5 particle data type. Somehow
this was either screwing up the datatype definition or overwriting
some of the particle data with zeroes; the symptom was that
processor 0's particle data would be written correctly, but that
subsequent processors' particle records would be filled with
zeroes. I've replaced the string copies with the same type of code
used in h5_initialize_file().
2003-08-23 14:03 ricker
* setups/sn_popiii/init_block.F90: Updates to Pop III supernova
setup to initialize internal energy variable.
2003-08-22 19:02 sheeler
* source/solvers/helmholtz/multigrid/Config: removed parameters
that should have been defined in the mesh/solvers equation
independant part of multigrid implementation.
2003-08-22 17:18 sheeler
* source/solvers/poisson/multigrid/Config: removing parameters from
this equation dependant part and adding them to the equation
independant part.
2003-08-22 17:17 sheeler
* source/mesh/solvers/multigrid/: Config, mg_cycle.F90: Moving
parameters from equation dependant part of mg algorithm:
solvers/poisson/multigrid/Config to equation independant part:
mesh/solvers/multigrid/Config.
Added capability for different number of pre and post smooths.
2003-08-22 16:31 sheeler
* source/solvers/poisson/multigrid/poisson_mg_relax.F90: this
eliminates one unnecessary guardcell fill at the end of the sweeps.
Should help performance. Also, if you want to set the smooth
number to zero for fun, it will work now.
2003-08-22 10:46 siegela
* source/source_terms/burn/burnModule.F90: reverted back to old eos
call since new one seems to have, for no discernable reason, broken
at least one or two setups.
2003-08-21 16:20 kim
* source/driver/convert_var_prim_to_cons.F90: removed variable
(smlrho) that wasn't being used.
2003-08-21 16:19 kim
* source/driver/convert_var_cons_to_prim.F90: made sure density was
conserved -- fixes abundances problem
2003-08-21 15:36 caceres
* setups/rt_new2/init_block.F90: removed unused variables
2003-08-21 12:36 caceres
* setups/rt_new2/diagnost_rt.F90: removed "second attempt" stuff,
didn't understand it. Increased precision of printouts in rt.dat
because initial timesteps were all coming out identical.
2003-08-21 12:32 caceres
* source/visualization/native/: Config, visualization.c: changed
the freq parameter to nfreq, introduced tfreq
2003-08-20 19:03 tomek
* source/hydro/explicit/split/ppm/interp.F90: coeff's are available
only up to nzn6.
2003-08-20 18:42 tomek
* source/hydro/explicit/split/ppm/hydro_1d.F90: Made sure we do not
access uninitialize parts of cvisc.
2003-08-20 18:33 tomek
* source/mesh/amr/paramesh2.0/amr_flux_conserve_udt.F90: Apparently
some values of block_point may not be initialized. This probably
happens when we run sequentially. Diagnostics is provided and the
code aborts when an attempt is made to access an unidentified
block. If anyone sees that happening, more serious debugging is
required.
2003-08-20 17:10 zingale
* source/io/amr/hdf5_serial/h5_write.c: close the runtime parameter
data types
2003-08-20 07:01 olson
* source/io/amr/chombo/plotfile.F90: SOme varaibles not 'saved'
that need to be. KMO
2003-08-19 18:26 sheeler
* source/source_terms/source_termsModule.F90: lahey debug objects
to a possibly undefined variable.
2003-08-19 17:06 zingale
* source/io/amr/hdf5_parallel/h5_parallel_write_single.c: close a
hanging group id
2003-08-19 17:01 zingale
* source/io/amr/hdf5_serial/h5_write_single.c: close a group object
that I neglected previously
2003-08-19 15:39 olson
* source/mesh/amr/paramesh3.0/headers/paramesh_preprocessor.fh:
FORCE_CONSISTENCY_AT_SRL_INTERFACES should NOT be defined. KMO
2003-08-19 13:20 kmriley
* source/mesh/ug/uniformGridII/Makefile: typo for
create/calculateBlockFromCoords
2003-08-19 00:22 tomek
* source/driver/time_dep/evolve.F90: Cosmetic changes.
2003-08-19 00:20 tomek
* setups/rt_new/evolve.F90: Bring evolve up-to-date: remove
potential initialization and modify call to source_terms to comply
with the new interface. This problem compiles now.
2003-08-19 00:07 tomek
* setups/rt_new/evolve.F90: Corrected call syntax to source_terms.
2003-08-19 00:04 tomek
* setups/pancake/init_block.F90: Fixed two syntax errors.
2003-08-18 23:26 calder
* setups/wd_def/user_bnd.F90: Quick fix.
2003-08-18 22:58 calder
* setups/wd_def/user_bnd.F90: Added the appropriate diode boundary
conditions for the -X, -Y, and -Z directions.
2003-08-18 18:22 weirs
* source/util/mappers/map001to003.F90: Correct computation of
gamma_e.
2003-08-18 18:07 tomek
* source/driver/time_dep/: delta_form/euler1/evolve.F90,
delta_form/rk3/evolve.F90, delta_form/strang_delta/evolve.F90,
delta_form/strang_state/evolve.F90, evolve.F90: Initial calculation
of the self-gravitating potential has been moved to
init_from_scratch to make it available for the very first output:
the first call to GravPotentialAllBlocks is not necessary here.
2003-08-18 18:05 tomek
* source/driver/init_from_scratch.F90: Move initial calculation of
the self-gravitating potential to init_from_scratch instead of
delaying calculation till right prior to time integration (usually
evolve). This makes potential available for the very first output.
2003-08-18 17:14 kmriley
* source/mesh/ug/uniformGridII/Makefile: new makefile
2003-08-18 17:12 kmriley
* source/mesh/ug/uniformGridII/unitTest/Makefile: new routine
incorporated
2003-08-18 16:54 kmriley
* source/mesh/ug/uniformGridII/: allocArrays.c,
calculateBlockFromCoords.c, calculateNeighborBlockNum.c,
calculateNumToLeft.c, createBlockNeighbors.c, createMpiTypes.c,
createTopology.c, guardcellFillRemote.c, initLocalBlocks.c,
initialize.c, routines.h: lots of changes in a lot of things...
and, well, mostly this is not relevant to anything else.. but, that
i think a bug bug is fixed. but, some pivotal changes were made in
calculating the grid/neightbors
2003-08-18 14:21 tomek
* source/solvers/poisson/multipole/spherical_block.F90: Add linear
interpolation for potential from the zone interface to zone
centers. (In essence, for higher accuracy, one could store
gravitational accelerations here and use a custom version of
GravAccel.) Also, modify logic to resolve confusion between the
first radial index of a block and of the global grid.
2003-08-18 14:15 tomek
* source/solvers/poisson/multipole/: mpole_common.F90,
init_mpole.F90: Add temporary storage for zone centered potential
in 2-D spherical geometry.
2003-08-18 13:21 freis
* source/util/tools/: Makefile, logfile.F90, logfile_bridge.F90:
moved performance summary call to logfile_bridge
2003-08-18 12:33 freis
* source/util/tools/: Makefile, logfile.F90: moved some calls of
other modules to logfile_bridge to make transition to future
logffile.c easier
2003-08-18 12:23 freis
* source/util/tools/logfile_bridge.F90: module to help transition
to future logfile in C; duplicates some functions that call other
momdules
2003-08-18 09:45 olson
* source/mesh/amr/paramesh3.0/init_paramesh_arrays.F90: Fixed Bug
where arrays where being accessed in amr_morton_process before they
were actually allocated or filled with valid data. KMO
2003-08-17 19:04 dubey
* source/solvers/poisson/multipole/compute_mpole_potential.F90: Bug
fixes
2003-08-17 16:45 calder
* setups/wd_def/init_block.F90: Took out initializing guard cells.
2003-08-17 16:33 calder
* setups/wd_def/Config: Switched to the C-O-Mg setup.
2003-08-16 14:30 tomek
* source/solvers/poisson/multipole/compute_mpole_potential.F90:
Documented, added credits, robodoc'ed.
2003-08-15 19:37 tomek
* setups/wd_convect/: Config, Config.1d_sph, Config.2d_cyl,
Config.2d_sph, burnModule.F90, checkpoint.F90, coldwd_mchandra.dat,
eos3d.F90, flash.par.2d_sph, hydro_1d.F90-LF, init_block.F90:
Bringing distribution in sync with local version. No major changes
but now we have 2-D spherical configuration available. Still in
testing... eos3d will need to be brought up to the eos3d_new
level; in the meantime we temporarily use old burnModule.
2003-08-15 19:22 jbgallag
* source/io/amr/ncmpi/plotfile.F90: fixed typos (centered data was
being named plt_crn)
2003-08-15 18:44 weirs
* source/sites/qsc.lanl.gov/Makefile.h: Updated to reflect
SourceForge modules package on qsc, which replaced some other
version of modules. The SF version requires some particular
environment variables to be passed as flags during compilation.
2003-08-15 16:36 nata
* source/util/front_tracking/rhjump.F90: Commented out some
debugging print statements.
2003-08-15 12:06 tomek
* source/solvers/poisson/multipole/spherical_block.F90: index range
fixed in integration of Legendre polynomials; fix fp constants;
initialize potential and introduce point mass; fake (interpolate)
potential near the center, still needs to interpolate from
interfaces to zone centers - delay those two till index checking
will be done by Anshu; more comments
2003-08-15 11:59 tomek
* source/solvers/poisson/multipole/mpole_common.F90: add suport for
new runtime parameters; make lstep integer
2003-08-15 11:58 tomek
* source/solvers/poisson/multipole/init_mpole.F90: added support
for new runtime parameters; passing required constants; diagnostics
for point-like mass potential softening; use more accurate
expression in calculation of interface positions for the global
grid
2003-08-15 11:53 tomek
* source/solvers/poisson/multipole/Config: added for point mass
(point_mass) and softening (point_mass_rsoft)
2003-08-15 11:52 tomek
* source/solvers/poisson/multipole/compute_mpole_potential.F90:
index range adjusted in calculation of the moment integrals (rmsin,
rmsout); comments added
2003-08-15 11:48 tomek
* source/solvers/poisson/multipole/compute_mpole_moments.F90:
cosmetic changes; comment added in case of 2-D spherical
2003-08-15 11:43 siegela
* source/source_terms/burn/burnModule.F90: changed eos call from
old eos3d to new eos3d as test.
2003-08-15 11:39 siegela
* source/materials/eos_types.F90: fixed bug -- changed max_newton
declarationo from real to integer.
2003-08-13 19:31 nata
* source/: source_terms/burn_nse/Config,
source_terms/burn_nse/Makefile,
source_terms/burn_nse/burn_block.F90,
util/front_tracking/FlameSpeedBlock.F90,
util/front_tracking/FlameSpeedBlockCyl.F90,
util/front_tracking/FlameSpeedBlockSph.F90,
util/front_tracking/Makefile:
Added another way to estimate Atwood number, needed for variable
flame speed. Instead of iterating EOS for unberned and berned
density, Atwood number is computed from gamma_e, pressure and
density. This approximation for small Atwood numbers can be enabled
with "approx_atwood = .true." Interface changes: laminar flame
speed and atwood are computed in burn_block.F90; the subroutine
FlameSpeedBlock overrides laminar speed with max(laminar, subgrid).
2003-08-13 14:53 linde
* source/hydro/mhd/mhd_sweep.F90: Added non-dimensialization of
time step
2003-08-13 01:21 jbgallag
* source/io/amr/hdf5_parallel/h5_parallel_write_single.c: changed
all string attributes from nullterm to nullpad to fix problems
reading varibale names in idl5.6 using fidlr3
2003-08-13 01:20 jbgallag
* source/io/amr/hdf5_parallel/h5_parallel_write.c: changed all
string attributes from nullterm to nullpad (caused problems reading
variable names in idl 5.6 (fidlr3))
2003-08-11 08:56 freis
* source/util/tools/perfmon.F90: re-did indentation in write
statements
2003-08-08 21:28 dubey
* lib/pfft/source/initialize.c: removing initialize.c
2003-08-08 21:28 dubey
* lib/pfft/source/init_pfft.c: change file from initialize.c to
init_pfft.c
2003-08-08 21:27 dubey
* lib/pfft/source/: disttran.c, wave.c: A few corrections
2003-08-08 21:26 dubey
* lib/pfft/include/: Pfft.h, Pfftf90.h, Pfftf90_nompi.h, pfft.h:
keeping up the header files
2003-08-08 16:20 dubey
* lib/pfft/source/: Makefile, Makefile.AIX, Makefile.IRIX64,
Makefile.LINUX, Makefile.LINUX_FFTW, fftw_dcft.c, fish_cos_sin.c,
futils.c, transform.c, utils.c, wave.c: Taking care of various
boundary conditions for Poisson solve
2003-08-08 14:51 kmriley
* source/mesh/amr/paramesh3.0/: tot_bnd.F90, tot_bnd.F90: there was
a typo. the tot_bnd at line 1463 had *+ rather than what it wanted,
a +.
2003-08-08 14:49 kmriley
* source/io/amr/hdf5_serial/checkpoint.F90: simtime was being sent
into checkpoint_re as an IN, but, then, it was sent as an arg to
checkpoint_filename_re and INOUT. particular compilers do not like
this conflict in intent. so, i made simtime be intent INOUT in
checkpoint_re.
2003-08-08 14:35 nata
* source/source_terms/burn_nse/burn_block.F90: "Narrow band" bug
fix (added on Aug.5).
2003-08-08 09:34 freis
* source/driver/abort_flash.F90: removed superfluous break_logfile
call
2003-08-07 19:02 jbgallag
* source/io/amr/ncmpi/: ncmpi_parallel_read.c,
ncmpi_file_interface.c: made status checks a compile time
definition (-DDEBUG_IO)
2003-08-07 19:01 jbgallag
* source/io/amr/ncmpi/ncmpi_parallel_write_single.c: added two
attributes, number of modules and number of unknown names, also
cleared up how modules and unknown names are written in the header.
Made status checks a compile-time definition (-DDEBUG_IO)
2003-08-07 19:00 jbgallag
* source/io/amr/ncmpi/ncmpi_parallel_write.c: added two attributes,
number modules number of unknown names and cleared up how both
these look in he header. Also added status checks as a compile-time
define (-DDEBUG_IO)
2003-08-07 18:58 jbgallag
* source/io/amr/ncmpi/plotfile.F90: added bcast of date_string so
headers on all processes won't conflict
2003-08-07 17:05 jbgallag
* source/io/amr/ncmpi/checkpoint.F90: took unecessary print
statement
2003-08-07 16:58 jbgallag
* source/io/amr/ncmpi/ncmpi_parallel_write.c: inlcuded
file_creation_time, which comes from processor 0
2003-08-07 16:58 jbgallag
* source/io/amr/ncmpi/checkpoint.F90: added a MPI_Bcast to send the
date_string value to all processors from processor 0, this is
necessary in order to work right with the pnetcdf library, this
value can change across processors on smp systems and clusters and
all header/attribute info in pnetcdf must be the same across all
processes
2003-08-07 12:21 freis
* source/util/tools/: perfmon.F90, PAPI/perfmon.F90: edited
documentation
2003-08-07 12:20 freis
* source/util/tools/logfile.F90: removed obsolete routines and
vars; added documentation
2003-08-06 17:43 siegela
* source/: materials/eos3d.F90, materials/eos/eos3d.F90,
materials/eos/helmholtz/eos3d.F90, materials/eos/null/eos3d.F90,
source_terms/burn/burnModule.F90: made some changes to inteface for
eos3d_new so it could accomodate both helmholtz and default. Put
commented out sample call to eos3d_new in burnModule.
2003-08-06 17:40 siegela
* source/materials/: Makefile, eos_types.F90: added new module to
define paramlist type in new eos3d interface.
2003-08-06 17:37 siegela
* setups/maclaurin/evolve.F90: removed uneccesary calls to
source_terms. should compile now.
2003-08-06 17:17 weirs
* source/hydro/explicit/euler_ms/kurganov/kurganov_module.F90:
Fixed bug in format of eos1d inputs (mass fractions).
2003-08-06 15:03 freis
* source/util/tools/logfile.F90: fixed string length for printing
runtime parameters to logfile
2003-08-06 14:50 freis
* source/materials/multifluid.F90: fixed array-out-of-bounds error
in list_mfluid_db
2003-08-06 13:57 freis
* source/util/tools/PAPI/Makefile: added logfile dependency to
perfmon target
2003-08-06 13:12 freis
* source/: materials/multifluid.F90, util/tools/logfile.F90:
changed \'enddo\' to \'end do\' in multifluids.F90; adjusted output
format for multifluids in logfile
2003-08-05 15:48 zingale
* tools/fidlr2/merge_polar.pro: simple merge routine for 2-d
spherical coordinates. Eventually I'll get around to checking in
the rest of the spherical routines
2003-08-05 14:05 freis
* source/util/tools/: perfmon.F90, PAPI/perfmon.F90: updated
perf_summary in /PAPI/perfmon.F90
2003-08-05 13:51 nata
* tools/fidlr2/merge_amr.pro: Minor bug fix: print x,y,z - range,
instead of x,y,y - range.
2003-08-05 12:43 nata
* source/: source_terms/burn_nse/burn_block.F90,
util/front_tracking/front_tracking.F90: Added a small epsilon for
reaction progress variable. This is supposed to restrict burning
between to "narrow band".
2003-08-05 11:34 freis
* source/materials/multifluid.F90: changed subroutine that lists
the db content in logfile; logfile now passes a multidimensional
array instead of a string buffer
2003-08-05 11:32 freis
* source/driver/: end_flash.F90, physical_constants.F90,
runtime_parameters.F90: changed logging procedure for physical
constants and runtime parameters dbs; listing the dbs is initiated
by the logfile module, which passes an allocatable multidimensional
array to the respective modules; end_flash.F90 now calls the
logfile module to initiate the perfmance summary
2003-08-05 11:29 freis
* source/util/tools/: Makefile, logfile.F90, perfmon.F90: changed
logfile so that it passes allocatable string arrays to the
respective modules for collect physical constants, measurements,
multifluid db, and performance summary
2003-08-05 08:53 olson
* source/solvers/poisson/multigrid/poisson_mg_residual.F90: Removed
unused dBase module to make compatable with PM3.0. KMO
2003-08-05 08:52 olson
* source/mesh/: amr/paramesh3.0/Makefile,
amr/paramesh3.0/get_tree_nodetypes.F90,
solvers/multigrid_pm3.0/Makefile,
solvers/multigrid_pm3.0/mg_bndry.F90,
solvers/multigrid_pm3.0/mg_common.F90,
solvers/multigrid_pm3.0/mg_copy.F90,
solvers/multigrid_pm3.0/mg_correct.F90,
solvers/multigrid_pm3.0/mg_cycle.F90,
solvers/multigrid_pm3.0/mg_guardcell.F90,
solvers/multigrid_pm3.0/mg_init.F90,
solvers/multigrid_pm3.0/mg_init_src.F90,
solvers/multigrid_pm3.0/mg_norm.F90,
solvers/multigrid_pm3.0/mg_precond.F90,
solvers/multigrid_pm3.0/mg_prolong.F90,
solvers/multigrid_pm3.0/mg_restore_nodetypes.F90,
solvers/multigrid_pm3.0/mg_restrict.F90,
solvers/multigrid_pm3.0/mg_set_ext_bndry.F90,
solvers/multigrid_pm3.0/mg_write.F90,
solvers/multigrid_pm3.0/mg_zero.F90,
solvers/multigrid_pm3.0/multigrid.F90: Added new file for
paramesh3.0 - paramesh2.0 compatibility with multigrid. KMO
2003-08-05 08:38 freis
* bin/setup.py: temporarily added a constant format string
(REAL_FORMAT) for reals
2003-08-01 11:45 freis
* source/driver/init_flash.F90: moved create_logfile so that it is
called after constants and materials are initiated; this caused an
error message in the logfile instead of a db listing
2003-07-31 17:32 siegela
* source/materials/eos/helmholtz/vector_eos.F90: added scoping line
to make at least dbase used variables private. probably want to be
completely explicit in the future.
2003-07-31 14:58 siegela
* source/materials/eos/helmholtz/: vector_eos.F90, vector_eos.fh:
replaced vector_eos.fh with module vector_eos.F90
2003-07-31 14:57 siegela
* setups/wd_convect/eos3d.F90,
source/materials/eos/helmholtz/Makefile,
source/materials/eos/helmholtz/eos.F90,
source/materials/eos/helmholtz/eos1d.F90,
source/materials/eos/helmholtz/eos3d.F90,
source/materials/eos/helmholtz/helmeos.F90,
source/materials/eos/helmholtz/init_eos.F90: changed #include
"vector_eos.fh" to use vector_eos
2003-07-31 13:59 siegela
* source/driver/time_dep/delta_form/: strang_delta/evolve.F90,
strang_state/evolve.F90: commented out source_terms calls until
they can be changed to match new source_terms interface.
2003-07-31 10:21 siegela
* setups/burntest/: burnModule.F90, burn_block.F90: made consistent
with new burners. should fix test suite problems.
2003-07-31 09:25 olson
* source/mesh/amr/paramesh3.0/: mark_grid_refinement.F90,
update_grid_refinement.F90: Added some explanitory comments. KMO
2003-07-31 07:31 olson
* source/mesh/amr/paramesh3.0/amr_1blk_bcset.F: Changed so that
tot_bnd_work is called. Enables boundry conditions to be set for
the 'work' array. KMO
2003-07-30 17:09 siegela
* source/materials/eos/eos3d.F90: added a second function eos3d_new
to the module. Ultimately, eos3d_new should replace eos3d, but for
compatibality both will exist for now. Advantage of eos3d_new is
that 1. it is totally encapsulated and self-testable 2. it doesn't
assume mapper or no-mapper drivers.
2003-07-30 17:04 caceres
* tools/scripts/text_formatting/cleantabs.py: cleans tabs in
leading whitespace of a line
2003-07-30 13:50 olson
* source/driver/init_flash.F90: Moved call to create_logfile so
that file gets open before it gets written to. KMO
2003-07-30 13:48 olson
* source/mesh/amr/paramesh3.0/update_grid_refinement.F90: A new
version which is specific to PM3.0. Eliminates unecessary calls to
guardcell filling. KMO
2003-07-30 13:46 olson
* source/mesh/amr/paramesh3.0/mark_grid_refinement.F90: New version
specific to paramesh3.0. This routine is changed to NOT fill
guardcells for ALL variables. KMO
2003-07-30 13:43 olson
* source/mesh/amr/paramesh3.0/ref_marking.F90: Fills guardcells
ONLY for the variable that is being tested for refinement. KMO
2003-07-30 13:42 olson
* source/mesh/amr/paramesh3.0/tot_bnd.F90: Added tot_bnd_work
routine to make guardcell filling for ref_marking more efficient.
KMO
2003-07-30 11:11 siegela
* source/source_terms/source_termsModule.F90: replaced first_call
block with init function for consistency with other modules.
2003-07-30 10:49 siegela
* source/source_terms/burn/burnModule.F90: added long description
of the changes I made.
2003-07-30 09:52 siegela
* source/driver/time_advancement/delta_form/advanceBlockList.F90:
forgot to add args to source_terms call in advance_blocklist
2003-07-29 17:01 sheeler
* source/io/amr/hdf5_serial/: checkpoint.F90, plotfile.F90: set gid
array = 0 to avoid copying uninitialized values which caused lahey
-debug to be upset.
2003-07-29 16:30 caceres
* setups/rt_new2/update_grid_refinement.F90: really stupid bug
2003-07-29 14:55 siegela
* source/source_terms/: burn.F90, burn/burn.F90,
burn/burn_block.F90, burn_nse/burn.F90: removed old burners.
2003-07-29 14:48 sheeler
* source/util/tools/logfile.F90: I think andrew did what I did when
I made my private fix to this file: forgot to include the local
copy of the variable in the output statement.
2003-07-29 14:45 siegela
* source/driver/: Config,
time_advancement/state_form/strang/advanceBlockList.F90,
time_dep/evolve.F90: driver changes for new burners
2003-07-29 14:39 siegela
* source/source_terms/: Makefile, burnModule.F90,
source_termsModule.F90, burn/Makefile, burn/burnModule.F90,
burn_nse/burnModule.F90: added burnModule which will replace
burn.F90 and in some cases burn_block also.
2003-07-29 14:31 siegela
* source/util/tools/logfile.F90: break_logfile was called with
constant char arg and was modifying the arg. This caused a runtime
error with -debug on lahey. Changed to make local copy in
subroutine.
2003-07-29 14:24 sheeler
* source/io/get_output_filename.F90: now checking to see if
output_directory is empty without going out of string bounds.
clever. bug caught by lahey -debug.
2003-07-28 17:22 kim
* setups/wd_def/: flash.par, init_block.F90: modified wd_def
flash.par defaults; bagged the 'small' setting of phi.
2003-07-28 15:11 caceres
* source/sites/frost.llnl.gov/Makefile.h: added LIB_PNG macro
2003-07-28 14:13 caceres
* setups/rt_new2/: Config, init_block.F90,
mark_grid_refinement.F90, update_grid_refinement.F90: Added switch
to implement Bruce's init_block (setting only closest cell). Also
added seitch to turn off "refinement throttling"
2003-07-27 17:45 dubey
* source/solvers/poisson/multipole/: init_mpole.F90,
spherical_block.F90: bug fixing
2003-07-26 21:33 vikram
* setups/2cyl/: 2cylimg.dat_s12, 2cylimg.dat_s15, 2cylimg.dat_s20,
flash.par, init_block.F90, Config: [no log message]
2003-07-26 19:42 nata
* setups/front_tracking_test2/Config: Made spherical coord default.
2003-07-26 19:41 nata
* setups/front_tracking_test2/Config: Added default modules, so it
can be configured with -auto.
2003-07-26 19:38 nata
* setups/front_tracking_test2/: flash.par, flash.par.cart3d,
flash.par.cyl2d: Changed parameters to match 1-d tests.
2003-07-26 19:19 dubey
* source/solvers/poisson/multipole/spherical_block.F90: Fixing the
nxb/nyb bug in spherical 2d multipole
2003-07-26 15:38 nata
* source/util/front_tracking/: DistanceToFront.F90,
MinCellSize.F90, front_tracking.F90: function MinCellSize converted
to the subroutine
2003-07-25 17:25 dubey
* source/solvers/poisson/multipole/spherical_block.F90: somewhat
better version
2003-07-25 16:48 dubey
* source/solvers/poisson/multipole/: Makefile,
compute_mpole_moments.F90, compute_mpole_potential.F90,
init_mpole.F90, mpole_common.F90, poisson.F90, spherical_block.F90:
corrections
2003-07-25 16:34 dubey
* source/solvers/poisson/multipole/init_mpole.F90: correction
2003-07-25 16:29 dubey
* source/solvers/poisson/multipole/find_center_of_mass.F90:
correction
2003-07-25 16:21 dubey
* source/solvers/poisson/multipole/zone_potential.F90: correcting
2003-07-25 16:20 dubey
* source/solvers/poisson/multipole/zone_moments.F90: [no log
message]
2003-07-25 16:14 kim
* setups/wd_def/flash.par: set use_erg_per_gram to .false. so as to
greatly improve life
2003-07-25 09:42 siegela
* source/sites/lahey_gin.asci.uchicago.edu/Makefile.h: added some
good debug flags to the debug line.
2003-07-25 06:38 olson
* source/driver/init_flash.F90: MOved call of create_logfile so
that the file that it opens is not written to until after its
created. KMO
2003-07-25 01:01 ricker
* setups/orbit/Config, setups/orbit/Modules.example,
source/io/amr/hdf5_parallel/checkpoint.F90,
source/io/amr/hdf5_serial/checkpoint.F90,
source/io/amr/hdf5_serial/h5_write.c,
source/solvers/poisson/multigrid/isobnd_mpole/zone_moments.F90: Bug
fix to particle read routines: if number of particles does not
divide number of processors, put floor((# particles)/(#
processors)) on all but the last processor, then put the remainder
on the last processor. Previously was using floor((# particles)/(#
processors)) + 1, for some reason; under certain circumstances this
would cause the code to try to read more particles than were
present. Affects both hdf5_serial and hdf5_parallel.
Removed erroneous barrier in hdf5_serial checkpoint_re that I
committed the other day... keep the one in checkpoint_wr.
Bug fix to h5_write_particles() for hdf5_serial: if no particles
for a given processor, exit without attempting to write anything.
Should this be added to hdf5_parallel too? Test first.
Syntax error fix in isobnd_mpole zone_moments() -- should this
module even be used anymore (or should isobnd_mpole_opt take its
place?)
For orbit problem, corrected erroneous Config entry for gravity
(how did this get in there?). Added an example Modules file to the
setup to demonstrate correct usage.
2003-07-24 19:00 jbgallag
* source/io/amr/hdf5_serial/checkpoint.F90: MPI_BARRIER call in
checkpoint_re line 1064 was deadlocking runs that restarted from
checkpoint, moved the mPI_BARRIER call at the end of the
if(RunningParticles) if statement in checkpoint_re
2003-07-24 18:01 calder
* setups/wd_def/: flash.par, user_bnd.F90: Added "diode" or "no
inflow" velocity boundary conditions. The change to the flash.par
is the addition of the bc_velocity_type flag.
2003-07-24 16:30 caceres
* tools/scripts/FlashStack.py: fixed parsing bug when there's an
interface block inside a function
2003-07-24 15:58 siegela
* setups/wd_def/init_block.F90: added save statment to some
first_call vars
2003-07-24 14:17 siegela
* source/materials/eos/helmholtz/eos.F90: args were listed as
inout, but some were used as out (depending on mode). For now,
just removed intent specifier so this would compile on lahey. Need
to work on this more later.
2003-07-24 14:17 siegela
* setups/wd_def/: Config, init_block.F90: fixed problem get phi
key.
2003-07-24 12:20 nata
* source/util/front_tracking/Makefile: Fixed typo.
2003-07-24 09:20 siegela
* source/util/front_tracking/MinCellSize.F90: removed redundant
declaration
2003-07-24 09:19 siegela
* setups/wd_def/init_block.F90: fixed a few double-definitions.
2003-07-23 17:33 sheeler
* tools/fidlr2/xflash.pro: for 1d slice, the limits on the y axis
work a little better.
2003-07-23 15:54 nata
* setups/front_tracking_test1/init_block.F90: bug fix: temperature
and presure are computed from density and internal energy
2003-07-23 15:48 nata
* source/util/front_tracking/MinCellSize.F90: bug fix related to
spherical geometry
2003-07-23 15:44 nata
* setups/front_tracking_test1/icAnalytical.F90.cos: bug fix:
division by zero for L=0
2003-07-23 15:43 calder
* setups/wd_def/coldwd_mchandra_damped.dat: Improved initial model.
2003-07-23 15:40 calder
* setups/wd_def/: Config, Config.1d_sph, Config.2d_cyl, flash.par,
init_block.F90: Added the two Config files for quick switching.
Updated the flash.par. Improved the init_block.F90 to better
handle the initial conditions on the flame model.
2003-07-23 14:09 siegela
* bin/: resetup, setup.py: add script to re-execute previous setup
2003-07-23 10:37 olson
* source/mesh/amr/paramesh2.0/mesh_interface.F90: Changes last
argument of call to amr_guardcell in mesh_guardcell so that there
is not a conflict with PM3. KMO
2003-07-23 10:36 olson
* source/hydro/explicit/split/hydro_sweep.F90: Changed last
arguement to mesh_guardcell so that PM3 can exchange guardcells
more efficiently when using split schemes. KMO
2003-07-23 10:33 olson
* source/mesh/amr/paramesh3.0/PARAMESH_USERS_AGREEMENT: Added the
paramesh users agreement file describing the terms and conditions
for using PARAMESH. KMO
2003-07-23 10:26 olson
* source/sites/bohr.gsfc.nasa.gov/: Makefile.h, Makefile.h.ifc,
Makefile.h.in: Site setup for Kevin's workstation at GSFC. KMO
2003-07-23 10:25 olson
* source/sites/thunder1/: Makefile.h, Makefile.h.ifc,
Makefile.h.in, Makefile.h~: Site setup for thunder1, a large
Boewulf at GSFC. KMO
2003-07-23 10:23 olson
* source/mesh/amr/paramesh3.0/: headers/amr_shmem.fh,
headers/clean_divb.fh, headers/constants.F, headers/io.F,
headers/mpi_morton.F, headers/paramesh_dimensions.F,
headers/paramesh_interfaces.F, headers/paramesh_mpi_interfaces.F,
headers/paramesh_preprocessor.fh, headers/physicaldata.F,
headers/prolong_arrays.F, headers/shmem_reduce.fh,
headers/timer.fh, headers/tracer.fh, headers/tree.F,
headers/workspace.F, mpi_source/mod_dep.list,
mpi_source/mpi_amr_1blk_guardcell.F,
mpi_source/mpi_amr_1blk_guardcell_c_to_f.F,
mpi_source/mpi_amr_1blk_restrict.F,
mpi_source/mpi_amr_boundary_block_info.F,
mpi_source/mpi_amr_bsort.F, mpi_source/mpi_amr_checkpoint.F,
mpi_source/mpi_amr_comm_setup.F,
mpi_source/mpi_amr_derefine_blocks.F,
mpi_source/mpi_amr_edge_average.F,
mpi_source/mpi_amr_edge_average_udt.F,
mpi_source/mpi_amr_edge_average_vdt.F,
mpi_source/mpi_amr_edge_diagonal_check.F,
mpi_source/mpi_amr_flux_conserve.F,
mpi_source/mpi_amr_flux_conserve_udt.F,
mpi_source/mpi_amr_flux_conserve_vdt.F,
mpi_source/mpi_amr_get_bc_settings.F,
mpi_source/mpi_amr_get_remote_block.F,
mpi_source/mpi_amr_get_remote_block_fvar.F,
mpi_source/mpi_amr_global_domain_limits.F,
mpi_source/mpi_amr_gsurr_blks.F, mpi_source/mpi_amr_guardcell.F,
mpi_source/mpi_amr_local_surr_blks.F,
mpi_source/mpi_amr_mirror_blks.F, mpi_source/mpi_amr_morton.F,
mpi_source/mpi_amr_morton_limits.F, mpi_source/mpi_amr_prolong.F,
mpi_source/mpi_amr_prolong_fc_divbconsist.F,
mpi_source/mpi_amr_redist_blk.F,
mpi_source/mpi_amr_refine_blocks.F,
mpi_source/mpi_amr_refine_derefine.F,
mpi_source/mpi_amr_reorder_grid.F, mpi_source/mpi_amr_restrict.F,
mpi_source/mpi_amr_restrict_bnd_data.F,
mpi_source/mpi_amr_restrict_bnd_data_vdt.F,
mpi_source/mpi_amr_restrict_edge_data.F,
mpi_source/mpi_amr_restrict_edge_data_vdt.F,
mpi_source/mpi_amr_restrict_fulltree.F,
mpi_source/mpi_amr_shmem_lib_1proc.F,
mpi_source/mpi_amr_store_comm_info.F,
mpi_source/mpi_amr_tree_setup.F, mpi_source/mpi_get_buffer.F,
mpi_source/mpi_get_edge_buffer.F, mpi_source/mpi_get_flux_buffer.F,
mpi_source/mpi_lib.F, mpi_source/mpi_mort_comm_for_surrblks.F,
mpi_source/mpi_morton1.F, mpi_source/mpi_morton_bnd.F,
mpi_source/mpi_morton_bnd_fluxcon.F,
mpi_source/mpi_morton_bnd_prolong1.F,
mpi_source/mpi_morton_bnd_restrict.F, mpi_source/mpi_pack_blocks.F,
mpi_source/mpi_pack_edges.F, mpi_source/mpi_pack_fluxes.F,
mpi_source/mpi_pack_tree_info.F, mpi_source/mpi_put_buffer.F,
mpi_source/mpi_put_edge_buffer.F, mpi_source/mpi_put_flux_buffer.F,
mpi_source/mpi_set_message_limits.F,
mpi_source/mpi_set_message_limits_unpack.F,
mpi_source/mpi_set_message_sizes.F, mpi_source/mpi_unpack_blocks.F,
mpi_source/mpi_unpack_edges.F, mpi_source/mpi_unpack_fluxes.F,
mpi_source/mpi_unpack_tree_info.F, mpi_source/mpi_wrapper_int.F,
mpi_source/mpi_wrapper_logical.F, mpi_source/mpi_wrapper_real.F,
mpi_source/rationalize_list.F, mpi_source/test_morton_arithmetic.F,
mpi_source/work.pcl, source/amr_1blk_cc_cp_remote.F,
source/amr_1blk_cc_prol_gen_unk_fun.F,
source/amr_1blk_cc_prol_gen_work_fun.F,
source/amr_1blk_cc_prol_genorder.F,
source/amr_1blk_cc_prol_inject.F, source/amr_1blk_cc_prol_linear.F,
source/amr_1blk_cc_prol_muscl.F,
source/amr_1blk_cc_prol_work_genorder.F,
source/amr_1blk_cc_prol_work_inject.F,
source/amr_1blk_cc_prol_work_linear.F,
source/amr_1blk_cc_prol_work_muscl.F, source/amr_1blk_copy_soln.F,
source/amr_1blk_ec_cp_remote.F, source/amr_1blk_ec_prol_gen_fun.F,
source/amr_1blk_ec_prol_genorder.F,
source/amr_1blk_ec_prol_linear.F, source/amr_1blk_fc_clean_divb.F,
source/amr_1blk_fc_cp_remote.F, source/amr_1blk_fc_prol_dbz.F,
source/amr_1blk_fc_prol_gen_fun.F,
source/amr_1blk_fc_prol_genorder.F,
source/amr_1blk_fc_prol_inject.F, source/amr_1blk_fc_prol_linear.F,
source/amr_1blk_fc_prol_muscl.F, source/amr_1blk_guardcell.F,
source/amr_1blk_guardcell_c_to_f.F,
source/amr_1blk_guardcell_f_to_c.F,
source/amr_1blk_guardcell_f_to_c_fil.F,
source/amr_1blk_guardcell_f_to_c_set.F,
source/amr_1blk_guardcell_reset.F, source/amr_1blk_guardcell_srl.F,
source/amr_1blk_nc_cp_remote.F, source/amr_1blk_nc_prol_gen_fun.F,
source/amr_1blk_nc_prol_genorder.F,
source/amr_1blk_nc_prol_linear.F, source/amr_1blk_restrict.F,
source/amr_1blk_restrict_cc.F, source/amr_1blk_save_soln.F,
source/amr_1blk_t_to_perm.F, source/amr_1blk_to_2copy.F,
source/amr_1blk_to_perm.F, source/amr_bc_block.F,
source/amr_bcset_init.F, source/amr_block_geometry.F,
source/amr_bsort.F, source/amr_checkpoint.F, source/amr_close.F,
source/amr_derefine_blocks.F, source/amr_edge_average.F,
source/amr_edge_average_udt.F, source/amr_edge_average_vdt.F,
source/amr_edge_diagonal_check.F, source/amr_flux_conserve.F,
source/amr_flux_conserve_udt.F, source/amr_flux_conserve_vdt.F,
source/amr_gsurrounding_blks.F, source/amr_guardcell.F,
source/amr_initialize.F, source/amr_mirror_blks.F,
source/amr_morton.F, source/amr_mpi_find_blk_in_buffer.F,
source/amr_perm_to_1blk.F, source/amr_prolong.F,
source/amr_prolong_cc_fun_init.F,
source/amr_prolong_face_fun_init.F,
source/amr_prolong_fc_divbconsist.F, source/amr_prolong_fun_init.F,
source/amr_redist_blk.F, source/amr_refine_blocks.F,
source/amr_refine_derefine.F, source/amr_reorder_grid.F,
source/amr_restrict.F, source/amr_restrict_bnd_data.F,
source/amr_restrict_bnd_data_vdt.F,
source/amr_restrict_eblock_marker.F, source/amr_restrict_ec_fun.F,
source/amr_restrict_edge.F, source/amr_restrict_edge_data.F,
source/amr_restrict_edge_data_vdt.F, source/amr_restrict_fc_fun.F,
source/amr_restrict_fulltree.F, source/amr_restrict_red.F,
source/amr_restrict_unk_fun.F, source/amr_restrict_unk_fun_recip.F,
source/amr_restrict_work_fun.F,
source/amr_restrict_work_fun_recip.F,
source/amr_set_runtime_parameters.F, source/amr_shmem_lib_1proc.F,
source/amr_shmem_reduce.F, source/amr_shmem_sgi_r8.F,
source/amr_surrounding_blks.F, source/amr_system_calls.F,
source/clean_divb.F, source/gtest_neigh_data.F,
source/gtest_neigh_data1.F, source/guardcell_test.F,
source/mesh_test.F, source/mod_dep.list,
source/morton_arithmetic.F, source/quicksort_index.F,
source/sparse_solver.F, source/test_neigh_data.F, source/work.pcl:
The REAL PM3.0 released files. KMO
2003-07-23 10:22 olson
* source/mesh/amr/paramesh3.0/: Makefile, init_paramesh_arrays.F90,
mesh_interface.F90, restrict_tree.F90: New version of restrict_tree
consistent with PM3.0. KMO
2003-07-23 10:04 olson
* source/mesh/amr/paramesh3.0/source/: amr_1blk_bc.F,
amr_1blk_cc_cp_remote.F, amr_1blk_cc_prol_gen_unk_fun.F,
amr_1blk_cc_prol_gen_work_fun.F, amr_1blk_cc_prol_genorder.F,
amr_1blk_cc_prol_inject.F, amr_1blk_cc_prol_linear.F,
amr_1blk_cc_prol_muscl.F, amr_1blk_cc_prol_work_genorder.F,
amr_1blk_cc_prol_work_inject.F, amr_1blk_cc_prol_work_linear.F,
amr_1blk_cc_prol_work_muscl.F, amr_1blk_copy_soln.F,
amr_1blk_ec_cp_remote.F, amr_1blk_ec_prol_gen_fun.F,
amr_1blk_ec_prol_genorder.F, amr_1blk_ec_prol_linear.F,
amr_1blk_fc_cp_remote.F, amr_1blk_fc_cp_remote.F.dan,
amr_1blk_fc_prol_gen_fun.F, amr_1blk_fc_prol_genorder.F,
amr_1blk_fc_prol_inject.F, amr_1blk_fc_prol_linear.F,
amr_1blk_fc_prol_muscl.F, amr_1blk_guardcell.F,
amr_1blk_guardcell_c_to_f.F, amr_1blk_guardcell_reset.F,
amr_1blk_guardcell_srl.F, amr_1blk_nc_cp_remote.F,
amr_1blk_nc_prol_gen_fun.F, amr_1blk_nc_prol_genorder.F,
amr_1blk_nc_prol_linear.F, amr_1blk_restrict.F,
amr_1blk_restrict_cc.F, amr_1blk_save_soln.F, amr_1blk_t_to_perm.F,
amr_1blk_to_2copy.F, amr_1blk_to_perm.F, amr_bc_block.F,
amr_bcset_init.F, amr_block_geometry.F, amr_bsort.F,
amr_checkpoint.F, amr_close.F, amr_derefine_blocks.F,
amr_edge_average.F, amr_edge_average_udt.F, amr_edge_average_vdt.F,
amr_edge_diagonal_check.F, amr_flux_conserve.F,
amr_flux_conserve_udt.F, amr_flux_conserve_vdt.F,
amr_gsurrounding_blks.F, amr_guardcell.F, amr_initialize.F,
amr_morton.F, amr_mpi_find_blk_in_buffer.F, amr_perm_to_1blk.F,
amr_prolong.F, amr_prolong_cc_fun_init.F,
amr_prolong_face_fun_init.F, amr_prolong_fc_divbconsist.F,
amr_prolong_fun_init.F, amr_redist_blk.F, amr_refine_blocks.F,
amr_refine_derefine.F, amr_reorder_grid.F, amr_restrict.F,
amr_restrict_bnd_data.F, amr_restrict_bnd_data_vdt.F,
amr_restrict_eblock_marker.F, amr_restrict_ec_fun.F,
amr_restrict_edge.F, amr_restrict_edge_data.F,
amr_restrict_edge_data_vdt.F, amr_restrict_fc_fun.F,
amr_restrict_red.F, amr_restrict_unk_fun.F,
amr_restrict_unk_fun_recip.F, amr_restrict_work_fun.F,
amr_restrict_work_fun_recip.F, amr_set_runtime_parameters.F,
amr_shmem_lib_1proc.F, amr_shmem_reduce.F, amr_shmem_sgi_r8.F,
amr_surrounding_blks.F, amr_system_calls.F,
changes_v2_to_v3_script, gtest_neigh_data.F, gtest_neigh_data1.F,
guardcell_test.F, mesh_test.F, mod_dep.list, morton_arithmetic.F,
quicksort_index.F, sed_cmd_v2_to_v3, test_neigh_data.F: Removed out
of date PM3. WIll be replaced by the REAL PM3. KMO
2003-07-23 09:41 olson
* source/mesh/amr/paramesh3.0/mpi_source/: changes_v2_to_v3_script,
gmake_amrmpisource, map_of_mpi_communications, mod_dep.list,
mpi_amr_1blk_guardcell.F, mpi_amr_1blk_guardcell_c_to_f.F,
mpi_amr_1blk_restrict.F, mpi_amr_bsort.F, mpi_amr_checkpoint.F,
mpi_amr_comm_setup.F, mpi_amr_derefine_blocks.F,
mpi_amr_edge_average.F, mpi_amr_edge_average_udt.F,
mpi_amr_edge_average_vdt.F, mpi_amr_edge_diagonal_check.F,
mpi_amr_flux_conserve.F, mpi_amr_flux_conserve_udt.F,
mpi_amr_flux_conserve_vdt.F, mpi_amr_get_remote_block.F,
mpi_amr_get_remote_block_fvar.F, mpi_amr_global_domain_limits.F,
mpi_amr_gsurr_blks.F, mpi_amr_guardcell.F,
mpi_amr_local_surr_blks.F, mpi_amr_morton.F,
mpi_amr_morton_limits.F, mpi_amr_prolong.F,
mpi_amr_prolong_fc_divbconsist.F, mpi_amr_redist_blk.F,
mpi_amr_refine_blocks.F, mpi_amr_refine_derefine.F,
mpi_amr_reorder_grid.F, mpi_amr_restrict.F,
mpi_amr_restrict_bnd_data.F, mpi_amr_restrict_bnd_data_vdt.F,
mpi_amr_restrict_edge_data.F, mpi_amr_restrict_edge_data_vdt.F,
mpi_amr_shmem_lib_1proc.F, mpi_amr_store_comm_info.F,
mpi_amr_surr_blks.F, mpi_amr_tree_setup.F, mpi_get_buffer.F,
mpi_get_edge_buffer.F, mpi_get_flux_buffer.F, mpi_get_morton.F,
mpi_lib.F, mpi_morton1.F, mpi_morton_bnd.F,
mpi_morton_bnd_fluxcon.F, mpi_morton_bnd_prolong1.F,
mpi_morton_bnd_restrict.F, mpi_pack.F, mpi_pack_blocks.F,
mpi_pack_edges.F, mpi_pack_fluxes.F, mpi_pack_tree_info.F,
mpi_put_buffer.F, mpi_put_edge_buffer.F, mpi_put_flux_buffer.F,
mpi_set_message_limits.F, mpi_set_message_limits_unpack.F,
mpi_set_message_sizes.F, mpi_unpack.F, mpi_unpack_blocks.F,
mpi_unpack_edges.F, mpi_unpack_fluxes.F, mpi_unpack_tree_info.F,
mpi_wrapper_int.F, mpi_wrapper_logical.F, mpi_wrapper_real.F,
rationalize_list.F, sed_cmd_v2_to_v3, test_morton_arithmetic.F:
Removing out of date PM3 files. To be replaced by the REAL PM3.
KMO
2003-07-23 09:29 olson
* source/mesh/amr/paramesh3.0/headers/: Makefile, amr_shmem.fh,
mpi_morton.F, paramesh_dimensions.F, paramesh_interfaces.F,
paramesh_mpi_interfaces.F, paramesh_preprocessor.fh,
physicaldata.F, prolong_arrays.F, shmem_reduce.fh, timer.fh,
tracer.fh, tree.F, workspace.F: Removing out of date PARAMESH3.0
FILES. To be replaced with the REAL PM3.0. KMO
2003-07-22 22:32 ricker
* source/io/amr/hdf5_serial/checkpoint.F90: Fixed two bugs in
serial HDF5 particle I/O: (1) Wasn't sending/receiving enough
particle buffers (stupid! stupid!), so some particles on processors
other than #0 were not getting written; (2) A bug fix suggested by
Greg Bauer of NCSA to avoid 'illegal storage access' errors under
VMI. Turns out the current version of VMI doesn't allocate enough
send/receive buffers. While processor #0 is dealing with data
arriving from other processors, the buffers were filling up. So
I've added two barriers to pace things.
2003-07-22 18:26 jbgallag
* bin/make_flashModules: fixed do loop at the bottom of script that
writes modules, modules in the do loop wasn't a variable, also took
out do loop that calculates num_modules replaced it with a single
command
2003-07-22 11:10 siegela
* setups/: sedov/init_block.F90, sedov_pm3/init_block.F90,
sedov_sph/init_block.F90, sedov_ug/init_block.F90,
source_terms_compilation_test/init_block.F90: added prof_file as
runtime parameter. added its definition to driver Config. Not sure
if this is best since it only appears in setups.
2003-07-22 10:33 siegela
* setups/burntest/wr_integrals.F90,
setups/cloop_mhd/wr_integrals.F90,
setups/flame_shear/wr_integrals.F90,
setups/front_tracking_test1/wr_integrals.F90,
setups/kppburntest/wr_integrals.F90,
setups/stirturb/wr_integrals.F90,
setups/wd_crushturbulence/wr_integrals.F90,
source/io/wr_integrals.F90: forgot to add save to fname
declaration.
2003-07-22 10:20 siegela
* source/io/wr_integrals.F90: added stats_file as runtime
parameter.
2003-07-22 10:19 siegela
* setups/: burntest/wr_integrals.F90, cloop_mhd/wr_integrals.F90,
flame_shear/wr_integrals.F90,
front_tracking_test1/wr_integrals.F90,
kppburntest/wr_integrals.F90, stirturb/wr_integrals.F90,
wd_crushturbulence/wr_integrals.F90: added stats_file as runtime
paramter.
2003-07-22 10:18 siegela
* source/driver/Config: added stats_file and prof_file definitions
as runtime parms.
2003-07-21 19:05 kim
* setups/front_tracking_test2/init_block.F90: put in missing
temperature interpolation. -kim
2003-07-21 09:36 siegela
* bin/make_flashModules: removed #include flash_defines.fh and
explicitly put MAX_STRING_LENGTH in flashModules.f. It is good to
avoid preprocessor directives in auto-generated source code, since
these cannot then be preprocessed with ./setup -preprocess.
2003-07-18 11:30 siegela
* bin/: make_bstats, make_flashModules, make_release, setup.py:
changed scripts froom c-shell to bourne shell to support cygwin (no
c-shell).
2003-07-15 16:14 jbgallag
* setups/dust_coll_mm_cart/init_block.F90: fixed sytax error line
24 added : after ONLY, use logfile, ONLY write_logile,
2003-07-14 16:36 caceres
* tools/sfocu/: Makefile.bluehorizon, Makefile.chiba,
Makefile.cube, Makefile.flash, Makefile.flashviz, Makefile.gin,
Makefile.gps, Makefile.monsun, Makefile.sphere: [no log message]
2003-07-14 16:33 caceres
* tools/sfocu/: flash_reader.c, flash_reader.h,
flash_reader_hdf4.c, flash_reader_hdf5.c, main.c, options.c,
options.h, sameblock.c, sameblock.h, sfocu.c: added switch (-t) to
match blocks approximately
2003-07-14 16:30 nata
* setups/front_tracking_test2/Config,
setups/front_tracking_test2/README,
setups/front_tracking_test2/flash.par,
setups/front_tracking_test2/init_block.F90,
source/source_terms/burn_nse/burn_block.F90,
source/util/front_tracking/AdvanceTrackerDRsph.F90,
source/util/front_tracking/FlameSpeedBlockSph.F90,
source/util/front_tracking/Makefile: Extended to spherical
coordinates. Setup front_tracking_test2 changed to be 1-D spherical
flame.
2003-07-14 16:24 weirs
* source/hydro/explicit/euler_ms/fct/: Config, hydro.F90,
hydro_data.F90, lcpfct_module.F90: Added switches for specifying
source terms. Choices are: no source, divergence of pressure, and
gravity and divergence of pressure. Note that divergence of
pressure is the usual to solve the Euler equations. This can be
dropped for, eg, BIC. Finally, gravity can be computed as a source
in the hydro to better capture hydrostatic equilibrium. Testing is
in progress.
2003-07-14 09:15 freis
* setups/: kppburntest/init_mat.F90, matchhead/init_block.F90,
odd_even/init_block.F90, type1a/init_block.F90,
geom_test/init_block.F90, helix/init_block.F90,
matchhead_1d/init_block.F90, twogamma/init_block.F90: removed
logfile import from subroutines that actually didn't call the
logfile
2003-07-13 11:47 freis
* setups/dust_coll/init_block.F90: added missing \'call\' to
write_logfile)
2003-07-12 13:02 sheeler
* source/sites/jazz.lcrc.anl.gov/: Makefile.h, README, flashrun,
pgi_softfile: adding site directory for jazz.
2003-07-12 10:53 freis
* setups/: pancake/init_block.F90, jeans/init_block.F90,
sn_popiii/init_block.F90, sphcoll/InitParticlePositions.F90,
sphcoll/init_block.F90: removed log_lun from logfile writing
statements and replace writing statements with write_logile()
2003-07-11 14:38 nata
* setups/front_tracking_test1/README: Some more text.
2003-07-11 14:18 jbgallag
* source/solvers/poisson/multigrid/poisson_mg_relax.F90: fixed a
syntx error in the writing of a logfile error message, added commas
after line 97
2003-07-11 13:12 freis
* setups/: dust_coll/init_block.F90, dust_coll_mm/init_block.F90,
dust_coll_mm_cart/init_block.F90: changed calls to logfile that
still used log_lun
2003-07-11 12:51 nata
* setups/front_tracking_test1/flash.par.ld: Changed refinement
criteria.
2003-07-11 12:27 freis
* source/solvers/poisson/multigrid_old/poisson.F90: added qualifier
to logfile access statement
2003-07-11 12:17 freis
* source/materials/composition/: C-O-Mg/init_mat.F90,
carbon-magnesium/init_mat.F90, carbon-nickel/init_mat.F90: removed
logfile access statement since modules are not using the logfile
2003-07-11 11:49 freis
* source/: gravity/poisson/InitGravity.F90,
solvers/poisson/multigrid_old/fftcg/poisson_mg_solve.F90: added
qualifier to logfile use statement
2003-07-11 11:35 freis
* source/: particles/InitParticles.F90,
solvers/helmholtz/multigrid/helmholtz.F90,
solvers/poisson/multigrid/poisson.F90,
solvers/poisson/multigrid/poisson_mg_relax.F90,
solvers/poisson/multigrid/isobnd_mpole_opt/zone_moments.F90: added
qualifier to logfile use statement
2003-07-11 09:32 freis
* source/util/tools/: perfmon.F90, PAPI/perfmon.F90: changed output
format of perf_summary
2003-07-11 09:12 freis
* source/: util/tools/logfile.F90, util/tools/perfmon.F90,
util/tools/PAPI/perfmon.F90, driver/abort_flash.F90,
driver/end_flash.F90: made break_logfile more general; it now
accepts a one-character string and writes it as a row to the
logfile
2003-07-11 08:28 freis
* source/driver/init_flash.F90: removed garbage code
2003-07-11 08:18 freis
* source/driver/x_refinement/init_flash.F90: removed unused
subroutines from use logfile statement
2003-07-10 20:22 jbgallag
* source/util/tools/Makefile: trying to fix compilation test
failures on sphere/gin, made perfmon explicitly dependent on
logfile
2003-07-10 19:20 jbgallag
* source/driver/init_flash.F90: removed log_lun from use logfile
module statement since it is no longer public, but only the logfile
module knows about and uses it.
2003-07-10 17:38 nata
* setups/front_tracking_test1/: Config, flash.par, flash.par.ld,
flash.par.sph, icAnalytical.F90, icAnalytical.F90.cos,
icAnalytical.F90.sph, init_block.F90: Renaming flash.par ->
flash.par.sph, icAnalytical.F90 -> icAnalytical.F90; get rid of
extra variable (ftkr) in Config; better approximation of initial
conditions inside the interface.
2003-07-10 15:07 vikram
* setups/2cyl/: flash.par, Config: [no log message]
2003-07-10 15:07 vikram
* setups/2cyl/init_block.F90:
Made small changes, defined smallx, changed slightly routine to
read in image.
2003-07-10 14:55 vikram
* setups/1cyl/: flash.par, Config: [no log message]
2003-07-10 14:54 vikram
* setups/1cyl/init_block.F90:
Made small changes, defined, smallx, altered slightly loop to read
in image
2003-07-10 14:46 weirs
* source/hydro/explicit/euler_ms/fct/: Config, Makefile: Cleaned up
a few typo's.
2003-07-10 12:34 freis
* source/: driver/x_refinement/init_flash.F90,
util/tools/logfile.F90: removed log_lun from public interface; only
the logfile module knows now about the logfile and writes to it
2003-07-10 12:01 freis
* source/solvers/poisson/multigrid_old/isobnd_mpole/init_mpole.F90:
changed statements writing to logfile; modules now pass a string
buffer to the logfile module for printing
2003-07-10 11:50 freis
* source/solvers/poisson/multigrid_old/:
isobnd_mpole/zone_moments.F90, isobnd_mpole/zone_potential.F90,
isobnd_mpole_opt/init_mpole.F90, isobnd_mpole_opt/zone_moments.F90,
isobnd_mpole_opt/zone_potential.F90: changed statements writing to
logfile; modules now pass a string buffer to the logfile module for
printing
2003-07-10 10:52 freis
* source/solvers/poisson/: multigrid/isobnd_mpole/init_mpole.F90,
multigrid/isobnd_mpole/zone_moments.F90,
multigrid/isobnd_mpole/zone_potential.F90,
multigrid_old/poisson_mg_relax.F90: changed statements printing to
logfile; modules now pass a string buffer to logfile module for
printing
2003-07-10 10:12 freis
* source/solvers/poisson/multigrid/: poisson_mg_relax.F90,
isobnd_mpole_opt/init_mpole.F90, isobnd_mpole_opt/zone_moments.F90,
isobnd_mpole_opt/zone_potential.F90: change printing statements to
logfile; now modules pass a string buffer to logfile module instead
of writing directly
2003-07-10 09:34 freis
* source/solvers/poisson/multipole/: init_mpole.F90,
zone_moments.F90, zone_potential.F90: changed printing statement to
logfile; now modules pass a string buffer to logfile module
2003-07-10 08:31 freis
* source/solvers/poisson/multipole/find_center_of_mass.F90: changed
printing statement of error message to logfile; module now passes a
string buffer to logfile module instead of writing directly to file
2003-07-09 15:56 kmriley
* source/mesh/ug/uniformGridII/createMpiTypes.c: the final fix -
with the fix for the z face guardcells and commiting the new
intermediate type
2003-07-09 15:39 weirs
* docs/HOWTO/PSC-Lemieux-HOWTO: Added HOWTO for lemieux at
Pittsburgh supercomputer center.
2003-07-09 15:38 weirs
* source/sites/: Aliases, lemieux.psc.edu/Makefile.h: Added
directory and Makefile.h for lemieux at Pittsburgh supercomputer
center. Updated Aliases file for lemieux.
2003-07-09 15:22 kmriley
* source/mesh/ug/uniformGridII/: createMpiTypes.c, grid_types.h,
guardcellFill.c, guardcellFillLocal.c, guardcellFillRemote.c,
initGrid.c, initLocalBlocks.c, routines.h, unitTest/initialize.c:
doh- an error that led to guardcell filling errors in certain
decompositions. currently lots of debugging information comes out.
the fix is there - i need to check for the error in z.
2003-07-09 14:34 kmriley
* source/mesh/ug/uniformGridII/: allocArrays.c,
calculateNeighborProc.c, createBlockCoordinates.c,
createBlockNeighbors.c, createTopology.c, decomposeNumProcs.c,
guardcellFill.c, guardcellFillLocal.c, initGrid.c,
initLocalBlocks.c, routines.h, unitTest/initialize.c: i made a
series of changing to the wy blocks are assigned coordinates. they
are actually global coords now. i thought this might help in a
debugging process
2003-07-09 12:13 freis
* source/solvers/helmholtz/multigrid/helmholtz_mg_relax.F90:
combined multi-line error message into one to be printed by logfile
module
2003-07-09 08:54 freis
* source/driver/end_flash.F90: optimized writing to logfile to
avoid opening the file three times; added run termination message
to stdout
2003-07-09 08:52 freis
* source/util/tools/logfile.F90: added test to stamp_logfile to see
if logfile is already open for writing; if not, it will be opened
and closed again before returning
2003-07-09 07:56 freis
* source/util/tools/logfile.F90: changed error message in logfile
2003-07-08 12:26 freis
* source/mesh/: amr/init_mesh.F90, ug/init_mesh.F90: added ONLY
qualifier to logfile use statements
2003-07-08 11:49 freis
* bin/setup.py: shortened leading white space in writing of
buildstamp.f to avoid string length conflicts with some compilers
2003-07-08 11:01 freis
* source/util/tools/logfile.F90: added a subroutine that writes a
line of a character passed into the subroutine to the logfile
2003-07-07 17:03 kmriley
* source/mesh/ug/uniformGridII/unitTest/initialize.c: better debug
statements for guardcell fill
2003-07-07 14:52 freis
* source/util/tools/logfile.F90: removed redundant var
2003-07-07 14:47 sheeler
* tools/fidlr2/create_variable.pro: now possible to view one level
of refinement output (obviously a pressing concern).
the code was breaking because this routine's slice of one variable
out of unk eliminated all indices with dimension one (which was
desired for the x, y, and z indices). The block index had
dimension one because there was only one block, was eliminated, and
code later on assumed it was there and crashed.
2003-07-07 13:29 kmriley
* source/mesh/ug/uniformGridII/: createMpiTypes.c, guardcellFill.c,
guardcellFillLocal.c, guardcellFillRemote.c, unitTest/initialize.c:
just minor debug changes
2003-07-06 16:04 siegela
* source/util/tools/Makefile: logfile no longer depends on
buildstamp, thank goodness.
2003-07-06 16:04 siegela
* source/util/tools/logfile.F90: buildstamp no longer a module, so
removed use statement.
2003-07-06 16:02 siegela
* bin/setup.py: changed build_stamp writer to write simple
subroutines rather than module for buildstamp.f.
2003-07-05 11:33 freis
* source/util/tools/: perfmon.F90, PAPI/perfmon.F90: copied new
performance summary subroutine in /PAPI/perfmon.F90
2003-07-05 11:26 freis
* source/util/tools/perfmon.F90: adjusted string length in format
trying to compensate for is error on flashviz of last testrun
2003-07-04 15:45 freis
* source/: driver/end_flash.F90, util/tools/logfile.F90,
util/tools/perfmon.F90: moved all statements that wrote to the
logfile in perfmon to the logfile module; perfmon now passes file
output to a buffer maintained by the logfile module. For now, this
will crash PAPI until that perfmon is updated
2003-07-03 17:40 siegela
* source/hydro/explicit/euler_ms/ppm/hydro.F90: some more cleaning
...
2003-07-03 17:03 siegela
* source/hydro/explicit/euler_ms/ppm/init_hydro.F90: wrapper to
hydro_init method in hydro.F90. This is called by init_flash.
2003-07-03 17:02 siegela
* source/hydro/explicit/euler_ms/ppm/hydro.F90: moved absurdly long
first_call block to hydro_init method. saved variables become
class scope.
2003-07-03 16:26 siegela
* source/hydro/init_hydro.F90: moved unk2, etc. init to
amr_initialize. THis routine does nothing now. Individual
submodules must supply their own init routines (as they do
already).
2003-07-03 16:19 siegela
* source/mesh/amr/paramesh2.0/amr_initialize.F90: added
initialization of unk2,unk3,unk4. This was in init_hydro, which
made no sense.
2003-07-02 20:14 caceres
* source/visualization/native/visualization.c: fixed crashing bug
that for some reason only showed up on restarts.
2003-07-02 16:13 kmriley
* source/mesh/solvers/pfm/paramesh_preprocessor_original.fh: this
is here for completeness. we can all of dougs code in flash. but,
we do not really need this. this is just a paramesh preocessor
setting nvar_work and work guardcells
2003-07-02 16:11 kmriley
* source/mesh/solvers/pfm/: README, bicgstab.F, manual.ps,
paramesh_preprocessor.fh, sparse_mod.F: new BiCGSTAB routines. seem
fine - check the paramesh_preprocessor file. this might need to be
wripped out and the right config stuff needs to be made available
somewhere.
2003-07-02 16:09 kmriley
* source/solvers/poisson/pfm/: Config, pfm.F90, pmatvec.F,
poisson.F90, pprecon.F: First draft hack in of the BiCGSTAB method
into flash. see following commits for the rest of the method.
need to complete the database calls in pfm and write the Config
properly.
2003-07-02 15:50 olson
* source/mesh/amr/paramesh3.0/: mesh_interface.F90,
headers/paramesh_preprocessor.fh: Added use paramesh_interfaces
where paramesh subroutines are called. KMO
2003-07-01 09:45 freis
* source/util/tools/logfile.F90: made line_break and data_delim
public so they can be called from other modules
2003-06-30 16:25 nata
* source/io/getvarlabels.F90: Removed empty space from "vs 1" name,
some viz packages might not like it.
2003-06-30 13:25 siegela
* source/mesh/grid.F90: initialized xcoord, ycoord, and zcoord to 0
before setting their values for real. This is because, when < 3
dim, zcoord e.g. is not set and thus contains garbage. Now it will
contain zero.
2003-06-30 12:00 siegela
* source/util/tools/get_opt.F90: changed to return 0 explicitly in
exists if opt not found, 1 otherwise. Otherwise, gargabe returned
on some compilers.
2003-06-30 10:38 freis
* source/driver/runtime_parameters.F90: added documentation
2003-06-27 22:10 calder
* setups/wd_def/init_block.F90: Fixed a slight bug in f.
2003-06-26 21:12 calder
* setups/wd_def/: Config, init_block.F90: Changes that seem to have
fixed things from Natasha and Alan
2003-06-26 15:33 calder
* setups/wd_def/flash.par: One more minor change to flash.par
2003-06-26 15:32 calder
* setups/wd_def/flash.par: Minor change to turn off restarting
2003-06-25 22:51 calder
* setups/wd_def/init_block.F90: A few changes that should not
substantively affect the results.
2003-06-25 17:10 nata
* setups/wd_def/: Config, init_block.F90: Made it compile.
2003-06-25 15:49 calder
* setups/wd_def/init_block.F90: Improved init_block.F90
2003-06-25 15:19 calder
* setups/wd_def/: Config, Makefile, README, coldwd_1p0msun.dat,
coldwd_mchandra.dat, composition_C-O-Mg.dat, flash.par,
init_block.F90: Files for the new white dwarf deflagration setup.
Very much a work in progress as of this checkin.
2003-06-25 13:42 nata
* source/: source_terms/burn_nse/burn_block.F90,
util/front_tracking/Config,
util/front_tracking/FlameSpeedBlock.F90,
util/front_tracking/FlameSpeedBlockCyl.F90,
util/front_tracking/Makefile: Variable flame speed is extended to
cylindrical coordinates.
2003-06-24 16:28 weirs
* source/util/mappers/: Makefile, map003to001.F90, map003to007.F90,
map007to003.F90, mappers.F90: Added variable set 007 for fct.
2003-06-24 16:22 weirs
* source/hydro/explicit/euler_ms/: Config, fct/Config,
fct/Makefile, fct/central_place.F90, fct/hydro.F90,
fct/hydro_data.F90, fct/init_hydro.F90, fct/lcpfct_module.F90:
Initial commit of flux-corrected transport module.
2003-06-24 14:51 nata
* source/util/front_tracking/: FlameSpeedBlock.F90, Makefile,
StateFromPhi.F90: More accurate estimate of unburned and burned
states based on released energy.
2003-06-23 16:42 kmriley
* source/driver/time_dep/Config: nothing was requiring gravity
2003-06-23 16:38 kmriley
* source/io/null/: output.F90, output_initial.F90: we actually made
the arguments _agree_ with the real calls rather than just sitting
there
2003-06-23 16:38 kmriley
* source/mesh/amr/paramesh3.x/: mpi_source/mpi_amr_guardcell.F,
mpi_source/mpi_amr_morton.F, mpi_source/mpi_amr_refine_blocks.F,
mpi_source/mpi_morton_bnd.F, mpi_source/mpi_morton_bnd_fluxcon.F,
mpi_source/mpi_morton_bnd_prolong1.F,
mpi_source/mpi_morton_bnd_restrict.F, source/amr_morton.F: a bunch
of updates to the code as a result of making lahey really care
2003-06-23 14:28 kmriley
* source/mesh/amr/paramesh3.x/: Makefile, init_from_scratch.F90,
init_paramesh_arrays.F90, mesh_interface.F90, ref_marking.F90,
tot_bnd.F90, user_bnd.F90, headers/amr_shmem.fh,
headers/mpi_morton.F, headers/paramesh_dimensions.F,
headers/paramesh_interfaces.F, headers/paramesh_mpi_interfaces.F,
headers/paramesh_preprocessor.fh, headers/physicaldata.F,
headers/prolong_arrays.F, headers/tree.F, headers/workspace.F,
mpi_source/mpi_amr_1blk_guardcell.F,
mpi_source/mpi_amr_1blk_guardcell_c_to_f.F,
mpi_source/mpi_amr_1blk_restrict.F,
mpi_source/mpi_amr_boundary_block_info.F,
mpi_source/mpi_amr_bsort.F, mpi_source/mpi_amr_checkpoint.F,
mpi_source/mpi_amr_comm_setup.F, mpi_source/mpi_amr_edge_average.F,
mpi_source/mpi_amr_edge_average_udt.F,
mpi_source/mpi_amr_edge_average_vdt.F,
mpi_source/mpi_amr_edge_diagonal_check.F,
mpi_source/mpi_amr_flux_conserve.F,
mpi_source/mpi_amr_flux_conserve_udt.F,
mpi_source/mpi_amr_flux_conserve_vdt.F,
mpi_source/mpi_amr_get_remote_block.F,
mpi_source/mpi_amr_get_remote_block_fvar.F,
mpi_source/mpi_amr_gsurr_blks.F, mpi_source/mpi_amr_guardcell.F,
mpi_source/mpi_amr_local_surr_blks.F,
mpi_source/mpi_amr_mirror_blks.F, mpi_source/mpi_amr_morton.F,
mpi_source/mpi_amr_morton_limits.F, mpi_source/mpi_amr_prolong.F,
mpi_source/mpi_amr_prolong_fc_divbconsist.F,
mpi_source/mpi_amr_redist_blk.F,
mpi_source/mpi_amr_refine_blocks.F,
mpi_source/mpi_amr_refine_derefine.F,
mpi_source/mpi_amr_reorder_grid.F, mpi_source/mpi_amr_restrict.F,
mpi_source/mpi_amr_restrict_bnd_data.F,
mpi_source/mpi_amr_restrict_bnd_data_vdt.F,
mpi_source/mpi_amr_restrict_edge_data.F,
mpi_source/mpi_amr_restrict_edge_data_vdt.F,
mpi_source/mpi_amr_restrict_fulltree.F,
mpi_source/mpi_amr_shmem_lib_1proc.F,
mpi_source/mpi_amr_store_comm_info.F,
mpi_source/mpi_amr_tree_setup.F, mpi_source/mpi_get_buffer.F,
mpi_source/mpi_get_edge_buffer.F, mpi_source/mpi_get_flux_buffer.F,
mpi_source/mpi_lib.F, mpi_source/mpi_morton_bnd.F,
mpi_source/mpi_morton_bnd_fluxcon.F,
mpi_source/mpi_morton_bnd_prolong1.F,
mpi_source/mpi_morton_bnd_restrict.F, mpi_source/mpi_pack.F,
mpi_source/mpi_pack_blocks.F, mpi_source/mpi_pack_edges.F,
mpi_source/mpi_pack_fluxes.F, mpi_source/mpi_pack_tree_info.F,
mpi_source/mpi_put_buffer.F, mpi_source/mpi_put_edge_buffer.F,
mpi_source/mpi_put_flux_buffer.F,
mpi_source/mpi_set_message_limits.F,
mpi_source/mpi_set_message_sizes.F, mpi_source/mpi_unpack.F,
mpi_source/mpi_unpack_blocks.F, mpi_source/mpi_unpack_fluxes.F,
mpi_source/mpi_unpack_tree_info.F, mpi_source/rationalize_list.F,
mpi_source/test_morton_arithmetic.F, source/Makefile,
source/amr_1blk_bc.F, source/amr_1blk_cc_cp_remote.F,
source/amr_1blk_cc_prol_gen_work_fun.F,
source/amr_1blk_cc_prol_genorder.F,
source/amr_1blk_cc_prol_inject.F, source/amr_1blk_cc_prol_linear.F,
source/amr_1blk_cc_prol_work_genorder.F,
source/amr_1blk_cc_prol_work_inject.F,
source/amr_1blk_cc_prol_work_linear.F,
source/amr_1blk_cc_prol_work_muscl.F, source/amr_1blk_copy_soln.F,
source/amr_1blk_ec_cp_remote.F, source/amr_1blk_ec_prol_genorder.F,
source/amr_1blk_fc_cp_remote.F, source/amr_1blk_fc_prol_genorder.F,
source/amr_1blk_fc_prol_muscl.F, source/amr_1blk_guardcell.F,
source/amr_1blk_guardcell_c_to_f.F,
source/amr_1blk_guardcell_f_to_c_fil.F,
source/amr_1blk_guardcell_f_to_c_set.F,
source/amr_1blk_guardcell_srl.F, source/amr_1blk_nc_cp_remote.F,
source/amr_1blk_nc_prol_genorder.F, source/amr_1blk_restrict.F,
source/amr_1blk_to_2copy.F, source/amr_1blk_to_perm.F,
source/amr_bc_block.F, source/amr_block_geometry.F,
source/amr_bsort.F, source/amr_checkpoint.F, source/amr_close.F,
source/amr_derefine_blocks.F, source/amr_gsurrounding_blks.F,
source/amr_guardcell.F, source/amr_initialize.F,
source/amr_morton.F, source/amr_mpi_find_blk_in_buffer.F,
source/amr_perm_to_1blk.F, source/amr_prolong.F,
source/amr_prolong_fc_divbconsist.F, source/amr_redist_blk.F,
source/amr_refine_blocks.F, source/amr_refine_derefine.F,
source/amr_reorder_grid.F, source/amr_restrict_ec_fun.F,
source/amr_restrict_fc_fun.F, source/amr_restrict_fulltree.F,
source/amr_restrict_unk_fun.F, source/amr_restrict_unk_fun_recip.F,
source/amr_restrict_work_fun.F,
source/amr_set_runtime_parameters.F, source/amr_shmem_reduce.F,
source/amr_shmem_sgi_r8.F, source/amr_surrounding_blks.F,
source/amr_system_calls.F, source/gtest_neigh_data1.F,
source/guardcell_test.F, source/mesh_test.F,
source/morton_arithmetic.F, source/test_neigh_data.F: newest,
bestest paramesh3.
2003-06-23 14:27 kmriley
* setups/sedov_pm3/: Config, amr_1blk_bcset.F, tot_bnd.F90: new
files to fix problems. these are the boundary conditions done
RIGHT by kevin
2003-06-23 14:09 kmriley
* source/database/amr/paramesh3.0/Makefile: this shoudl work for
the new version of paramesh3 not the old one. and, i have had
enough of hacking it every time i set it up
2003-06-23 09:02 siegela
* source/mesh/amr/paramesh3.x/: amr_1blk_bcset.F,
headers/amr_shmem.fh, headers/mpi_morton.F,
headers/paramesh_dimensions.F, headers/paramesh_interfaces.F,
headers/paramesh_mpi_interfaces.F,
headers/paramesh_preprocessor.fh, headers/physicaldata.F,
headers/prolong_arrays.F, headers/tree.F, headers/workspace.F,
mpi_source/mpi_amr_1blk_guardcell.F,
mpi_source/mpi_amr_1blk_guardcell_c_to_f.F,
mpi_source/mpi_amr_1blk_restrict.F,
mpi_source/mpi_amr_checkpoint.F, mpi_source/mpi_amr_comm_setup.F,
mpi_source/mpi_amr_edge_average.F,
mpi_source/mpi_amr_edge_average_udt.F,
mpi_source/mpi_amr_edge_average_vdt.F,
mpi_source/mpi_amr_edge_diagonal_check.F,
mpi_source/mpi_amr_flux_conserve_udt.F,
mpi_source/mpi_amr_flux_conserve_vdt.F,
mpi_source/mpi_amr_get_remote_block.F,
mpi_source/mpi_amr_gsurr_blks.F, mpi_source/mpi_amr_guardcell.F,
mpi_source/mpi_amr_local_surr_blks.F, mpi_source/mpi_amr_morton.F,
mpi_source/mpi_amr_morton_limits.F, mpi_source/mpi_amr_prolong.F,
mpi_source/mpi_amr_prolong_fc_divbconsist.F,
mpi_source/mpi_amr_redist_blk.F,
mpi_source/mpi_amr_refine_blocks.F,
mpi_source/mpi_amr_refine_derefine.F,
mpi_source/mpi_amr_reorder_grid.F, mpi_source/mpi_amr_restrict.F,
mpi_source/mpi_amr_restrict_bnd_data.F,
mpi_source/mpi_amr_restrict_bnd_data_vdt.F,
mpi_source/mpi_amr_restrict_edge_data.F,
mpi_source/mpi_amr_restrict_edge_data_vdt.F,
mpi_source/mpi_amr_shmem_lib_1proc.F,
mpi_source/mpi_amr_store_comm_info.F,
mpi_source/mpi_amr_tree_setup.F, mpi_source/mpi_get_buffer.F,
mpi_source/mpi_get_edge_buffer.F, mpi_source/mpi_get_flux_buffer.F,
mpi_source/mpi_lib.F, mpi_source/mpi_morton_bnd.F,
mpi_source/mpi_morton_bnd_fluxcon.F,
mpi_source/mpi_morton_bnd_prolong1.F,
mpi_source/mpi_morton_bnd_restrict.F, mpi_source/mpi_pack.F,
mpi_source/mpi_pack_blocks.F, mpi_source/mpi_pack_edges.F,
mpi_source/mpi_pack_fluxes.F, mpi_source/mpi_pack_tree_info.F,
mpi_source/mpi_put_buffer.F, mpi_source/mpi_put_edge_buffer.F,
mpi_source/mpi_put_flux_buffer.F,
mpi_source/mpi_set_message_limits.F,
mpi_source/mpi_set_message_sizes.F, mpi_source/mpi_unpack.F,
mpi_source/mpi_unpack_blocks.F, mpi_source/mpi_unpack_tree_info.F,
mpi_source/rationalize_list.F, mpi_source/test_morton_arithmetic.F,
source/amr_1blk_bc.F, source/amr_1blk_cc_cp_remote.F,
source/amr_1blk_cc_prol_gen_work_fun.F,
source/amr_1blk_cc_prol_genorder.F,
source/amr_1blk_cc_prol_inject.F, source/amr_1blk_cc_prol_linear.F,
source/amr_1blk_cc_prol_work_genorder.F,
source/amr_1blk_cc_prol_work_inject.F,
source/amr_1blk_cc_prol_work_linear.F,
source/amr_1blk_cc_prol_work_muscl.F, source/amr_1blk_copy_soln.F,
source/amr_1blk_ec_cp_remote.F, source/amr_1blk_ec_prol_genorder.F,
source/amr_1blk_fc_cp_remote.F, source/amr_1blk_fc_prol_genorder.F,
source/amr_1blk_fc_prol_muscl.F, source/amr_1blk_guardcell.F,
source/amr_1blk_guardcell_c_to_f.F,
source/amr_1blk_guardcell_srl.F, source/amr_1blk_nc_cp_remote.F,
source/amr_1blk_nc_prol_genorder.F, source/amr_1blk_restrict.F,
source/amr_1blk_to_2copy.F, source/amr_bc_block.F,
source/amr_block_geometry.F, source/amr_checkpoint.F,
source/amr_close.F, source/amr_derefine_blocks.F,
source/amr_flux_conserve.F, source/amr_gsurrounding_blks.F,
source/amr_guardcell.F, source/amr_initialize.F,
source/amr_morton.F, source/amr_mpi_find_blk_in_buffer.F,
source/amr_perm_to_1blk.F, source/amr_prolong.F,
source/amr_prolong_fc_divbconsist.F, source/amr_redist_blk.F,
source/amr_refine_blocks.F, source/amr_refine_derefine.F,
source/amr_reorder_grid.F, source/amr_restrict_ec_fun.F,
source/amr_restrict_fc_fun.F, source/amr_restrict_unk_fun.F,
source/amr_restrict_unk_fun_recip.F,
source/amr_restrict_work_fun.F, source/amr_shmem_reduce.F,
source/amr_shmem_sgi_r8.F, source/amr_surrounding_blks.F,
source/amr_system_calls.F, source/gtest_neigh_data1.F,
source/guardcell_test.F, source/mesh_test.F,
source/morton_arithmetic.F, source/test_neigh_data.F: adding
Kevin's latest and greatest pm3 changes ...
2003-06-22 15:48 jbgallag
* tools/io_bench/ncmpi/calc_stats.pl: fixed a few things for
calculating mb/sec
2003-06-21 21:20 jbgallag
* tools/io_bench/flash_benchmark_io.F90: addded VIRGO definition
for hardcoded file name to /mnt/pvfs/flash_io/bench/hdf5 on virgo
2003-06-21 21:09 jbgallag
* tools/io_bench/Makefile.virgo: virgo makefile
2003-06-21 21:09 jbgallag
* tools/io_bench/Makefile.linux: [no log message]
2003-06-21 21:05 jbgallag
* tools/io_bench/ncmpi/Makefile.virgo: add -DVIRGO
2003-06-21 21:05 jbgallag
* tools/io_bench/ncmpi/Makefile.linux: [no log message]
2003-06-21 21:05 jbgallag
* tools/io_bench/ncmpi/flash_benchmark_io.F90: fixed file path name
hardcoded /mnt/pvfs/flash_io_bench/ncmpi for virgo
2003-06-21 20:58 jbgallag
* tools/io_bench/ncmpi/Makefile.virgo: makefile for virgo, hard
wired pvfs directory /mnt/pvfs/flash_io_bench/ncmpi
2003-06-21 20:23 jbgallag
* tools/io_bench/ncmpi/: Makefile.linux, flash_benchmark_io.F90:
Makefile.linux
2003-06-21 20:17 jbgallag
* tools/io_bench/ncmpi/calc_stats.pl: crude stats for multiple io
bench runs
2003-06-21 20:16 jbgallag
* tools/io_bench/ncmpi/ncmpi_flash.h: ncmpi_flash.h
2003-06-21 20:15 jbgallag
* tools/io_bench/ncmpi/: flash_benchmark_io.F90, flash_release.f:
[no log message]
2003-06-21 20:15 jbgallag
* tools/io_bench/ncmpi/plotfile_ncmpi_parallel.F90: fixed var
names, plot variables we're not even being written before
2003-06-21 20:14 jbgallag
* tools/io_bench/ncmpi/ncmpi_parallel_write_single.c: fixed var
names
2003-06-21 20:14 jbgallag
* tools/io_bench/ncmpi/ncmpi_parallel_write.c: fixed variables
names, took out some unecessar arguments to functions
2003-06-21 20:13 jbgallag
* tools/io_bench/ncmpi/checkpoint_ncmpi_parallel.F90: made changes
to the label names so that all the variables we're written the
benchmark as it stood was not writing all the variables
2003-06-21 15:43 jbgallag
* tools/io_bench/ncmpi/ncmpi_parallel_write_single.c: Took out some
unecessary parameters in write_header and write_unk added
write_lrefine_sp and nodetype and gid
2003-06-21 15:43 jbgallag
* tools/io_bench/ncmpi/ncmpi_parallel_write.c: Took out some
unecessary parameters in write_header and wrire_unk
2003-06-21 15:42 jbgallag
* tools/io_bench/ncmpi/flash_benchmark_io.F90: had to put null
print statements to get the io bench to work at all on sphere and
cube, have no idea why, the print statements are around the call to
checkpoint_wr_par
2003-06-21 15:41 jbgallag
* tools/io_bench/ncmpi/checkpoint_ncmpi_parallel.F90: Took out some
unecessary stuff
2003-06-21 15:41 jbgallag
* tools/io_bench/ncmpi/: README, block_boundary_data.fh, common.fh,
definitions.fh, flash_benchmark_io.F90.b, flash_benchmark_io.F90.r,
flash_release.f, get_mfluid_property.F90, ncmpi_file_interface.c,
ncmpi_flash.h, numfluids.fh, physicaldata.fh,
plotfile_ncmpi_parallel.F90, run_flash_io, tree.fh: [no log
message]
2003-06-21 15:41 jbgallag
* tools/io_bench/ncmpi/Makefile.sphere: Makefile for both sphere
and cube ncmpi io bench
2003-06-21 15:41 jbgallag
* tools/io_bench/ncmpi/Makefile.sp: IMB sp makefile ncmpi io bench
2003-06-21 15:40 jbgallag
* tools/io_bench/ncmpi/Makefile.linux: general linux makefile for
ncmpi io bench
2003-06-21 15:40 jbgallag
* tools/io_bench/ncmpi/Makefile.chiba: Chiba makefile ncmpi io
bench
2003-06-21 15:40 jbgallag
* tools/io_bench/ncmpi/Makefile.blue: Makefile for asci blue?
2003-06-21 15:38 jbgallag
* tools/io_bench/ncmpi/Makefile: base makefile for ncmpi io bench
(Bluehorizon)
2003-06-20 14:38 vikram
* setups/: 2cyl/init_block.F90, 1cyl/init_block.F90: [no log
message]
2003-06-19 17:51 jbgallag
* source/io/amr/ncmpi/ncmpi_parallel_read.c: removed record_label
from read_unknowns function, was casuing a crash on linux systems
2003-06-19 17:50 jbgallag
* source/io/amr/ncmpi/checkpoint.F90: Took out some debug print
statements
2003-06-19 16:51 nata
* setups/front_tracking_test2/: Config, Makefile, README,
composition_C-O-Mg.dat, composition_fuel+ash.dat, flash.par,
init_block.F90: Adding test for spherical flame in cylinrrical
coordinates.
2003-06-19 16:49 nata
* source/: source_terms/burn_nse/burn_block.F90,
util/front_tracking/Makefile, util/front_tracking/MinCellSize.F90,
util/front_tracking/AdvanceTrackerDRcyl.F90: Cylindrical
coordinates added.
2003-06-19 15:49 jbgallag
* source/io/amr/ncmpi/: ncmpi_parallel_write.c,
ncmpi_parallel_write_single.c: Took out uneeded if statements
2003-06-19 14:37 jbgallag
* source/sites/flashviz.uchicago.edu/Makefile.h: corrected typo
2003-06-19 14:34 jbgallag
* source/sites/flashviz.uchicago.edu/Makefile.h: added lib entry
for ncmpi
2003-06-19 13:19 jbgallag
* setups/wd_convect/hydro_sweep.F90: Fixed a syntax error in the
calculation of unk1blk
2003-06-19 11:03 nata
* setups/front_tracking_test1/icAnalytical.F90.cos,
setups/front_tracking_test1/icAnalytical.F90.zigzag,
source/util/front_tracking/DistanceToFront.F90: Made interfaces 3-D
compartible.
2003-06-18 18:20 nata
* setups/front_tracking_test1/: flash.par, icAnalytical.F90,
icAnalytical.F90.cos, init_block.F90: spherical flame setup added
2003-06-18 18:13 jbgallag
* source/sites/Prototypes/IRIX64/Makefile.h: added right path for
64-bit hdf5
2003-06-17 18:53 zingale
* setups/wdc/: Config, day_before.dat, day_before_b.dat, flash.par,
init_block.F90: a simple attempt at stabilizing the Hoeflich model
using the new monopole self-gravity HSE mapper. The transition to
the fluff temperature needs to be dealt with better, through some
smooth interpolant.
2003-06-17 15:53 jbgallag
* source/sites/cvs.asci.uchicago.edu/Makefile.h: Makefile for
cvs.asci.uchicago.edu
2003-06-16 13:08 caceres
* setups/rt_new2/: Config, Makefile, diagnost_rt.F90, evolve.F90,
flash.par, init_block.F90, init_from_scratch.F90, init_mat.F90,
mark_grid_refinement.F90, numerical_noise.c,
update_grid_refinement.F90, user_bnd.F90: based off of rt_new --
hydrostatic background and bc, throttled lrefine_max. work in
progress.
2003-06-16 13:06 caceres
* setups/vis_test/: Config, flash.F90, flash.par, init_block.F90: a
test setup for the vis module
2003-06-16 13:04 caceres
* source/visualization/native/: Config, genConfig.py,
visualization.c: fixed some performance bugs in draw_blocks added
plane cuts in 3d (needs more testing)
2003-06-13 16:27 jbgallag
* source/driver/physical_constants.F90: Took out second definition
of "buffer" on line 611 which caused catostrophic compile errors
using the lahey f90 compiler on gin
2003-06-13 14:43 nata
* source/: source_terms/burn_nse/burn_block.F90,
util/front_tracking/AdvanceTrackerADR.F90,
util/front_tracking/AdvanceTrackerDR.F90,
util/front_tracking/Makefile, util/front_tracking/track_block.F90:
Renamed subroutine track_block to AdvanceTrackerDR, added a version
of the same subrotine with advection (AdvanceTrackerADR), added a
switch between them depending on ft_use_hydro parameter.
2003-06-13 14:36 nata
* source/: source_terms/burn_nse/Config,
util/front_tracking/Config: Removed non-needed enuc variable.
2003-06-12 18:19 siegela
* source/mesh/amr/paramesh2.0/amr_redist_blk.F90: somehow
deallocation code didn't make it into repository, so this dies on
IBM's. Should be working now ...
2003-06-12 16:18 nata
* source/: source_terms/burn_nse/burn_block.F90,
util/front_tracking/FlameSpeedBlock.F90,
util/front_tracking/Makefile: A subroutine added to compute flame
speed from unburned density and temperature and subgrid model based
on the speed of rising R-T bubble. The conditions ahead of the
front (unburned density and temperature) are estimated very
approximately and will need more work.
2003-06-12 16:15 jbgallag
* source/mesh/amr/paramesh2.0/amr_redist_blk.F90: changed MPI_INT
to MPI_INTEGER in MPI_AllGathers
2003-06-12 15:59 nata
* source/util/front_tracking/DistanceToFront.F90: Bug fix: wrong
sign in signed distance to front in 1-D.
2003-06-12 15:57 nata
* setups/front_tracking_test1/init_block.F90: Increased the width
of narrow band where smothered initial conditions are computed.
2003-06-12 15:53 nata
* source/util/front_tracking/front_tracking.F90: Changed definition
of laminar width for KPP reaction to make it consistent with
laminar width for Khokhlov reaction.
2003-06-11 18:37 jbgallag
* source/mesh/amr/paramesh3.0/mesh_interface.F90: added wrappers
from mesh_prolong and mesh_test_refine, paramesh3.0 based stuff
hasn't been compiling
2003-06-11 10:42 freis
* source/: driver/physical_constants.F90,
driver/runtime_parameters.F90, materials/multifluid.F90,
util/tools/logfile.F90: moved writing routines that wrote directly
to the logfile into the logfile module; output is now written into
a buffer that is returned to and printed by the logfile module
2003-06-10 20:16 siegela
* source/mesh/amr/paramesh2.0/amr_redist_blk.F90: completely
rewritten based on generic mpi parallel aray reorder routine. This
has been tested within paramesh but only anecdotally with Flash.
Need to keep an eye on whether results change in Flash. They
shouldn't if it is done properly.
Changes are being incorporated into newest version of paramesh3 at
goddard.
2003-06-10 17:36 zingale
* source/hydro/explicit/split/ppm/interp.F90: splot --> split
2003-06-10 14:45 nata
* setups/front_tracking_test1/flash.par.gamma,
setups/front_tracking_test1/flash.par.helmholtz,
setups/front_tracking_test1/init_block.F90,
source/source_terms/burn_nse/Config,
source/source_terms/burn_nse/burn_block.F90,
source/source_terms/burn_nse/burn_nse.F90,
source/util/front_tracking/Config: added switch between constant
and variable flame speed.
2003-06-10 14:00 freis
* bin/setup.py: removed superfluous character that some compilers
mistook as a formatting instruction
2003-06-10 12:01 nata
* setups/front_tracking_test1/init_block.F90,
source/util/front_tracking/DistanceToFront.F90,
source/util/front_tracking/Makefile,
source/util/front_tracking/MinCellSize.F90,
source/util/front_tracking/front_tracking.F90: Cleaning up
front_tracking module. Moving logically independent subroutines to
separate files.
2003-06-10 10:48 nata
* source/: source_terms/burn_nse/burn_block.F90,
source_terms/burn_nse/burn_nse.F90,
util/front_tracking/front_tracking.F90: Minimal changes needed for
variable flame speed tracking. To be cleaned.
2003-06-09 15:29 jbgallag
* tools/flash2chombo/h5_read.c,
source/io/amr/ncmpi/init_global_parms_checkpoint.F90: moving from
flash2.3 to flash2
2003-06-09 15:29 jbgallag
* tools/flash2chombo/flash2chombo.F90,
source/io/amr/ncmpi/checkpoint.F90: moving from FLASH2.3 to FLASH2
2003-06-07 08:40 freis
* bin/setup.py: some compilers seemed to miss a quote before the
return statement of buildstamp.f; added some white space
2003-06-06 16:46 nata
* source/: source_terms/burn_nse/burn_block.F90,
util/front_tracking/front_tracking.F90,
util/front_tracking/track_block.F90: Changed interfaces to handle
variable flame speed and to work on block; case "B" (ft_use_hydro =
.false.) is dropped out.
2003-06-06 11:58 nata
* setups/front_tracking_test1/icAnalytical.F90: Bug fix (wrong sing
for y-velocity).
2003-06-06 10:52 freis
* bin/setup.py, source/util/tools/Makefile,
source/util/tools/logfile.F90: turned buildstamp.f into a module
that now returns build date stamp and system info through two
separate calls; module does not write directly to a file anymore
but subroutines return a string
2003-06-05 18:05 zingale
* source/util/initialization/hse_monopole/: Config, Makefile,
init_1d.F90: a hacked versoin of the hse mapper that works with the
multipole gravity solver, by computing the 1-d self-gravity of the
initial model while we force it into HSE submission. The
reconstruction on the densityin the gravity solve is currently
piecewise constant only -- this shoulod probably be changed. The
fluff temperature also needs some wiggling -- right now, it is set
to temp_cutoff or the last value of the initial model (if
temp_cutoff is negative). Ideally some smooth (i.e. tanh) function
would interpolate between the model and the desired fluff
temperature.
The mapper takes the exact same initial model format as the others,
and as described in the sample_map writeup. The HSEization is
performed a la method V in the standard HSE setup (cubic
reconstruction of pressure, quadratic reconstruction of (rho g).
2003-06-05 13:59 nata
* setups/front_tracking_test1/init_block.F90,
setups/front_tracking_test1/user_bnd.F90,
source/source_terms/burn_nse/burn_block.F90,
source/source_terms/burn_nse/burn_nse.F90: Renaming: de* -> nse*.
2003-06-05 13:19 freis
* source/driver/runtime_parameters.F90: changed list_parm_context()
from writing to logfile to passing a buffer to the logfile module
2003-06-05 13:17 freis
* source/: driver/init_flash.F90,
driver/x_refinement/init_flash.F90, util/tools/Makefile,
util/tools/logfile.F90: moved list_constants_db() and
list_mfluid_db() calls from init_flash to logfile;
2003-06-05 12:49 nata
* setups/front_tracking_test1/: Config, Makefile, icAnalytical.F90,
icAnalytical.F90.zigzag, init_block.F90: More accurate initial
velocity and pressure. A lot of cleaning.
2003-06-05 11:38 freis
* source/util/tools/Makefile: added prerequisite logfile target
2003-06-04 17:50 kmriley
* docs/flash/users_guide/: flash2.2_ug.pdf.gz, flash2.2_ug.ps.gz:
do not want old users guide. will commit new ones when brain is les
like oatmeal
2003-06-04 17:49 kmriley
* docs/flash/users_guide/source_terms.tex: the new timestep also
got away from me in the changes
2003-06-04 16:45 zingale
* source/util/initialization/hse/init_1d.F90: update the eader to
remove some no longer used runtime parametrers
2003-06-03 14:13 zingale
* setups/sedov_sph/init_block.F90: add support for 3-d spherical
coordinates. This runs without crashing now, but I don't have any
way to look at the resultsat the moment.
2003-06-03 14:12 zingale
*
source/mesh/amr/paramesh2.0/quadratic_spherical/amr_prolong_gen_unk
_fun.F90: add support for 3-d spherical coordinates --this is the
last of the necessary mesh changes for 3-d spherical coordinates.
They should still be considered very much beta-version changes.
2003-06-02 19:04 kmriley
* Readme: test commit and a change of reference to 2.2 to 2.
2003-06-02 18:42 kmriley
* Makefile, Readme, setup, bin/make_bstats, bin/make_flashModules,
bin/make_release, bin/setup.py, bin/setupGUI,
docs/FAQ/FLASH_FAQ.txt, docs/FAQ/Tagging_FAQ.txt,
docs/HOWTO/ASCI-Blue-Pacific-HOWTO, docs/HOWTO/ASCI-Nirvana-HOWTO,
docs/HOWTO/ASCI-QSC-HOWTO, docs/HOWTO/ASCI-Red-HOWTO,
docs/HOWTO/Chiba-HOWTO, docs/HOWTO/FLASH-HDF5-HOWTO,
docs/HOWTO/FLASH-Jumpshot-HOWTO, docs/HOWTO/Linux-Movies-HOWTO,
docs/HOWTO/NERSC-Seaborg-HOWTO, docs/HOWTO/SGI-Benchmark-HOWTO,
docs/HOWTO/SGI-MPI-Batch-HOWTO, docs/flash/dev_guide/Makefile,
docs/flash/dev_guide/flash_dg.tex,
docs/flash/users_guide/2blast_conv.ps,
docs/flash/users_guide/2blast_soln.ps,
docs/flash/users_guide/Makefile, docs/flash/users_guide/README,
docs/flash/users_guide/acknowledgment.tex,
docs/flash/users_guide/adding_solvers.tex,
docs/flash/users_guide/advection.ps,
docs/flash/users_guide/arch.tex,
docs/flash/users_guide/asci_med_logo.ps,
docs/flash/users_guide/block_structure.eps,
docs/flash/users_guide/bw_dens.ps,
docs/flash/users_guide/bw_magy.ps,
docs/flash/users_guide/bw_pres.ps,
docs/flash/users_guide/bw_velx.ps,
docs/flash/users_guide/bw_vely.ps,
docs/flash/users_guide/cosmology.eps,
docs/flash/users_guide/cosmology.sxd,
docs/flash/users_guide/cosmology.tex,
docs/flash/users_guide/creating_problems.tex,
docs/flash/users_guide/cyl_prolong.epsi,
docs/flash/users_guide/cyl_quad.epsi,
docs/flash/users_guide/dm_pancake.ps,
docs/flash/users_guide/driver.eps,
docs/flash/users_guide/driver.tex, docs/flash/users_guide/dust1.ps,
docs/flash/users_guide/dust2.ps,
docs/flash/users_guide/example.eps, docs/flash/users_guide/f3.ps,
docs/flash/users_guide/fidlr.tex,
docs/flash/users_guide/fidlr2_xflash_contour.eps,
docs/flash/users_guide/fidlr2_xflash_file_info.eps,
docs/flash/users_guide/fidlr2_xflash_file_select.eps,
docs/flash/users_guide/fidlr2_xflash_hist.eps,
docs/flash/users_guide/fidlr2_xflash_main.eps,
docs/flash/users_guide/fidlr2_xflash_query.eps,
docs/flash/users_guide/fidlr2_xflash_vars.eps,
docs/flash/users_guide/fidlr2_xflash_vel.eps,
docs/flash/users_guide/flash2.2_ug.pdf.gz,
docs/flash/users_guide/flash2.2_ug.ps.gz,
docs/flash/users_guide/flash2.3_ug.tex,
docs/flash/users_guide/flash21_dir.ps,
docs/flash/users_guide/flash_arch_3.ps,
docs/flash/users_guide/flash_blur1.ps,
docs/flash/users_guide/flash_flow1.ps,
docs/flash/users_guide/flash_flow2.ps,
docs/flash/users_guide/flux2.epsi,
docs/flash/users_guide/flux_cons.ps,
docs/flash/users_guide/gas_pancake.ps,
docs/flash/users_guide/gid.ps, docs/flash/users_guide/gravity.eps,
docs/flash/users_guide/gravity.tex,
docs/flash/users_guide/hydro.eps, docs/flash/users_guide/hydro.tex,
docs/flash/users_guide/intro.tex, docs/flash/users_guide/io.eps,
docs/flash/users_guide/io.tex, docs/flash/users_guide/iv1.ps,
docs/flash/users_guide/iv2.ps, docs/flash/users_guide/iv3.ps,
docs/flash/users_guide/iv4.ps,
docs/flash/users_guide/jeans_disp.ps,
docs/flash/users_guide/jeans_ener.ps,
docs/flash/users_guide/license.tex,
docs/flash/users_guide/materials.eps,
docs/flash/users_guide/materials.tex,
docs/flash/users_guide/mesh.eps, docs/flash/users_guide/mesh.tex,
docs/flash/users_guide/oddeven_hlle.ps,
docs/flash/users_guide/oddeven_nohlle.ps,
docs/flash/users_guide/orbit_plot.ps,
docs/flash/users_guide/orszag_tang_dens.ps,
docs/flash/users_guide/orszag_tang_magf.ps,
docs/flash/users_guide/particle.eps,
docs/flash/users_guide/particles.tex,
docs/flash/users_guide/poistest.eps,
docs/flash/users_guide/porting_flash.tex,
docs/flash/users_guide/prof.ps,
docs/flash/users_guide/quickstart.tex,
docs/flash/users_guide/references.tex,
docs/flash/users_guide/rk1.ps, docs/flash/users_guide/rk2.ps,
docs/flash/users_guide/sedov_2d_compare.ps,
docs/flash/users_guide/sedov_3d_single.ps,
docs/flash/users_guide/sedov_pressure.ps,
docs/flash/users_guide/setup.tex, docs/flash/users_guide/sfocu.tex,
docs/flash/users_guide/shu_osher_ic.ps,
docs/flash/users_guide/shu_osher_ppm.ps,
docs/flash/users_guide/shu_osher_ref.ps,
docs/flash/users_guide/single_block.eps,
docs/flash/users_guide/sod_2d_density.ps,
docs/flash/users_guide/sod_compare.ps,
docs/flash/users_guide/sod_single.ps,
docs/flash/users_guide/solvers.eps,
docs/flash/users_guide/solvers.tex,
docs/flash/users_guide/source_terms.tex,
docs/flash/users_guide/sourceterms.eps,
docs/flash/users_guide/sph_prolong.epsi,
docs/flash/users_guide/test_cases.tex,
docs/flash/users_guide/uofc_logo.ps,
docs/flash/users_guide/util.eps, docs/flash/users_guide/util.tex,
docs/flash/users_guide/vis_wt.eps,
docs/flash/users_guide/vis_wt.png,
docs/flash/users_guide/visualization.tex,
docs/flash/users_guide/wind_a.ps, docs/flash/users_guide/wind_b.ps,
docs/flash/users_guide/wind_compare.ps,
docs/flash/users_guide/wind_kh_detail.ps,
docs/flash/users_guide/xflash_output.ps, docs/paramesh/README,
docs/paramesh/T3E.gif, docs/paramesh/advect_muscl.html,
docs/paramesh/amr.html, docs/paramesh/amr_1d_example.html,
docs/paramesh/amr_compile.html, docs/paramesh/amr_example1.gif,
docs/paramesh/amr_gallery.html, docs/paramesh/amr_intro.html,
docs/paramesh/amr_ref_guide.html,
docs/paramesh/amr_test_refinement.html,
docs/paramesh/amr_tutorial.html,
docs/paramesh/amr_users_guide.html, docs/paramesh/bar6.gif,
docs/paramesh/block_boundary_data.html,
docs/paramesh/block_indexing.gif, docs/paramesh/block_numbers.gif,
docs/paramesh/borg3.gif, docs/paramesh/borg4.gif,
docs/paramesh/bounding_box.gif, docs/paramesh/bx_xz_100dt.gif,
docs/paramesh/by_yz_100dt.gif, docs/paramesh/bz_xz_100dt.gif,
docs/paramesh/bz_yz_100dt.gif, docs/paramesh/conserve_interp.gif,
docs/paramesh/create_initial_tree.html, docs/paramesh/del2_89a.gif,
docs/paramesh/density_xz_100dt.gif,
docs/paramesh/density_yz_100dt.gif,
docs/paramesh/diagonal_stencils.gif,
docs/paramesh/diffusion_eqn.gif,
docs/paramesh/diffusion_eqn_89a.gif,
docs/paramesh/dir_structure.gif, docs/paramesh/edge_average.gif,
docs/paramesh/export.gif, docs/paramesh/facevar_locations.gif,
docs/paramesh/flux_conserve.gif,
docs/paramesh/godonov2d_borg_images.html,
docs/paramesh/godonov2d_jet_images.html,
docs/paramesh/grid_strategy.gif,
docs/paramesh/grid_strategy_nr.gif, docs/paramesh/header_inc.html,
docs/paramesh/hydro1d.html, docs/paramesh/hydro_3d.html,
docs/paramesh/initial_datas.html, docs/paramesh/jet7.gif,
docs/paramesh/jet7_w.gif, docs/paramesh/mhdfct3d_images.html,
docs/paramesh/morton_ordering.gif, docs/paramesh/nbounding_box.gif,
docs/paramesh/nconserve_interp.gif,
docs/paramesh/nedge_average.gif, docs/paramesh/nflux_conserve.gif,
docs/paramesh/nmorton_ordering.gif, docs/paramesh/nrl_100dt_3d.gif,
docs/paramesh/nrl_100dt_3d_nogrid.gif, docs/paramesh/paramesh.html,
docs/paramesh/physicaldata.html, docs/paramesh/pointers.html,
docs/paramesh/sod_initial.html, docs/paramesh/sod_solution.gif,
docs/paramesh/sod_solution_exp.gif, docs/paramesh/spectbar.gif,
docs/paramesh/tree.html, docs/paramesh/tutor_fin_soln89a.gif,
docs/paramesh/tutor_init_mesh89a.gif,
docs/paramesh/tutor_init_soln89a.gif,
docs/paramesh/tutor_new_mesh89a.gif,
docs/paramesh/tutor_new_soln89a.gif, docs/paramesh/up.gif,
docs/paramesh3.0/Makefile, docs/paramesh3.0/Makefile.am,
docs/paramesh3.0/Makefile.in, docs/paramesh3.0/T3E.gif,
docs/paramesh3.0/advect_muscl.html, docs/paramesh3.0/amr.html,
docs/paramesh3.0/amr_1blk_bcset_example.html,
docs/paramesh3.0/amr_1d_example.html,
docs/paramesh3.0/amr_compile.html,
docs/paramesh3.0/amr_design_strategy.html,
docs/paramesh3.0/amr_example1.gif,
docs/paramesh3.0/amr_gallery.html, docs/paramesh3.0/amr_gmake.html,
docs/paramesh3.0/amr_intro.html,
docs/paramesh3.0/amr_mpi_prefetching.html,
docs/paramesh3.0/amr_published_papers.html,
docs/paramesh3.0/amr_ref_guide.html,
docs/paramesh3.0/amr_shmem.html,
docs/paramesh3.0/amr_test_refinement.html,
docs/paramesh3.0/amr_tutorial.html,
docs/paramesh3.0/amr_tutorial_mpi.html,
docs/paramesh3.0/amr_tutorial_npgc.html,
docs/paramesh3.0/amr_users_guide.html,
docs/paramesh3.0/amr_variable_dt.html,
docs/paramesh3.0/amr_version2.0_mods.html,
docs/paramesh3.0/amr_version2.1_mods.html,
docs/paramesh3.0/amr_version3.0_mods.html,
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setups/mag_bubble/init_block.F90,
setups/mag_bubble/paper_bc_plots.pro,
setups/mag_bubble/paper_bc_plots2.pro,
setups/mag_bubble/submit_atm, setups/mag_bubble/user_bnd.F90,
setups/matchhead/Config, setups/matchhead/flash.par,
setups/matchhead/flash.par.batch, setups/matchhead/init_block.F90,
setups/matchhead/submit_mh, setups/matchhead_1d/Config,
setups/matchhead_1d/flash.par, setups/matchhead_1d/flash.par.5e6,
setups/matchhead_1d/init_block.F90, setups/neitest/Config,
setups/neitest/flash.par, setups/neitest/init_block.F90,
setups/neitest/update_soln.F90, setups/nova/Config,
setups/nova/Makefile, setups/nova/README, setups/nova/flash.par,
setups/nova/init_block.F90, setups/nova/mix.F90,
setups/nova/mixing_subgrid.F90, setups/nova/nova-abund.dat,
setups/nova/nova-model.dat, setups/nova/nova.dat,
setups/nova/source_termsModule.F90, setups/nova/tot_bnd.F90,
setups/nova/non-numrecipies/hunt.F90,
setups/nova/non-numrecipies/polint.F90,
setups/nova/novamodels/Makefile,
setups/nova/novamodels/convertprofile.c,
setups/nova/novamodels/convective/nova-abund.dat,
setups/nova/novamodels/convective/nova-model.dat,
setups/nova/novamodels/preconvecting/nova-abund.dat,
setups/nova/novamodels/preconvecting/nova-model-T640,
setups/nova/novamodels/preconvecting/nova-model.dat,
setups/nova/novamodels/preconvective/nova-abund.dat,
setups/nova/novamodels/preconvective/nova-model.dat,
setups/odd_even/Config, setups/odd_even/flash.par,
setups/odd_even/init_block.F90, setups/orbit/Config,
setups/orbit/InitParticlePositions.F90, setups/orbit/Makefile,
setups/orbit/flash.par, setups/orbit/init_block.F90,
setups/orbit/ref_marking.F90, setups/orbit/wr_integrals.F90,
setups/orszag_tang/Config, setups/orszag_tang/flash.par,
setups/orszag_tang/init_block.F90, setups/pancake/Config,
setups/pancake/InitParticlePositions.F90, setups/pancake/Makefile,
setups/pancake/flash.par, setups/pancake/init_block.F90,
setups/pancake/init_mat.F90,
setups/pancake/mark_grid_refinement.F90, setups/poistest/Config,
setups/poistest/Makefile, setups/poistest/flash.F90,
setups/poistest/flash.par, setups/poistest/init_block.F90,
setups/pp-hse/Config, setups/pp-hse/flash.par,
setups/pp-hse/init_block.F90, setups/ppm-new/Config,
setups/ppm-new/flash.par, setups/ppm-new/init_block.F90,
setups/rad_test/Config, setups/rad_test/evolve.F90,
setups/rad_test/flash.par, setups/rad_test/init_block.F90,
setups/rad_test/init_mat.F90, setups/relsod/Config,
setups/relsod/eos3d.F90, setups/relsod/flash.par,
setups/relsod/init_block.F90, setups/relsod/init_block_inhomo.F90,
setups/relsod/init_block_inhomo2.F90, setups/riemann_2d/Config,
setups/riemann_2d/flash.par, setups/riemann_2d/flash.par.4contact,
setups/riemann_2d/init_block.F90, setups/rosetta/Config,
setups/rosetta/Makefile, setups/rosetta/flash.par,
setups/rosetta/init_block.F90, setups/rosetta/mhd_sweep.F90,
setups/rosetta/user_bnd.F90, setups/rosetta/zcurrent.F90,
setups/rt/Config, setups/rt/Makefile, setups/rt/flash.par,
setups/rt/init_block.F90, setups/rt/init_mat.F90,
setups/rt/user_bnd.F90, setups/rt_mhd/Config,
setups/rt_mhd/Makefile, setups/rt_mhd/flash.par,
setups/rt_mhd/init_block.F90, setups/rt_mhd/init_mat.F90,
setups/rt_mhd/mark_grid_refinement.F90, setups/rt_mhd/user_bnd.F90,
setups/rt_new/Config, setups/rt_new/Makefile,
setups/rt_new/diagnost_rt.F90, setups/rt_new/evolve.F90,
setups/rt_new/flash.par, setups/rt_new/init_block.F90,
setups/rt_new/init_mat.F90, setups/rt_new/mark_grid_refinement.F90,
setups/rt_new/numerical_noise.c, setups/rt_new/user_bnd.F90,
setups/rt_new_pm3/Config, setups/rt_new_pm3/Makefile,
setups/rt_new_pm3/diagnost_rt.F90, setups/rt_new_pm3/evolve.F90,
setups/rt_new_pm3/flash.par, setups/rt_new_pm3/init_block.F90,
setups/rt_new_pm3/init_mat.F90,
setups/rt_new_pm3/mark_grid_refinement.F90,
setups/rt_new_pm3/user_bnd.F90, setups/sample_map/Config,
setups/sample_map/README, setups/sample_map/flash.par,
setups/sample_map/init_block.F90, setups/sample_map/inputfile.in,
setups/scaling_test/Config, setups/scaling_test/README.doscalings,
setups/scaling_test/divide_domain.F90,
setups/scaling_test/doscalings, setups/scaling_test/flash.par,
setups/scaling_test/init_block.F90,
setups/scaling_test/init_from_scratch.F90,
setups/scaling_test/scale, setups/scaling_test/timings,
setups/sedov/Config, setups/sedov/flash.par,
setups/sedov/init_block.F90, setups/sedov_pm3/Config,
setups/sedov_pm3/flash.par, setups/sedov_pm3/init_block.F90,
setups/sedov_sph/Config, setups/sedov_sph/compare_sedov.pro,
setups/sedov_sph/compare_sedov_polar.pro,
setups/sedov_sph/flash.par, setups/sedov_sph/flash.par.2d,
setups/sedov_sph/init_block.F90, setups/sedov_ug/Config,
setups/sedov_ug/flash.par, setups/sedov_ug/init_block.F90,
setups/shock2cyl_3d/2cylimg.dat, setups/shock2cyl_3d/Config,
setups/shock2cyl_3d/flash.par, setups/shock2cyl_3d/init_block.F90,
setups/shock2cyl_3d/init_mat.F90,
setups/shock2cyl_3d/mark_grid_refinement.F90,
setups/shockcyl_3d/1cyl_img, setups/shockcyl_3d/Config,
setups/shockcyl_3d/flash.par, setups/shockcyl_3d/init_block.F90,
setups/shockcyl_3d/init_mat.F90,
setups/shockcyl_3d/mark_grid_refinement.F90,
setups/shu_osher/Config, setups/shu_osher/Makefile,
setups/shu_osher/flash.par, setups/shu_osher/init_block.F90,
setups/shu_osher/init_block.c, setups/shu_osher/user_bnd.F90,
setups/sn_popiii/Config, setups/sn_popiii/Makefile,
setups/sn_popiii/flash.par, setups/sn_popiii/init_block.F90,
setups/sn_popiii/readtable.f, setups/sod/Config,
setups/sod/doconvergence, setups/sod/flash.par,
setups/sod/flash.par.rhd, setups/sod/flash.par.stationary,
setups/sod/init_block.F90, setups/sod/init_block.c,
setups/sod/shocktube.pro, setups/sod/soderror.pro,
setups/sod_sph/Config, setups/sod_sph/Makefile,
setups/sod_sph/flash.par, setups/sod_sph/init_block.F90,
setups/soundwave/Config, setups/soundwave/flash.par,
setups/soundwave/init_block.F90, setups/soundwave/soundwave.pro,
setups/soundwave/soundwaveerror.pro,
setups/source_terms_compilation_test/Config,
setups/source_terms_compilation_test/flash.par,
setups/source_terms_compilation_test/init_block.F90,
setups/sphcoll/Config, setups/sphcoll/InitParticlePositions.F90,
setups/sphcoll/flash.par, setups/sphcoll/init_block.F90,
setups/spitzer_condtest/Config, setups/spitzer_condtest/flash.par,
setups/spitzer_condtest/init_block.F90, setups/stirturb/Config,
setups/stirturb/flash.par, setups/stirturb/init_block.F90,
setups/stirturb/wr_integrals.F90, setups/t1a_convect/Config,
setups/t1a_convect/Makefile, setups/t1a_convect/MarkRefLib.F90,
setups/t1a_convect/calcpot.pro, setups/t1a_convect/day_before.dat,
setups/t1a_convect/day_before_b.dat, setups/t1a_convect/evolve.F90,
setups/t1a_convect/flash.par, setups/t1a_convect/hunt.F90,
setups/t1a_convect/hydro_sweep.F90,
setups/t1a_convect/init_block.F90,
setups/t1a_convect/mark_grid_refinement.F90,
setups/t1a_convect/polint.F90,
setups/t1a_convect/spherical_hse_1d.F90, setups/twogamma/Config,
setups/twogamma/Makefile, setups/twogamma/README,
setups/twogamma/flash.par, setups/twogamma/init_block.F90,
setups/twogamma/init_mat.F90, setups/twogamma/user_bnd.F90,
setups/type1a/Config, setups/type1a/coldwd_1p0msun.dat,
setups/type1a/flash.par, setups/type1a/init_block.F90,
setups/wd_convect/Config, setups/wd_convect/Config.1d_sph,
setups/wd_convect/Config.2d_cyl, setups/wd_convect/Makefile,
setups/wd_convect/README, setups/wd_convect/day_before.dat,
setups/wd_convect/day_before_b.dat, setups/wd_convect/eos3d.F90,
setups/wd_convect/flash.par, setups/wd_convect/flash.par.1d_sph,
setups/wd_convect/flash.par.2d_cyl,
setups/wd_convect/hydro_sweep.F90,
setups/wd_convect/init_block.F90,
setups/wd_convect/spherical_hse_1d.F90,
setups/wd_crushturbulence/Config,
setups/wd_crushturbulence/Makefile,
setups/wd_crushturbulence/flash.par,
setups/wd_crushturbulence/init_block.F90,
setups/wd_crushturbulence/init_from_scratch.F90,
setups/wd_crushturbulence/turb_ic.dat.gz,
setups/wd_crushturbulence/user_bnd.F90,
setups/wd_crushturbulence/wr_integrals.F90,
setups/wd_crushturbulence/makeICs/Makefile,
setups/wd_crushturbulence/makeICs/README,
setups/wd_crushturbulence/makeICs/angles.c,
setups/wd_crushturbulence/makeICs/angles.h,
setups/wd_crushturbulence/makeICs/ic.c,
setups/wd_crushturbulence/makeICs/ic.h,
setups/wd_crushturbulence/makeICs/rotate.c,
setups/wd_crushturbulence/makeICs/rotate.h,
setups/wd_crushturbulence/makeICs/spectrum.c,
setups/wd_crushturbulence/makeICs/spectrum.h,
setups/wd_crushturbulence/makeICs/vk.c,
setups/wd_crushturbulence/makeICs/vk.h, setups/windtunnel/Config,
setups/windtunnel/Makefile, setups/windtunnel/divide_domain.F90,
setups/windtunnel/flash.par, setups/windtunnel/init_block.F90,
setups/windtunnel/init_block.c, setups/windtunnel/user_bnd.F90,
setups/xrb_hse_test/Config, setups/xrb_hse_test/Makefile,
setups/xrb_hse_test/README, setups/xrb_hse_test/amr_uniform.pro,
setups/xrb_hse_test/batch_vis, setups/xrb_hse_test/bc_figure.pro,
setups/xrb_hse_test/bc_plots.pro,
setups/xrb_hse_test/burst_model.dat,
setups/xrb_hse_test/burst_model_cool.dat,
setups/xrb_hse_test/flash.par, setups/xrb_hse_test/flash.par.batch,
setups/xrb_hse_test/hse_plots.pro,
setups/xrb_hse_test/init_block.F90,
setups/xrb_hse_test/paper_bc_plots.pro,
setups/xrb_hse_test/paper_bc_plots2.pro,
setups/xrb_hse_test/paper_init_order.pro,
setups/xrb_hse_test/ppm_hse_comp.pro,
setups/xrb_hse_test/submit_xrb, setups/xrb_hse_test/user_bnd.F90,
setups/xrb_spread/Config, setups/xrb_spread/Makefile,
setups/xrb_spread/README, setups/xrb_spread/flash.par,
setups/xrb_spread/flash.par.cyl, setups/xrb_spread/init_1d.F90,
setups/xrb_spread/init_block.F90, setups/xrb_spread/user_bnd.F90,
source/cosmology/Config,
source/cosmology/CosmologicalFunctions.F90,
source/cosmology/Cosmology.F90,
source/cosmology/ExpansionTimestep.F90,
source/cosmology/Friedmann.F90, source/cosmology/Makefile,
source/cosmology/RedshiftHydro.F90,
source/cosmology/matter+lambda/Config,
source/cosmology/matter+lambda/CosmologicalFunctions.F90,
source/cosmology/matter+lambda/Friedmann.F90,
source/cosmology/matter+lambda/Makefile,
source/cosmology/null/ExpansionTimestep.F90,
source/cosmology/null/RedshiftHydro.F90, source/database/Config,
source/database/Makefile, source/database/dBaseConstants.h,
source/database/dBaseCoords.F90,
source/database/dBaseCoordsByName.F90,
source/database/dBaseCoordsByNumber.F90,
source/database/dBaseData.F90, source/database/dBaseDataByName.F90,
source/database/dBaseDataByNumber.F90,
source/database/dBaseDataByPointer.F90,
source/database/dBaseErrors.F90, source/database/dBaseKey.F90,
source/database/runtime_scratch.F90, source/database/variables.F90,
source/database/amr/Config, source/database/amr/Makefile,
source/database/amr/dBaseBoundaryData.F90,
source/database/amr/dBaseBoundaryDataByName.F90,
source/database/amr/dBaseBoundaryDataByPointer.F90,
source/database/amr/paramesh2.0/Config,
source/database/amr/paramesh2.0/Makefile,
source/database/amr/paramesh2.0/dBase.F90,
source/database/amr/paramesh2.0/dBase.int,
source/database/amr/paramesh2.0/dBaseDeclarations.F90,
source/database/amr/paramesh2.0/dBaseIncludes.F90,
source/database/amr/paramesh2.0/dBaseProperties.F90,
source/database/amr/paramesh2.0/dBaseTree.F90,
source/database/amr/paramesh2.0/physicaldata.F90,
source/database/amr/paramesh2.0/physicaldata_dynamic.F90,
source/database/amr/paramesh2.0/tree.F90,
source/database/amr/paramesh2.0/tree_dynamic.F90,
source/database/amr/paramesh2.0/workspace.F90,
source/database/amr/paramesh2.0/workspace_dynamic.F90,
source/database/amr/paramesh3.0/Config,
source/database/amr/paramesh3.0/Makefile,
source/database/amr/paramesh3.0/dBase.F90,
source/database/amr/paramesh3.0/dBaseDataByNumber.F90,
source/database/amr/paramesh3.0/dBaseDeclarations.F90,
source/database/amr/paramesh3.0/dBaseIncludes.F90,
source/database/amr/paramesh3.0/dBaseProperties.F90,
source/database/amr/paramesh3.0/dBaseTree.F90,
source/database/ug/Config, source/database/ug/Makefile,
source/database/ug/dBase.F90, source/database/ug/dBase.int,
source/database/ug/dBaseBoundaryData.F90,
source/database/ug/dBaseBoundaryDataByName.F90,
source/database/ug/dBaseBoundaryDataByPointer.F90,
source/database/ug/dBaseIncludes.F90,
source/database/ug/dBaseProperties.F90,
source/database/ug/dBaseTree.F90,
source/database/ug/uniformGrid/Makefile,
source/database/ug/uniformGrid/dBaseDeclarations.F90,
source/database/ug/uniformGrid/dBaseIncludes.F90,
source/database/ug/uniformGrid/dBaseTree.F90,
source/database/ug/uniformGridII/GridMappers.c,
source/database/ug/uniformGridII/Makefile,
source/database/ug/uniformGridII/dBaseDeclarations.F90,
source/database/ug/uniformGridII/dBaseIncludes.F90,
source/database/ug/uniformGridII/dBaseTree.F90,
source/database/ug/uniformGridII/physicaldata.F90,
source/driver/Config, source/driver/Makefile,
source/driver/abort_flash.F90,
source/driver/convert_var_cons_to_prim.F90,
source/driver/convert_var_prim_to_cons.F90,
source/driver/driver.int, source/driver/end_flash.F90,
source/driver/flash.F90, source/driver/init_flash.F90,
source/driver/init_from_checkpoint.F90,
source/driver/init_from_scratch.F90, source/driver/mangle_names.h,
source/driver/physical_constants.F90,
source/driver/read_parameters.F90,
source/driver/runtime_parameters.F90,
source/driver/signal_handler.c, source/driver/rhd/Config,
source/driver/rhd/Makefile,
source/driver/rhd/convert_var_cons_to_prim.F90,
source/driver/rhd/convert_var_prim_to_cons.F90,
source/driver/time_advancement/Config,
source/driver/time_advancement/Makefile,
source/driver/time_advancement/init_time_advancement.F90,
source/driver/time_advancement/delta_form/Config,
source/driver/time_advancement/delta_form/Makefile,
source/driver/time_advancement/delta_form/advanceBlockList.F90,
source/driver/time_advancement/delta_form/time_advancement.F90,
source/driver/time_advancement/delta_form/euler1/Makefile,
source/driver/time_advancement/delta_form/euler1/time_advancement_p
arameters.F90,
source/driver/time_advancement/delta_form/rk2n/Config,
source/driver/time_advancement/delta_form/rk2n/Makefile,
source/driver/time_advancement/delta_form/rk2n/williamson3/time_adv
ancement_parameters.F90,
source/driver/time_advancement/state_form/Config,
source/driver/time_advancement/state_form/strang/Makefile,
source/driver/time_advancement/state_form/strang/advanceBlockList.F
90,
source/driver/time_advancement/state_form/strang/time_advancement.F
90, source/driver/time_dep/Config, source/driver/time_dep/Makefile,
source/driver/time_dep/evolve.F90,
source/driver/time_dep/flash.F90,
source/driver/time_dep/timestep.F90,
source/driver/time_dep/tstep_temperature.F90,
source/driver/time_dep/tstep_temperature_precompute.F90,
source/driver/time_dep/delta_form/Config,
source/driver/time_dep/delta_form/Makefile,
source/driver/time_dep/delta_form/euler1/Config,
source/driver/time_dep/delta_form/euler1/Makefile,
source/driver/time_dep/delta_form/euler1/evolve.F90,
source/driver/time_dep/delta_form/rk3/Config,
source/driver/time_dep/delta_form/rk3/Makefile,
source/driver/time_dep/delta_form/rk3/evolve.F90,
source/driver/time_dep/delta_form/strang_delta/Config,
source/driver/time_dep/delta_form/strang_delta/Makefile,
source/driver/time_dep/delta_form/strang_delta/evolve.F90,
source/driver/time_dep/delta_form/strang_state/Config,
source/driver/time_dep/delta_form/strang_state/Makefile,
source/driver/time_dep/delta_form/strang_state/evolve.F90,
source/driver/x_refinement/Config,
source/driver/x_refinement/Makefile,
source/driver/x_refinement/eos_guards.F90,
source/driver/x_refinement/flash.F90,
source/driver/x_refinement/fluxcorrect.F90,
source/driver/x_refinement/fluxcorrect_data.F90,
source/driver/x_refinement/get_block_coords.F90,
source/driver/x_refinement/globalDriver.F90,
source/driver/x_refinement/init_datasets.F90,
source/driver/x_refinement/init_flash.F90,
source/driver/x_refinement/timestep.F90,
source/driver/x_refinement/tstep_temperature.F90,
source/driver/x_refinement/tstep_temperature_precompute.F90,
source/formulation/Makefile, source/formulation/init_form.F90,
source/formulation/state_form/Config,
source/formulation/state_form/Makefile,
source/formulation/state_form/du_update_block.F90,
source/formulation/state_form/du_update_xface.F90,
source/formulation/state_form/du_update_yface.F90,
source/formulation/state_form/du_update_zface.F90,
source/formulation/state_form/formulation_Module.F90,
source/formulation/state_form/init_form.F90,
source/formulation/state_form/delta_form/Config,
source/formulation/state_form/delta_form/Makefile,
source/formulation/state_form/delta_form/du_update.F90,
source/formulation/state_form/delta_form/formulation_Module.F90,
source/gravity/Config, source/gravity/GravAccelAllBlocks.F90,
source/gravity/GravAccelOneBlock.F90,
source/gravity/GravAccelOneLevel.F90,
source/gravity/GravAccelOneRow.F90,
source/gravity/GravAccelOneZone.F90,
source/gravity/GravPotentialAllBlocks.F90,
source/gravity/GravPotentialOneBlock.F90,
source/gravity/GravPotentialOneLevel.F90,
source/gravity/Gravity.F90, source/gravity/GravityTimestep.F90,
source/gravity/InitGravity.F90, source/gravity/Makefile,
source/gravity/constant/Config,
source/gravity/constant/GravAccelOneRow.F90,
source/gravity/constant/GravAccelOneZone.F90,
source/gravity/constant/Makefile, source/gravity/null/Config,
source/gravity/null/GravAccelOneRow.F90,
source/gravity/null/GravAccelOneZone.F90,
source/gravity/null/Makefile, source/gravity/planepar/Config,
source/gravity/planepar/GravAccelOneRow.F90,
source/gravity/planepar/GravAccelOneZone.F90,
source/gravity/planepar/Makefile, source/gravity/poisson/Config,
source/gravity/poisson/GravAccelAllBlocks.F90,
source/gravity/poisson/GravAccelOneRow.F90,
source/gravity/poisson/GravPotentialAllBlocks.F90,
source/gravity/poisson/InitGravity.F90,
source/gravity/poisson/Makefile,
source/gravity/poisson/fft/Makefile,
source/gravity/poisson/fft/fft_solve_iso.F90,
source/gravity/poisson/fft/fft_solve_per.F90,
source/gravity/poisson/fft/fourn.F90,
source/gravity/poisson/fft/poisson.F90,
source/gravity/poisson/multigrid/Config,
source/gravity/poisson/multigrid/Makefile,
source/gravity/poisson/multipole/Config,
source/gravity/poisson/multipole/InitGravity.F90,
source/gravity/poisson/multipole/Makefile,
source/gravity/ptmass/Config,
source/gravity/ptmass/GravAccelAllBlocks.F90,
source/gravity/ptmass/GravAccelOneRow.F90,
source/gravity/ptmass/Makefile, source/hydro/Config,
source/hydro/Makefile, source/hydro/hydro.F90,
source/hydro/init_hydro.F90, source/hydro/mhd_sweepbegin.F90,
source/hydro/mhd_sweepend.F90, source/hydro/shock_detect.F90,
source/hydro/tstep_diffuse.F90, source/hydro/tstep_hydro.F90,
source/hydro/explicit/Config, source/hydro/explicit/Makefile,
source/hydro/explicit/limiters.F90,
source/hydro/explicit/shock_detect.F90,
source/hydro/explicit/tstep_hydro.F90,
source/hydro/explicit/delta_form/Config,
source/hydro/explicit/delta_form/Makefile,
source/hydro/explicit/delta_form/hydro.F90,
source/hydro/explicit/delta_form/kurganov/Config,
source/hydro/explicit/delta_form/kurganov/Makefile,
source/hydro/explicit/delta_form/kurganov/get_block_coords.F90,
source/hydro/explicit/delta_form/kurganov/hydro.F90,
source/hydro/explicit/delta_form/kurganov/hydro_3d.F90,
source/hydro/explicit/delta_form/kurganov/init_hydro.F90,
source/hydro/explicit/delta_form/kurganov/init_hydro_algo.F90,
source/hydro/explicit/delta_form/kurganov/init_hydro_db.F90,
source/hydro/explicit/delta_form/kurganov/init_hydro_timers.F90,
source/hydro/explicit/delta_form/kurganov/kurganov_block_x.F90,
source/hydro/explicit/delta_form/kurganov/kurganov_block_y.F90,
source/hydro/explicit/delta_form/kurganov/kurganov_block_z.F90,
source/hydro/explicit/delta_form/kurganov/kurganov_line.F90,
source/hydro/explicit/euler_ms/Config,
source/hydro/explicit/euler_ms/kurganov/Config,
source/hydro/explicit/euler_ms/kurganov/Makefile,
source/hydro/explicit/euler_ms/kurganov/central_place.F90,
source/hydro/explicit/euler_ms/kurganov/hydro.F90,
source/hydro/explicit/euler_ms/kurganov/hydro_data.F90,
source/hydro/explicit/euler_ms/kurganov/init_hydro.F90,
source/hydro/explicit/euler_ms/kurganov/kurganov_module.F90,
source/hydro/explicit/euler_ms/ppm/Config,
source/hydro/explicit/euler_ms/ppm/Makefile,
source/hydro/explicit/euler_ms/ppm/PPMData.F90,
source/hydro/explicit/euler_ms/ppm/PPMInit.F90,
source/hydro/explicit/euler_ms/ppm/PPMModule.F90,
source/hydro/explicit/euler_ms/ppm/avisco.F90,
source/hydro/explicit/euler_ms/ppm/central_place.F90,
source/hydro/explicit/euler_ms/ppm/cma_flatten.F90,
source/hydro/explicit/euler_ms/ppm/coeff.F90,
source/hydro/explicit/euler_ms/ppm/detect.F90,
source/hydro/explicit/euler_ms/ppm/diffuse.F90,
source/hydro/explicit/euler_ms/ppm/flaten.F90,
source/hydro/explicit/euler_ms/ppm/force.F90,
source/hydro/explicit/euler_ms/ppm/geom.F90,
source/hydro/explicit/euler_ms/ppm/grdvel.F90,
source/hydro/explicit/euler_ms/ppm/hydro.F90,
source/hydro/explicit/euler_ms/ppm/hydro_1d.F90,
source/hydro/explicit/euler_ms/ppm/hydro_1dModule.F90,
source/hydro/explicit/euler_ms/ppm/interp.F90,
source/hydro/explicit/euler_ms/ppm/intrfc.F90,
source/hydro/explicit/euler_ms/ppm/monot.F90,
source/hydro/explicit/euler_ms/ppm/rieman.F90,
source/hydro/explicit/euler_ms/ppm/riemann_hlle.F90,
source/hydro/explicit/euler_ms/ppm/states.F90,
source/hydro/explicit/euler_ms/ppm/update_soln.F90,
source/hydro/explicit/split/Config,
source/hydro/explicit/split/Makefile,
source/hydro/explicit/split/diffuse.F90,
source/hydro/explicit/split/force.F90,
source/hydro/explicit/split/geom.F90,
source/hydro/explicit/split/hydro.F90,
source/hydro/explicit/split/hydro_1dModule.F90,
source/hydro/explicit/split/hydro_sweep.F90,
source/hydro/explicit/split/update_soln.F90,
source/hydro/explicit/split/ppm/Config,
source/hydro/explicit/split/ppm/Makefile,
source/hydro/explicit/split/ppm/PPMData.F90,
source/hydro/explicit/split/ppm/PPMInit.F90,
source/hydro/explicit/split/ppm/PPMModule.F90,
source/hydro/explicit/split/ppm/avisco.F90,
source/hydro/explicit/split/ppm/cma_flatten.F90,
source/hydro/explicit/split/ppm/coeff.F90,
source/hydro/explicit/split/ppm/detect.F90,
source/hydro/explicit/split/ppm/flaten.F90,
source/hydro/explicit/split/ppm/grdvel.F90,
source/hydro/explicit/split/ppm/hydro_1d.F90,
source/hydro/explicit/split/ppm/hydro_1dModule.F90,
source/hydro/explicit/split/ppm/interp.F90,
source/hydro/explicit/split/ppm/intrfc.F90,
source/hydro/explicit/split/ppm/monot.F90,
source/hydro/explicit/split/ppm/rieman.F90,
source/hydro/explicit/split/ppm/riemann_hlle.F90,
source/hydro/explicit/split/ppm/states.F90,
source/hydro/explicit/split/ppm/diffuse/Config,
source/hydro/explicit/split/ppm/diffuse/Makefile,
source/hydro/explicit/split/ppm/diffuse/diffuse.F90,
source/hydro/explicit/split/ppm/diffuse/species_explicit.F90,
source/hydro/explicit/split/ppm/diffuse/therm_explicit.F90,
source/hydro/explicit/split/ppm/diffuse/tstep_diffuse.F90,
source/hydro/explicit/split/ppm/diffuse/visc_explicit.F90,
source/hydro/explicit/split/ppm-rhd/Config,
source/hydro/explicit/split/ppm-rhd/Makefile,
source/hydro/explicit/split/ppm-rhd/error.c,
source/hydro/explicit/split/ppm-rhd/global.h,
source/hydro/explicit/split/ppm-rhd/grdvel.F90,
source/hydro/explicit/split/ppm-rhd/hydro_1d.F90,
source/hydro/explicit/split/ppm-rhd/hydro_1dModule.F90,
source/hydro/explicit/split/ppm-rhd/param.h,
source/hydro/explicit/split/ppm-rhd/pslopes.c,
source/hydro/explicit/split/ppm-rhd/riemann.c,
source/hydro/explicit/split/ppm-rhd/rphysics.c,
source/hydro/explicit/split/ppm-rhd/tstep_hydro.F90,
source/hydro/explicit/split/ppm-rhd/update_soln.F90,
source/hydro/explicit/split/ppm-rhd/util.c,
source/hydro/explicit/split/ppm-rhd/wrappers.c,
source/hydro/hall_mhd/Config, source/hydro/hall_mhd/Makefile,
source/hydro/hall_mhd/evolve.F90, source/hydro/hall_mhd/hall2d.F90,
source/hydro/hall_mhd/hall2d_data.F90,
source/hydro/hall_mhd/hall2d_init.F90,
source/hydro/hall_mhd/hall2d_tstep.F90,
source/hydro/hall_mhd/init_hydro.F90,
source/hydro/hall_mhd/tstep_hydro.F90, source/hydro/mhd/Config,
source/hydro/mhd/Makefile, source/hydro/mhd/hydro.F90,
source/hydro/mhd/init_hydro.F90, source/hydro/mhd/mhd_3d.F90,
source/hydro/mhd/mhd_add_resistive_fluxes.F90,
source/hydro/mhd/mhd_add_thermal_fluxes.F90,
source/hydro/mhd/mhd_add_viscous_fluxes.F90,
source/hydro/mhd/mhd_data.F90, source/hydro/mhd/mhd_divb.F90,
source/hydro/mhd/mhd_fluxes.F90, source/hydro/mhd/mhd_init.F90,
source/hydro/mhd/mhd_interpolate.F90,
source/hydro/mhd/mhd_sources.F90, source/hydro/mhd/mhd_sweep.F90,
source/hydro/mhd/mhd_sweepbegin.F90,
source/hydro/mhd/mhd_sweepend.F90, source/hydro/mhd/mhd_tstep.F90,
source/hydro/mhd/tstep_hydro.F90,
source/hydro/mhd/alt_driver/Config,
source/hydro/mhd/alt_driver/Makefile,
source/hydro/mhd/alt_driver/central_place.F90,
source/hydro/mhd/alt_driver/hydro.F90,
source/hydro/mhd/alt_driver/mhd_3d.F90,
source/hydro/mhd/alt_driver/mhd_sweep.F90,
source/hydro/mhd/divb_diffuse/Config,
source/hydro/mhd/divb_diffuse/Makefile,
source/hydro/mhd/divb_diffuse/mhd_divb.F90,
source/hydro/mhd/divb_diffuse/mhd_sources.F90,
source/hydro/mhd/divb_diffuse/mhd_sweepbegin.F90,
source/hydro/mhd/divb_project/Config,
source/hydro/mhd/divb_project/Makefile,
source/hydro/mhd/divb_project/mhd_divb.F90,
source/hydro/null/init_hydro.F90,
source/hydro/null/tstep_hydro.F90,
source/hydro/null/update_grid_refinement.F90, source/io/Config,
source/io/Makefile, source/io/checkpoint.F90,
source/io/extrema.F90, source/io/getParticlePlotVars.F90,
source/io/getPlotVars.F90, source/io/get_output_filename.F90,
source/io/getvarlabels.F90,
source/io/init_global_parms_checkpoint.F90, source/io/output.F90,
source/io/output_final.F90, source/io/output_initial.F90,
source/io/plotfile.F90, source/io/user_diag.F90,
source/io/user_var.F90, source/io/wr_integrals.F90,
source/io/amr/Config, source/io/amr/Makefile,
source/io/amr/README.IO, source/io/amr/gidTree.F90,
source/io/amr/chombo/CHOMBO.c, source/io/amr/chombo/Config,
source/io/amr/chombo/Makefile, source/io/amr/chombo/checkpoint.F90,
source/io/amr/chombo/chomboHDF5.c,
source/io/amr/chombo/chomboHDF5.h,
source/io/amr/chombo/chombo_decs.h,
source/io/amr/chombo/plotfile.F90, source/io/amr/hdf4/Config,
source/io/amr/hdf4/Makefile, source/io/amr/hdf4/checkpoint.F90,
source/io/amr/hdf4/plotfile.F90,
source/io/amr/hdf5_parallel/Config,
source/io/amr/hdf5_parallel/Makefile,
source/io/amr/hdf5_parallel/README,
source/io/amr/hdf5_parallel/checkpoint.F90,
source/io/amr/hdf5_parallel/h5_file_interface.c,
source/io/amr/hdf5_parallel/h5_parallel_read.c,
source/io/amr/hdf5_parallel/h5_parallel_write.c,
source/io/amr/hdf5_parallel/h5_parallel_write_single.c,
source/io/amr/hdf5_parallel/hdf5_flash.h,
source/io/amr/hdf5_parallel/init_global_parms_checkpoint.F90,
source/io/amr/hdf5_parallel/plotfile.F90,
source/io/amr/hdf5_serial/Config,
source/io/amr/hdf5_serial/Makefile,
source/io/amr/hdf5_serial/checkpoint.F90,
source/io/amr/hdf5_serial/h5_file_interface.c,
source/io/amr/hdf5_serial/h5_read.c,
source/io/amr/hdf5_serial/h5_write.c,
source/io/amr/hdf5_serial/h5_write_single.c,
source/io/amr/hdf5_serial/hdf5_flash.h,
source/io/amr/hdf5_serial/init_global_parms_checkpoint.F90,
source/io/amr/hdf5_serial/plotfile.F90, source/io/amr/ncmpi/Config,
source/io/amr/ncmpi/Makefile, source/io/amr/ncmpi/checkpoint.F90,
source/io/amr/ncmpi/flash_release.f,
source/io/amr/ncmpi/init_global_parms_checkpoint.F90,
source/io/amr/ncmpi/ncmpi_file_interface.c,
source/io/amr/ncmpi/ncmpi_flash.h,
source/io/amr/ncmpi/ncmpi_parallel_read.c,
source/io/amr/ncmpi/ncmpi_parallel_write.c,
source/io/amr/ncmpi/ncmpi_parallel_write_single.c,
source/io/amr/ncmpi/plotfile.F90, source/io/null/output.F90,
source/io/null/output_final.F90, source/io/null/output_initial.F90,
source/io/null/wr_integrals.F90, source/io/ug/Config,
source/io/ug/Makefile, source/io/ug/hdf5_parallel/Config,
source/io/ug/hdf5_parallel/Makefile,
source/io/ug/hdf5_parallel/README,
source/io/ug/hdf5_parallel/h5_file_interface.c,
source/io/ug/hdf5_parallel/h5_parallel_read.c,
source/io/ug/hdf5_parallel/h5_parallel_write.c,
source/io/ug/hdf5_parallel/h5_parallel_write_single.c,
source/io/ug/hdf5_parallel/hdf5_flash.h,
source/io/ug/hdf5_parallel/uniformGridII/Makefile,
source/io/ug/hdf5_parallel/uniformGridII/checkpoint.F90,
source/io/ug/hdf5_parallel/uniformGridII/gridNumToLeft.c,
source/io/ug/hdf5_parallel/uniformGridII/plotfile.F90,
source/io/ug/hdf5_parallel/uniformGridII/totBlocks.c,
source/materials/Config, source/materials/Makefile,
source/materials/abundance_renorm.F90,
source/materials/abundance_restrict.F90,
source/materials/conductivity.F90, source/materials/eos.F90,
source/materials/eos1d.F90, source/materials/eos3d.F90,
source/materials/init_eos.F90, source/materials/init_mat.F90,
source/materials/multifluid.F90,
source/materials/composition/Config,
source/materials/composition/3-alpha/Config,
source/materials/composition/3-alpha/init_mat.F90,
source/materials/composition/C-O-Mg/Config,
source/materials/composition/C-O-Mg/init_mat.F90,
source/materials/composition/aprox13/Config,
source/materials/composition/aprox13/init_mat.F90,
source/materials/composition/aprox19/Config,
source/materials/composition/aprox19/init_mat.F90,
source/materials/composition/carbon-magnesium/Config,
source/materials/composition/carbon-magnesium/init_mat.F90,
source/materials/composition/carbon-nickel/Config,
source/materials/composition/carbon-nickel/init_mat.F90,
source/materials/composition/fuel+ash/Config,
source/materials/composition/fuel+ash/init_mat.F90,
source/materials/composition/helium-nickel/Config,
source/materials/composition/helium-nickel/init_mat.F90,
source/materials/composition/ioniz/Config,
source/materials/composition/ioniz/Makefile,
source/materials/composition/ioniz/init_mat.F90,
source/materials/composition/ioniz/C+O+Ca+Fe/Config,
source/materials/composition/ioniz/C+O+Ca+Fe/sct_element.F90,
source/materials/composition/ioniz/He/Config,
source/materials/composition/ioniz/He/sct_element.F90,
source/materials/composition/ioniz/O/Config,
source/materials/composition/ioniz/O/sct_element.F90,
source/materials/composition/ioniz/all/Config,
source/materials/composition/ioniz/all/sct_element.F90,
source/materials/composition/iso7/Config,
source/materials/composition/iso7/init_mat.F90,
source/materials/composition/ppcno/Config,
source/materials/composition/ppcno/init_mat.F90,
source/materials/composition/prot+elec/Config,
source/materials/composition/prot+elec/init_mat.F90,
source/materials/conductivity/Config,
source/materials/conductivity/Makefile,
source/materials/conductivity/conductivity.F90,
source/materials/conductivity/constant/Config,
source/materials/conductivity/constant/conductivity.F90,
source/materials/conductivity/constant-diff/Config,
source/materials/conductivity/constant-diff/conductivity.F90,
source/materials/conductivity/spitzer/conductivity.F90,
source/materials/conductivity/stellar/conductivity.F90,
source/materials/eos/Config, source/materials/eos/Makefile,
source/materials/eos/eos.F90, source/materials/eos/eos1d.F90,
source/materials/eos/eos3d.F90, source/materials/eos/init_eos.F90,
source/materials/eos/degenerate/Config,
source/materials/eos/degenerate/Makefile,
source/materials/eos/degenerate/eos.F90,
source/materials/eos/degenerate/eos1d.F90,
source/materials/eos/gamma/Config,
source/materials/eos/gamma/eos.F90,
source/materials/eos/gamma/eos1d.F90,
source/materials/eos/helmholtz/Config,
source/materials/eos/helmholtz/Makefile,
source/materials/eos/helmholtz/const.fh,
source/materials/eos/helmholtz/eos.F90,
source/materials/eos/helmholtz/eos1d.F90,
source/materials/eos/helmholtz/eos3d.F90,
source/materials/eos/helmholtz/helm_table.dat,
source/materials/eos/helmholtz/helmeos.F90,
source/materials/eos/helmholtz/init_eos.F90,
source/materials/eos/helmholtz/tools.c,
source/materials/eos/helmholtz/vector_eos.fh,
source/materials/eos/multigamma/Config,
source/materials/eos/multigamma/eos.F90,
source/materials/eos/multigamma/eos1d.F90,
source/materials/eos/null/eos.F90,
source/materials/eos/null/eos1d.F90,
source/materials/eos/null/eos3d.F90,
source/materials/eos/null/init_eos.F90,
source/materials/eos/perfect_gas+rad/Config,
source/materials/eos/perfect_gas+rad/Makefile,
source/materials/eos/perfect_gas+rad/eos.F90,
source/materials/eos/perfect_gas+rad/eos1d.F90,
source/materials/magnetic_resistivity/Config,
source/materials/magnetic_resistivity/Makefile,
source/materials/magnetic_resistivity/magnetic_resistivity.F90,
source/materials/magnetic_resistivity/magnetic_viscosity.F90,
source/materials/magnetic_resistivity/const/Config,
source/materials/magnetic_resistivity/const/magnetic_resistivity.F9
0,
source/materials/magnetic_resistivity/const/magnetic_viscosity.F90,
source/materials/magnetic_resistivity/spitzer/magnetic_resistivity.
F90,
source/materials/magnetic_resistivity/spitzer/magnetic_viscosity.F9
0, source/materials/mass_diffusivity/Config,
source/materials/mass_diffusivity/Makefile,
source/materials/mass_diffusivity/constant/Config,
source/materials/mass_diffusivity/constant/mass_diffusivity.F90,
source/materials/viscosity/Config,
source/materials/viscosity/Makefile,
source/materials/viscosity/viscosity.F90,
source/materials/viscosity/constant/Config,
source/materials/viscosity/constant/viscosity.F90,
source/materials/viscosity/spitzer/viscosity.F90,
source/mesh/Config, source/mesh/Makefile, source/mesh/grid.F90,
source/mesh/init_block.F90, source/mesh/init_mesh.F90,
source/mesh/init_parallel.F90, source/mesh/restrict_tree.F90,
source/mesh/amr/Config, source/mesh/amr/Makefile,
source/mesh/amr/MarkRefLib.F90, source/mesh/amr/batchsend.F90,
source/mesh/amr/batchsend_dbl.F90,
source/mesh/amr/create_block.F90,
source/mesh/amr/divide_domain.F90,
source/mesh/amr/find_neighbors.F90, source/mesh/amr/init_mesh.F90,
source/mesh/amr/mark_grid_refinement.F90,
source/mesh/amr/update_grid_refinement.F90,
source/mesh/amr/paramesh2.0/Config,
source/mesh/amr/paramesh2.0/Makefile,
source/mesh/amr/paramesh2.0/amr_bc_set.F90,
source/mesh/amr/paramesh2.0/amr_bsort.F90,
source/mesh/amr/paramesh2.0/amr_close.F90,
source/mesh/amr/paramesh2.0/amr_cp_loc.F90,
source/mesh/amr/paramesh2.0/amr_cp_remote.F90,
source/mesh/amr/paramesh2.0/amr_derefine_blocks.F90,
source/mesh/amr/paramesh2.0/amr_diagonal_patch.F90,
source/mesh/amr/paramesh2.0/amr_edge_average.F90,
source/mesh/amr/paramesh2.0/amr_edge_average_udt.F90,
source/mesh/amr/paramesh2.0/amr_edge_average_vdt.F90,
source/mesh/amr/paramesh2.0/amr_edge_diagonal_check.F90,
source/mesh/amr/paramesh2.0/amr_empty_grid_blocks.F90,
source/mesh/amr/paramesh2.0/amr_face_cp_loc.F90,
source/mesh/amr/paramesh2.0/amr_face_cp_remote.F90,
source/mesh/amr/paramesh2.0/amr_flux_conserve.F90,
source/mesh/amr/paramesh2.0/amr_flux_conserve_udt.F90,
source/mesh/amr/paramesh2.0/amr_flux_conserve_vdt.F90,
source/mesh/amr/paramesh2.0/amr_guardcell.F90,
source/mesh/amr/paramesh2.0/amr_guardcell_c_to_f.F90,
source/mesh/amr/paramesh2.0/amr_guardcell_cc_c_to_f.F90,
source/mesh/amr/paramesh2.0/amr_guardcell_cc_srl.F90,
source/mesh/amr/paramesh2.0/amr_guardcell_fc_c_to_f.F90,
source/mesh/amr/paramesh2.0/amr_guardcell_fc_srl.F90,
source/mesh/amr/paramesh2.0/amr_guardcell_srl.F90,
source/mesh/amr/paramesh2.0/amr_initialize.F90,
source/mesh/amr/paramesh2.0/amr_mark_edges.F90,
source/mesh/amr/paramesh2.0/amr_morton.F90,
source/mesh/amr/paramesh2.0/amr_prolong.F90,
source/mesh/amr/paramesh2.0/amr_prolong_cc.F90,
source/mesh/amr/paramesh2.0/amr_prolong_cc_fun_init.F90,
source/mesh/amr/paramesh2.0/amr_prolong_face_fun.F90,
source/mesh/amr/paramesh2.0/amr_prolong_face_fun_init.F90,
source/mesh/amr/paramesh2.0/amr_prolong_fc.F90,
source/mesh/amr/paramesh2.0/amr_prolong_fc_divbconsist.F90,
source/mesh/amr/paramesh2.0/amr_prolong_fun_init.F90,
source/mesh/amr/paramesh2.0/amr_prolong_gen_face_fun.F90,
source/mesh/amr/paramesh2.0/amr_redist_blk.F90,
source/mesh/amr/paramesh2.0/amr_refine_blocks.F90,
source/mesh/amr/paramesh2.0/amr_refine_derefine.F90,
source/mesh/amr/paramesh2.0/amr_restrict.F90,
source/mesh/amr/paramesh2.0/amr_restrict_bnd_data.F90,
source/mesh/amr/paramesh2.0/amr_restrict_cc.F90,
source/mesh/amr/paramesh2.0/amr_restrict_eblock_marker.F90,
source/mesh/amr/paramesh2.0/amr_restrict_edge.F90,
source/mesh/amr/paramesh2.0/amr_restrict_edge_data.F90,
source/mesh/amr/paramesh2.0/amr_restrict_fc.F90,
source/mesh/amr/paramesh2.0/amr_restrict_fc_fun.F90,
source/mesh/amr/paramesh2.0/amr_restrict_red.F90,
source/mesh/amr/paramesh2.0/amr_restrict_unk_fun.F90,
source/mesh/amr/paramesh2.0/amr_restrict_unk_fun_recip.F90,
source/mesh/amr/paramesh2.0/amr_restrict_work_fun.F90,
source/mesh/amr/paramesh2.0/amr_restrict_work_fun_recip.F90,
source/mesh/amr/paramesh2.0/amr_shmem_lib_1proc.F90,
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source/mesh/amr/paramesh3.x/mpi_source/mpi_amr_prolong_fc_divbconsi
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,
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source/mesh/amr/paramesh3.x/mpi_source/mpi_set_message_limits_unpac
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source/mesh/amr/paramesh3.x/source/sed_cmd_v2_to_v3,
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source/mesh/amr/paramesh3.x/source/work.pcl,
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source/mesh/solvers/multigrid_old/mg_guardcell.F90,
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source/mesh/solvers/multigrid_old/mg_init_src.F90,
source/mesh/solvers/multigrid_old/mg_norm.F90,
source/mesh/solvers/multigrid_old/mg_precond.F90,
source/mesh/solvers/multigrid_old/mg_prolong.F90,
source/mesh/solvers/multigrid_old/mg_restrict.F90,
source/mesh/solvers/multigrid_old/mg_set_ext_bndry.F90,
source/mesh/solvers/multigrid_old/mg_write.F90,
source/mesh/solvers/multigrid_old/mg_zero.F90,
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source/mesh/ug/uniformGrid/mesh_interface.F90,
source/mesh/ug/uniformGrid/physicaldata.F90,
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source/mesh/ug/uniformGrid/ug_CalculateBlockArrays.F90,
source/mesh/ug/uniformGrid/ug_CalculateBlockNum.F90,
source/mesh/ug/uniformGrid/ug_CalculateNeighbors.F90,
source/mesh/ug/uniformGrid/ug_CalculateProcNum.F90,
source/mesh/ug/uniformGrid/ug_CreateGrid.F90,
source/mesh/ug/uniformGrid/ug_CreateGridDecomp.F90,
source/mesh/ug/uniformGrid/ug_CreateTopology.c,
source/mesh/ug/uniformGrid/ug_GridStructure.F90,
source/mesh/ug/uniformGrid/ug_PreProcessor.F90,
source/mesh/ug/uniformGrid/ug_guardcell.F90,
source/mesh/ug/uniformGrid/ug_guardcellLocalGlobal.F90,
source/mesh/ug/uniformGrid/ug_guardcellLocalGlobalCorners.F90,
source/mesh/ug/uniformGrid/ug_guardcellLocalGlobalEdges.F90,
source/mesh/ug/uniformGrid/ug_guardcellLocalGlobalFaces.F90,
source/mesh/ug/uniformGrid/ug_guardcellRemoteGlobal.F90,
source/mesh/ug/uniformGrid/ug_guardcellRemoteGlobalCorners.F90,
source/mesh/ug/uniformGrid/ug_guardcellRemoteGlobalEdges.F90,
source/mesh/ug/uniformGrid/ug_guardcellRemoteGlobalFaces.F90,
source/mesh/ug/uniformGrid/ug_initialize.F90,
source/mesh/ug/uniformGridII/BlockDef.c,
source/mesh/ug/uniformGridII/GridDecomp.c,
source/mesh/ug/uniformGridII/Makefile,
source/mesh/ug/uniformGridII/Notes,
source/mesh/ug/uniformGridII/WrapperPhysicalData.F90,
source/mesh/ug/uniformGridII/allocArrays.c,
source/mesh/ug/uniformGridII/calculateNeighborBlockNum.c,
source/mesh/ug/uniformGridII/calculateNeighborProc.c,
source/mesh/ug/uniformGridII/calculateNumToLeft.c,
source/mesh/ug/uniformGridII/createBlockCoordinates.c,
source/mesh/ug/uniformGridII/createBlockDecomp.c,
source/mesh/ug/uniformGridII/createBlockNeighbors.c,
source/mesh/ug/uniformGridII/createGridCoords.c,
source/mesh/ug/uniformGridII/createMpiTypes.c,
source/mesh/ug/uniformGridII/createTopology.c,
source/mesh/ug/uniformGridII/decomposeNumProcs.c,
source/mesh/ug/uniformGridII/finalize.c,
source/mesh/ug/uniformGridII/grid.h,
source/mesh/ug/uniformGridII/grid_defines.h,
source/mesh/ug/uniformGridII/grid_types.h,
source/mesh/ug/uniformGridII/guardcellFill.c,
source/mesh/ug/uniformGridII/guardcellFillLocal.c,
source/mesh/ug/uniformGridII/guardcellFillRemote.c,
source/mesh/ug/uniformGridII/initBoundaryConditions.c,
source/mesh/ug/uniformGridII/initGrid.c,
source/mesh/ug/uniformGridII/initLocalBlocks.c,
source/mesh/ug/uniformGridII/initialize.c,
source/mesh/ug/uniformGridII/mesh_interface.F90,
source/mesh/ug/uniformGridII/printGrid.c,
source/mesh/ug/uniformGridII/printLocalBlocks.c,
source/mesh/ug/uniformGridII/printSolnData.c,
source/mesh/ug/uniformGridII/routines.h,
source/mesh/ug/uniformGridII/tot_bnd.F90,
source/mesh/ug/uniformGridII/user_bnd.F90,
source/mesh/ug/uniformGridII/unitTest/Makefile,
source/mesh/ug/uniformGridII/unitTest/Makefile.sgi,
source/mesh/ug/uniformGridII/unitTest/initSolnData.c,
source/mesh/ug/uniformGridII/unitTest/initialize.c,
source/mesh/ug/uniformGridII/unitTest/prepTest.sh,
source/mesh/ug/uniformGridII/unitTest/runTests.sh,
source/particles/Config,
source/particles/InitParticlePositions.F90,
source/particles/InitParticles.F90, source/particles/Makefile,
source/particles/ParticleData.F90,
source/particles/ParticleModule.F90,
source/particles/ParticleTimestep.F90,
source/particles/active/AdvanceParticles.F90,
source/particles/active/Config,
source/particles/active/LongRangeForce.F90,
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source/particles/active/ShortRangeForce.F90,
source/particles/active/long_range/Config,
source/particles/active/long_range/pm/Config,
source/particles/active/long_range/pm/gravity/Config,
source/particles/active/long_range/pm/gravity/LongRangeForce.F90,
source/particles/active/long_range/pm/gravity/Makefile,
source/particles/active/short_range/Config,
source/particles/active/time_integration/Config,
source/particles/active/time_integration/euler/AdvanceParticles.F90
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source/particles/active/time_integration/euler/Makefile,
source/particles/active/time_integration/leapfrog/AdvanceParticles.
F90, source/particles/active/time_integration/leapfrog/Config,
source/particles/active/time_integration/leapfrog/Makefile,
source/particles/active/time_integration/leapfrog_cosmo/AdvancePart
icles.F90,
source/particles/active/time_integration/leapfrog_cosmo/Config,
source/particles/active/time_integration/leapfrog_cosmo/Makefile,
source/particles/communication/CommunicateGlobalTreeData.F90,
source/particles/communication/Makefile,
source/particles/communication/MoveParticles.F90,
source/particles/communication/ParticleBoundaries.F90,
source/particles/communication/ParticleComm.F90,
source/particles/communication/ParticleCommData.F90,
source/particles/communication/ParticleMeshInfo.F90,
source/particles/communication/ParticlesInitCommunicate.F90,
source/particles/communication/ReDistributeParticles.F90,
source/particles/communication/ReStuffArray.F90,
source/particles/communication/SetupMoveParticles.F90,
source/particles/mapping/AssignWeights.F90,
source/particles/mapping/Config, source/particles/mapping/Makefile,
source/particles/mapping/MapMeshToParticles.F90,
source/particles/mapping/MapParticlesToMesh.F90,
source/particles/mapping/MeshToParticle.F90,
source/particles/mapping/ParticleToMesh.F90,
source/particles/mapping/cic/AssignWeights.F90,
source/particles/mapping/cic_1dsph/MeshToParticle.F90,
source/particles/mapping/cic_1dsph/ParticleToMesh.F90,
source/particles/mapping/cic_2dcylaxi/MeshToParticle.F90,
source/particles/mapping/cic_2dcylaxi/ParticleToMesh.F90,
source/particles/mapping/ngp/AssignWeights.F90,
source/particles/mapping/tsc/AssignWeights.F90,
source/particles/null/AdvanceParticles.F90,
source/particles/null/InitParticles.F90,
source/particles/null/MapMeshToParticles.F90,
source/particles/null/MapParticlesToMesh.F90,
source/particles/null/ParticleComm.F90,
source/particles/null/ParticleCommData.F90,
source/particles/null/ParticleTimestep.F90,
source/particles/passive/AdvanceParticles.F90,
source/particles/passive/Config,
source/particles/passive/InitParticlePositions.F90,
source/particles/passive/Makefile, source/radiation/Config,
source/radiation/Makefile, source/radiation/radiationModule.F90,
source/radiation/radiation_diffusion/Config,
source/radiation/radiation_diffusion/Makefile,
source/radiation/radiation_diffusion/amr_diffusion.F90,
source/radiation/radiation_diffusion/fluxlimiter.F,
source/radiation/radiation_diffusion/fluxlimiter_old.F,
source/radiation/radiation_diffusion/radiationModule.F90,
source/radiation/radiation_diffusion/radiation_old.F,
source/radiation/radiation_diffusion/xztrin21.F,
source/radiation/radiation_diffusion/OpalOpacityTables/GN93hz,
source/radiation/radiation_diffusion/OpalOpacityTables/explanation.
ps, source/radiation/radiation_diffusion/OpalOpacityTables/http,
source/radiation/radiation_diffusion/OpalOpacityTables/test.out,
source/radiation/radiation_diffusion/OpalOpacityTables/test_of_xztr
in21.f,
source/radiation/radiation_diffusion/OpalOpacityTables/xcotrin21.F,
source/radiation/radiation_diffusion/OpalOpacityTables/xcotrin21.f,
source/radiation/radiation_diffusion/OpalOpacityTables/xztrin21.f,
source/sites/Aliases, source/sites/Prototypes/Makefile.h.in,
source/sites/Prototypes/README, source/sites/Prototypes/aclocal.m4,
source/sites/Prototypes/configure,
source/sites/Prototypes/configure.in,
source/sites/Prototypes/AIX/MPI_Wtime.F90,
source/sites/Prototypes/AIX/Makefile.h,
source/sites/Prototypes/AIX/Makefile.h.in,
source/sites/Prototypes/IRIX64/Makefile.h,
source/sites/Prototypes/IRIX64/Makefile.h.in,
source/sites/Prototypes/Linux/Makefile.h,
source/sites/Prototypes/Linux/Makefile.h.ifc,
source/sites/Prototypes/Linux/Makefile.h.in,
source/sites/Prototypes/TFLOPS/Makefile.h,
source/sites/Prototypes/TFLOPS/Makefile.h.hdf5_parallel,
source/sites/Prototypes/TFLOPS/Makefile.h.hdf5_serial,
source/sites/Prototypes/TFLOPS/Makefile.h.hdf5v1.4_parallel,
source/sites/Prototypes/TFLOPS/Makefile.h.in,
source/sites/blue.llnl.gov/Makefile.h,
source/sites/blue.llnl.gov/flashrun,
source/sites/blue.llnl.gov/flashrun.readme,
source/sites/bluehorizon.npaci.edu/Makefile.h,
source/sites/bluehorizon.npaci.edu/flashrun,
source/sites/bluehorizon.npaci.edu/flashrun.readme,
source/sites/cetus.asci.uchicago.edu/Makefile.h,
source/sites/cetus.asci.uchicago.edu/Makefile.h-ifc,
source/sites/cetus.asci.uchicago.edu/Makefile.h-pgf,
source/sites/chiba.mcs.anl.gov/Makefile.h,
source/sites/chiba.mcs.anl.gov/flashrun,
source/sites/chiba.mcs.anl.gov/flashrun.readme,
source/sites/copper.ncsa.uiuc.edu/Makefile.h,
source/sites/cplant.ca.sandia.gov/Makefile.h,
source/sites/cube.asci.uchicago.edu/Makefile.h,
source/sites/flashviz.uchicago.edu/Makefile.h,
source/sites/frost.llnl.gov/Makefile.h,
source/sites/frost.llnl.gov/flashrun,
source/sites/frost.llnl.gov/flashrun.readme,
source/sites/gin.asci.uchicago.edu/Makefile.h,
source/sites/gin.asci.uchicago.edu/build.csh,
source/sites/gog.as.arizona.edu/Makefile.h,
source/sites/gps01.llnl.gov/Makefile.h,
source/sites/intel_gin.asci.uchicago.edu/Makefile.h,
source/sites/intel_gin.asci.uchicago.edu/build.csh,
source/sites/janus.sandia.gov/Makefile.h,
source/sites/lahey_gin.asci.uchicago.edu/Makefile.h,
source/sites/lahey_gin.asci.uchicago.edu/build.csh,
source/sites/modi4.ncsa.uiuc.edu/Makefile.h,
source/sites/monsun/Makefile.h,
source/sites/nan.ucolick.org/Makefile.h,
source/sites/nirvana.acl.lanl.gov/Makefile.h,
source/sites/platinum.ncsa.uiuc.edu/Makefile.h,
source/sites/platinum.ncsa.uiuc.edu/Makefile.h.mpich-gm,
source/sites/q.ucolick.org/Makefile.h,
source/sites/q.ucolick.org/mpich.notes,
source/sites/qsc.lanl.gov/Makefile.h,
source/sites/seaborg.nersc.gov/Makefile.h,
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source/sites/spa.rzg.mpg.de/Makefile.h,
source/sites/sphere.uchicago.edu/Makefile.h,
source/sites/sphere.uchicago.edu/Makefile.h.profiling,
source/sites/sphere.uchicago.edu/build.csh,
source/sites/sunspot.uchicago.edu/Makefile.h,
source/sites/thera.asci.uchicago.edu/Makefile.h,
source/sites/titan.ncsa.uiuc.edu/Makefile.h,
source/sites/titan.ncsa.uiuc.edu/Makefile.h.mpich-gm,
source/sites/upsand.ucsc.edu/Makefile.h,
source/sites/wimbley.asci.uchicago.edu/Makefile.h,
source/sites/ziz1.astropa.unipa.it/Makefile.h,
source/sites/zohar.uchicago.edu/Makefile.h, source/solvers/Config,
source/solvers/Makefile, source/solvers/ODE/odepack/Makefile,
source/solvers/ODE/odepack/README,
source/solvers/ODE/odepack/cfode.F90,
source/solvers/ODE/odepack/doc,
source/solvers/ODE/odepack/ewset.F90,
source/solvers/ODE/odepack/intdy.F90,
source/solvers/ODE/odepack/isamax.F90,
source/solvers/ODE/odepack/lsode.F90,
source/solvers/ODE/odepack/prepj.F90,
source/solvers/ODE/odepack/r1mach.F90,
source/solvers/ODE/odepack/saxpy.F90,
source/solvers/ODE/odepack/sdot.F90,
source/solvers/ODE/odepack/sgbfa.F90,
source/solvers/ODE/odepack/sgbsl.F90,
source/solvers/ODE/odepack/sgefa.F90,
source/solvers/ODE/odepack/sgesl.F90,
source/solvers/ODE/odepack/solsy.F90,
source/solvers/ODE/odepack/sscal.F90,
source/solvers/ODE/odepack/stode.F90,
source/solvers/ODE/odepack/test_odepack.F90,
source/solvers/ODE/odepack/vnorm.F90,
source/solvers/ODE/odepack/xerrwv.F90,
source/solvers/ODE/vode/Makefile, source/solvers/ODE/vode/README,
source/solvers/ODE/vode/isamax.F90,
source/solvers/ODE/vode/r1mach.F90,
source/solvers/ODE/vode/saxpy.F90,
source/solvers/ODE/vode/scopy.F90,
source/solvers/ODE/vode/sdot.F90,
source/solvers/ODE/vode/sgbfa.F90,
source/solvers/ODE/vode/sgbsl.F90,
source/solvers/ODE/vode/sgefa.F90,
source/solvers/ODE/vode/sgesl.F90,
source/solvers/ODE/vode/sscal.F90,
source/solvers/ODE/vode/svode.F90,
source/solvers/helmholtz/Makefile,
source/solvers/helmholtz/multigrid/Config,
source/solvers/helmholtz/multigrid/Makefile,
source/solvers/helmholtz/multigrid/helmholtz.F90,
source/solvers/helmholtz/multigrid/helmholtz_mg_relax.F90,
source/solvers/helmholtz/multigrid/helmholtz_mg_residual.F90,
source/solvers/helmholtz/multigrid/helmholtz_mg_solve.F90,
source/solvers/helmholtz/multigrid/helmholtz_private.F90,
source/solvers/linalg/ma28/sparse_ma28.F90,
source/solvers/poisson/Config, source/solvers/poisson/Makefile,
source/solvers/poisson/poisson.F90,
source/solvers/poisson/hypre_PFMG/Config,
source/solvers/poisson/hypre_PFMG/Makefile,
source/solvers/poisson/hypre_PFMG/hypre_wrapper.c,
source/solvers/poisson/hypre_PFMG/poisson.F90,
source/solvers/poisson/hypre_PFMG/poisson.c,
source/solvers/poisson/multigrid/Config,
source/solvers/poisson/multigrid/Makefile,
source/solvers/poisson/multigrid/poisson.F90,
source/solvers/poisson/multigrid/poisson_image_boundary.F90,
source/solvers/poisson/multigrid/poisson_image_mass.F90,
source/solvers/poisson/multigrid/poisson_mg_relax.F90,
source/solvers/poisson/multigrid/poisson_mg_residual.F90,
source/solvers/poisson/multigrid/poisson_mg_solve.F90,
source/solvers/poisson/multigrid/fftcg/Makefile,
source/solvers/poisson/multigrid/fftcg/fftsg.f,
source/solvers/poisson/multigrid/fftcg/fftsg2d.f,
source/solvers/poisson/multigrid/fftcg/fftsg3d.f,
source/solvers/poisson/multigrid/fftcg/pois_solve_1d.f90,
source/solvers/poisson/multigrid/fftcg/pois_solve_2d.f90,
source/solvers/poisson/multigrid/fftcg/pois_solve_3d.f90,
source/solvers/poisson/multigrid/fftcg/poisson_mg_solve.F90,
source/solvers/poisson/multigrid/isobnd_mpole/Config,
source/solvers/poisson/multigrid/isobnd_mpole/Makefile,
source/solvers/poisson/multigrid/isobnd_mpole/compute_mpole_moments
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source/solvers/poisson/multigrid/isobnd_mpole/compute_mpole_potenti
al.F90,
source/solvers/poisson/multigrid/isobnd_mpole/find_center_of_mass.F
90, source/solvers/poisson/multigrid/isobnd_mpole/init_mpole.F90,
source/solvers/poisson/multigrid/isobnd_mpole/mpole_common.F90,
source/solvers/poisson/multigrid/isobnd_mpole/poisson_image_boundar
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source/solvers/poisson/multigrid/isobnd_mpole/zone_moments.F90,
source/solvers/poisson/multigrid/isobnd_mpole/zone_potential.F90,
source/solvers/poisson/multigrid/isobnd_mpole_opt/Config,
source/solvers/poisson/multigrid/isobnd_mpole_opt/Makefile,
source/solvers/poisson/multigrid/isobnd_mpole_opt/compute_mpole_mom
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source/solvers/poisson/multigrid/isobnd_mpole_opt/compute_mpole_pot
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source/solvers/poisson/multigrid/isobnd_mpole_opt/find_center_of_ma
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source/solvers/poisson/multigrid/isobnd_mpole_opt/init_mpole.F90,
source/solvers/poisson/multigrid/isobnd_mpole_opt/mpole_common.F90,
source/solvers/poisson/multigrid/isobnd_mpole_opt/poisson_image_bou
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source/solvers/poisson/multigrid/isobnd_mpole_opt/zone_moments.F90,
source/solvers/poisson/multigrid/isobnd_mpole_opt/zone_potential.F9
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source/solvers/poisson/multigrid_old/Makefile,
source/solvers/poisson/multigrid_old/poisson.F90,
source/solvers/poisson/multigrid_old/poisson_image_boundary.F90,
source/solvers/poisson/multigrid_old/poisson_image_mass.F90,
source/solvers/poisson/multigrid_old/poisson_mg_relax.F90,
source/solvers/poisson/multigrid_old/poisson_mg_residual.F90,
source/solvers/poisson/multigrid_old/poisson_mg_solve.F90,
source/solvers/poisson/multigrid_old/fftcg/Makefile,
source/solvers/poisson/multigrid_old/fftcg/fftsg.f,
source/solvers/poisson/multigrid_old/fftcg/fftsg2d.f,
source/solvers/poisson/multigrid_old/fftcg/fftsg3d.f,
source/solvers/poisson/multigrid_old/fftcg/pois_solve_1d.f90,
source/solvers/poisson/multigrid_old/fftcg/pois_solve_2d.f90,
source/solvers/poisson/multigrid_old/fftcg/pois_solve_3d.f90,
source/solvers/poisson/multigrid_old/fftcg/poisson_mg_solve.F90,
source/solvers/poisson/multigrid_old/isobnd_mpole/Config,
source/solvers/poisson/multigrid_old/isobnd_mpole/Makefile,
source/solvers/poisson/multigrid_old/isobnd_mpole/compute_mpole_mom
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source/solvers/poisson/multigrid_old/isobnd_mpole/compute_mpole_pot
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source/solvers/poisson/multigrid_old/isobnd_mpole/find_center_of_ma
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source/solvers/poisson/multigrid_old/isobnd_mpole/init_mpole.F90,
source/solvers/poisson/multigrid_old/isobnd_mpole/mpole_common.F90,
source/solvers/poisson/multigrid_old/isobnd_mpole/poisson_image_bou
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source/solvers/poisson/multigrid_old/isobnd_mpole/zone_moments.F90,
source/solvers/poisson/multigrid_old/isobnd_mpole/zone_potential.F9
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source/solvers/poisson/multigrid_old/isobnd_mpole_opt/Makefile,
source/solvers/poisson/multigrid_old/isobnd_mpole_opt/compute_mpole
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source/solvers/poisson/multigrid_old/isobnd_mpole_opt/compute_mpole
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source/solvers/poisson/multigrid_old/isobnd_mpole_opt/find_center_o
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source/solvers/poisson/multigrid_old/isobnd_mpole_opt/init_mpole.F9
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source/solvers/poisson/multigrid_old/isobnd_mpole_opt/mpole_common.
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source/solvers/poisson/multigrid_old/isobnd_mpole_opt/poisson_image
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source/solvers/poisson/multigrid_old/isobnd_mpole_opt/zone_moments.
F90,
source/solvers/poisson/multigrid_old/isobnd_mpole_opt/zone_potentia
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source/solvers/poisson/multipole/Makefile,
source/solvers/poisson/multipole/compute_mpole_moments.F90,
source/solvers/poisson/multipole/compute_mpole_potential.F90,
source/solvers/poisson/multipole/find_center_of_mass.F90,
source/solvers/poisson/multipole/init_mpole.F90,
source/solvers/poisson/multipole/mpole_common.F90,
source/solvers/poisson/multipole/poisson.F90,
source/solvers/poisson/multipole/zone_moments.F90,
source/solvers/poisson/multipole/zone_potential.F90,
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source/source_terms/init_cool.F90,
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source/source_terms/init_ioniz.F90,
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source/source_terms/tstep_heat.F90,
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source/source_terms/burn/eos_common.fh,
source/source_terms/burn/gift.F90,
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source/source_terms/burn/net.F90,
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source/source_terms/burn/3-alpha/net.F90,
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source/source_terms/burn_nse/burn.F90,
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source/source_terms/cool/isothermal/Config,
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source/source_terms/cool/sutherland_dopita/data/pk6ff75m-20.neq,
source/source_terms/cool/sutherland_dopita/data/pk6ff75m-30.neq,
source/source_terms/cool/sutherland_dopita/data/pk6ff75zero.neq,
source/source_terms/cool/sutherland_dopita/data/pk6ff85.neq,
source/source_terms/cool/sutherland_dopita/data/pk6zf55.neq,
source/source_terms/cool/sutherland_dopita/data/pk6zf65.neq,
source/source_terms/cool/sutherland_dopita/data/pk6zf75.neq,
source/source_terms/cool/sutherland_dopita/data/pk6zf75m-05.neq,
source/source_terms/cool/sutherland_dopita/data/pk6zf75m-10.neq,
source/source_terms/cool/sutherland_dopita/data/pk6zf75m-15.neq,
source/source_terms/cool/sutherland_dopita/data/pk6zf75m-20.neq,
source/source_terms/cool/sutherland_dopita/data/pk6zf75m-30.neq,
source/source_terms/cool/sutherland_dopita/data/pk6zf75zero.neq,
source/source_terms/cool/sutherland_dopita/data/pk6zf85.neq,
source/source_terms/heat/Config,
source/source_terms/heat/stat+gauss/Config,
source/source_terms/heat/stat+gauss/Makefile,
source/source_terms/heat/stat+gauss/heat.F90,
source/source_terms/heat/stat+gauss/heat_block.F90,
source/source_terms/heat/stat+gauss/init_heat.F90,
source/source_terms/ioniz/Config,
source/source_terms/ioniz/Makefile,
source/source_terms/ioniz/cfnei_common.fh,
source/source_terms/ioniz/implno.fh,
source/source_terms/ioniz/init_ioniz.F90,
source/source_terms/ioniz/ioniz.F90,
source/source_terms/ioniz/ioniz_block.F90,
source/source_terms/ioniz/nei_auxiliary.F90,
source/source_terms/ioniz/nei_common.fh,
source/source_terms/ioniz/nei_integrate.F90,
source/source_terms/ioniz/nei_size.fh,
source/source_terms/ioniz/summers_den_1e8.rates,
source/source_terms/ioniz/eqi/Config,
source/source_terms/ioniz/eqi/nei.F90,
source/source_terms/ioniz/nei/Config,
source/source_terms/ioniz/nei/nei.F90,
source/source_terms/null/source_terms.F90,
source/source_terms/stirring/Config,
source/source_terms/stirring/Makefile,
source/source_terms/stirring/OUnoise.c,
source/source_terms/stirring/OUnoise.h,
source/source_terms/stirring/calc_accel.F90,
source/source_terms/stirring/calc_phases.F90,
source/source_terms/stirring/common-stir.fh,
source/source_terms/stirring/stir.F90, source/util/Makefile,
source/util/front_tracking/Config,
source/util/front_tracking/Makefile,
source/util/front_tracking/front_tracking.F90,
source/util/front_tracking/rhjump.F90,
source/util/front_tracking/track_block.F90,
source/util/initialization/1d/Config,
source/util/initialization/1d/Makefile,
source/util/initialization/1d/init_1d.F90,
source/util/initialization/hse/Config,
source/util/initialization/hse/Makefile,
source/util/initialization/hse/init_1d.F90,
source/util/initialization/isothermal_atm/Config,
source/util/initialization/isothermal_atm/Makefile,
source/util/initialization/isothermal_atm/init_1d.F90,
source/util/initialization/isothermal_fuel+ash_atm/Config,
source/util/initialization/isothermal_fuel+ash_atm/Makefile,
source/util/initialization/isothermal_fuel+ash_atm/init_1d.F90,
source/util/interp/Makefile, source/util/interp/fndpos.F90,
source/util/interp/hunt.F90, source/util/interp/polynomial/Config,
source/util/interp/polynomial/Makefile,
source/util/interp/polynomial/mipcub.F90,
source/util/interp/polynomial/polint.F90,
source/util/mappers/Makefile, source/util/mappers/datasets.F90,
source/util/mappers/dsetdbase.F90,
source/util/mappers/map001to001.F90,
source/util/mappers/map001to003.F90,
source/util/mappers/map002to002.F90,
source/util/mappers/map002to004.F90,
source/util/mappers/map003to001.F90,
source/util/mappers/map003to003.F90,
source/util/mappers/map004to002.F90,
source/util/mappers/map004to004.F90,
source/util/mappers/map004to005.F90,
source/util/mappers/map004to006.F90,
source/util/mappers/map006to004.F90,
source/util/mappers/map006to006.F90,
source/util/mappers/mappers.F90, source/util/perturb/Makefile,
source/util/perturb/perturbLib.F90, source/util/tools/Makefile,
source/util/tools/current_date_time.F90,
source/util/tools/get_argument.F90, source/util/tools/get_opt.F90,
source/util/tools/logfile.F90, source/util/tools/memory_report.F90,
source/util/tools/memory_usage.c, source/util/tools/perfmon.F90,
source/util/tools/profiling.F90,
source/util/tools/string_tools.F90, source/util/tools/PAPI/Config,
source/util/tools/PAPI/Makefile,
source/util/tools/PAPI/perfmon.F90,
source/util/tools/profiling/Config,
source/util/tools/profiling/hpm_ibm/Config,
source/util/tools/profiling/hpm_ibm/profiling.F90,
source/util/tools/profiling/mpe/Config,
source/util/tools/profiling/mpe/profiling.F90,
source/util/tools/profiling/vampir/Config,
source/util/tools/profiling/vampir/profiling.F90,
source/util/wrapping/APItest.c, source/util/wrapping/Makefile,
source/util/wrapping/int-mode.el, source/util/wrapping/int2API.py,
source/visualization/Config, source/visualization/Makefile,
source/visualization/imgserv.py,
source/visualization/visualization.F90,
source/visualization/native/Config,
source/visualization/native/Makefile,
source/visualization/native/colortables.h,
source/visualization/native/helpers.int,
source/visualization/native/readtbl.py,
source/visualization/native/visualization.c,
source/visualization/scripted/Config,
source/visualization/scripted/Makefile,
source/visualization/scripted/README,
source/visualization/scripted/render.c,
source/visualization/scripted/visLib.py,
source/visualization/scripted/visScript.py,
source/visualization/scripted/visualization.F90,
source/visualization/scripted/vtkFlashUnstructuredGridSource.cxx,
source/visualization/scripted/vtkFlashUnstructuredGridSource.h,
source/visualization/scripted/vtkMPIController.patch,
tools/fidlr2/Makefile.aix, tools/fidlr2/Makefile.linux,
tools/fidlr2/Makefile.sgi, tools/fidlr2/Makefile.solaris,
tools/fidlr2/README, tools/fidlr2/add_var.pro,
tools/fidlr2/color.pro, tools/fidlr2/color_bitmap.pro,
tools/fidlr2/color_gif.pro, tools/fidlr2/color_index.pro,
tools/fidlr2/colorbar2.pro, tools/fidlr2/compare.pro,
tools/fidlr2/courant.pro, tools/fidlr2/create_variable.pro,
tools/fidlr2/data_browse.pro, tools/fidlr2/determine_file_type.pro,
tools/fidlr2/draw_blocks.pro, tools/fidlr2/extract_line.pro,
tools/fidlr2/fhdf_read.pro, tools/fidlr2/file_information.pro,
tools/fidlr2/flame_profile_1d.pro, tools/fidlr2/flame_speed.pro,
tools/fidlr2/flash_colors.tbl, tools/fidlr2/get_dat_vars.pro,
tools/fidlr2/get_dimensionality.pro,
tools/fidlr2/get_particle_number.pro,
tools/fidlr2/get_var_list.pro, tools/fidlr2/get_xflash_path.pro,
tools/fidlr2/h5_file_interface.c, tools/fidlr2/h5_read.c,
tools/fidlr2/h5_wrappers.c, tools/fidlr2/hdf5_idl_interface.h,
tools/fidlr2/hist.pro, tools/fidlr2/hist_driver.pro,
tools/fidlr2/loaddata.pro, tools/fidlr2/merge_amr.pro,
tools/fidlr2/mysmooth.pro, tools/fidlr2/nolabel.pro,
tools/fidlr2/openflashfile.pro, tools/fidlr2/partvelvec.pro,
tools/fidlr2/plot_dat.pro, tools/fidlr2/plotstate.pro,
tools/fidlr2/plotvar.pro, tools/fidlr2/query.pro,
tools/fidlr2/radial.pro, tools/fidlr2/radial_average.pro,
tools/fidlr2/radial_average_polar.pro, tools/fidlr2/read_amr.pro,
tools/fidlr2/read_amr_hdf5.pro, tools/fidlr2/readtab.pro,
tools/fidlr2/scale3d_amr.pro, tools/fidlr2/scale_color.pro,
tools/fidlr2/sci_notat.pro, tools/fidlr2/start.pro,
tools/fidlr2/start_linux.pro, tools/fidlr2/tvimage.pro,
tools/fidlr2/undefine.pro, tools/fidlr2/var_index.pro,
tools/fidlr2/vcolorbar.pro, tools/fidlr2/xcontour.pro,
tools/fidlr2/xfile_info.pro, tools/fidlr2/xflash.pro,
tools/fidlr2/xflash_defaults.pro, tools/fidlr2/xhist.pro,
tools/fidlr2/xparticle.pro, tools/fidlr2/xplot1d_amr_new.pro,
tools/fidlr2/xplot3d_amr_new.pro, tools/fidlr2/xplot_amr_new.pro,
tools/fidlr2/xvector.pro, tools/flash2chombo/CHOMBO.c,
tools/flash2chombo/Makefile, tools/flash2chombo/Makefile.lahey,
tools/flash2chombo/README, tools/flash2chombo/chomboHDF5.c,
tools/flash2chombo/chomboHDF5.h, tools/flash2chombo/chombo_decs.h,
tools/flash2chombo/flash2chombo.F90,
tools/flash2chombo/h4_file_interface.F90,
tools/flash2chombo/h4_read.F90,
tools/flash2chombo/h5_file_interface.c,
tools/flash2chombo/h5_read.c, tools/flash2chombo/hdf5_flash.h,
tools/flash2chombo/hdf_wrappers.F90,
tools/flash2chombo/mangle_names.h, tools/flash2tec/Makefile,
tools/flash2tec/flash2tec.c, tools/fofi/Makefile.irix,
tools/fofi/Makefile.linux, tools/fofi/fofi.c, tools/fofi/fofi.h,
tools/fui/Readme, tools/fui/globus_make,
tools/fui/bin/G_FlashTools, tools/fui/bin/G_FlashTools_help,
tools/fui/bin/G_FlashTools_help.htm,
tools/fui/bin/G_FlashTools_run, tools/fui/bin/astrolib,
tools/fui/bin/fui, tools/fui/bin/fui_do_setup,
tools/fui/bin/fui_help, tools/fui/bin/fui_help.htm,
tools/fui/bin/fui_submit_help, tools/fui/bin/fui_submit_help.htm,
tools/fui/bin/gcancel, tools/fui/bin/gcd, tools/fui/bin/gclean,
tools/fui/bin/gexec, tools/fui/bin/gget, tools/fui/bin/glist-conf,
tools/fui/bin/globus-script-easymcs-qstatus,
tools/fui/bin/globus-script-fork-qstatus,
tools/fui/bin/globus-script-lsf-qstatus,
tools/fui/bin/globus-script-pbs-qstatus,
tools/fui/bin/globus-script-t3e-nqe-qstatus, tools/fui/bin/gls,
tools/fui/bin/gmkdir, tools/fui/bin/gmonitor,
tools/fui/bin/gpoststage, tools/fui/bin/gprestage,
tools/fui/bin/gprsetup, tools/fui/bin/gps, tools/fui/bin/gput,
tools/fui/bin/gpwd, tools/fui/bin/grm, tools/fui/bin/grmdir,
tools/fui/bin/grun, tools/fui/bin/gscanall, tools/fui/bin/gsearch,
tools/fui/bin/gsetup, tools/fui/bin/gstatus,
tools/fui/bin/gwait_and_check, tools/fui/bin/gxterm,
tools/fui/bin/run_it,
tools/fui/java.src/BuildCommandDialog$BuildButtonEvent.class,
tools/fui/java.src/BuildCommandDialog$CancelButtonEvent.class,
tools/fui/java.src/BuildCommandDialog.class,
tools/fui/java.src/BuildCommandDialog.java,
tools/fui/java.src/BuildExecutable.class,
tools/fui/java.src/BuildExecutable.java,
tools/fui/java.src/ConfigParse.class,
tools/fui/java.src/ConfigParse.java,
tools/fui/java.src/ConfigWrite.class,
tools/fui/java.src/ConfigWrite.java,
tools/fui/java.src/DoSetup.class, tools/fui/java.src/DoSetup.java,
tools/fui/java.src/FileListFilter.class,
tools/fui/java.src/FileListFilter.java,
tools/fui/java.src/Fui$1.class,
tools/fui/java.src/Fui$ExistingProblemEvent.class,
tools/fui/java.src/Fui$ExitButtonEvent.class,
tools/fui/java.src/Fui$NewProblemEvent.class,
tools/fui/java.src/Fui.class, tools/fui/java.src/Fui.java,
tools/fui/java.src/ModulesChange$AddButtonEvent.class,
tools/fui/java.src/ModulesChange$BackButtonEvent.class,
tools/fui/java.src/ModulesChange$DefaultsRBEvent.class,
tools/fui/java.src/ModulesChange$ExitButtonEvent.class,
tools/fui/java.src/ModulesChange$NextButtonEvent.class,
tools/fui/java.src/ModulesChange$RemoveButtonEvent.class,
tools/fui/java.src/ModulesChange.class,
tools/fui/java.src/ModulesChange.java,
tools/fui/java.src/NewProblemParameterDialog$BackButtonEvent.class,
tools/fui/java.src/NewProblemParameterDialog$ExitButtonEvent.class,
tools/fui/java.src/NewProblemParameterDialog$NextButtonEvent.class,
tools/fui/java.src/NewProblemParameterDialog.class,
tools/fui/java.src/NewProblemParameterDialog.java,
tools/fui/java.src/ParametersChange$AddFieldEvent.class,
tools/fui/java.src/ParametersChange$BackButtonEvent.class,
tools/fui/java.src/ParametersChange$ExitButtonEvent.class,
tools/fui/java.src/ParametersChange$NextButtonEvent.class,
tools/fui/java.src/ParametersChange$ParamNameEvent.class,
tools/fui/java.src/ParametersChange.class,
tools/fui/java.src/ParametersChange.java,
tools/fui/java.src/PostDefaultModules.class,
tools/fui/java.src/PostDefaultModules.java,
tools/fui/java.src/ProblemConfigParse.class,
tools/fui/java.src/ProblemConfigParse.java,
tools/fui/java.src/ProblemName$BackButtonEvent.class,
tools/fui/java.src/ProblemName$ExitButtonEvent.class,
tools/fui/java.src/ProblemName$NextButtonEvent.class,
tools/fui/java.src/ProblemName.class,
tools/fui/java.src/ProblemName.java,
tools/fui/java.src/ProblemSelect$EditButtonEvent.class,
tools/fui/java.src/ProblemSelect$ExecuteButtonEvent.class,
tools/fui/java.src/ProblemSelect$ExitButtonEvent.class,
tools/fui/java.src/ProblemSelect.class,
tools/fui/java.src/ProblemSelect.java,
tools/fui/java.src/RequiredFiles.class,
tools/fui/java.src/RequiredFiles.java,
tools/fui/java.src/SetRequiredModules$AddButtonEvent.class,
tools/fui/java.src/SetRequiredModules$BackButtonEvent.class,
tools/fui/java.src/SetRequiredModules$ExitButtonEvent.class,
tools/fui/java.src/SetRequiredModules$NextButtonEvent.class,
tools/fui/java.src/SetRequiredModules$RemoveButtonEvent.class,
tools/fui/java.src/SetRequiredModules.class,
tools/fui/java.src/SetRequiredModules.java,
tools/fui/java.src/SetupFlags$1.class,
tools/fui/java.src/SetupFlags$BuildButtonEvent.class,
tools/fui/java.src/SetupFlags$DefaultsRBEvent.class,
tools/fui/java.src/SetupFlags$ExitButtonEvent.class,
tools/fui/java.src/SetupFlags$MaxBlocksEvent.class,
tools/fui/java.src/SetupFlags$OneDRBEvent.class,
tools/fui/java.src/SetupFlags$PortableRBEvent.class,
tools/fui/java.src/SetupFlags$RunButtonEvent.class,
tools/fui/java.src/SetupFlags$SetupButtonEvent.class,
tools/fui/java.src/SetupFlags$ThreeDRBEvent.class,
tools/fui/java.src/SetupFlags$TwoDRBEvent.class,
tools/fui/java.src/SetupFlags$VerboseRBEvent.class,
tools/fui/java.src/SetupFlags.class,
tools/fui/java.src/SetupFlags.java,
tools/fui/java.src/SwingWorker$1.class,
tools/fui/java.src/SwingWorker$2.class,
tools/fui/java.src/SwingWorker$ThreadVar.class,
tools/fui/java.src/SwingWorker.class,
tools/fui/java.src/SwingWorker.java,
tools/fui/java.src/TemplateSettings.class,
tools/fui/java.src/TemplateSettings.java,
tools/fui/java.src/WriteModulesFile.class,
tools/fui/java.src/WriteModulesFile.java,
tools/fui/java.src/flashLogo.gif, tools/io_bench/Makefile.blue,
tools/io_bench/Makefile.chiba, tools/io_bench/Makefile.linux,
tools/io_bench/Makefile.seaborg, tools/io_bench/Makefile.sphere,
tools/io_bench/README, tools/io_bench/block_boundary_data.fh,
tools/io_bench/checkpoint_hdf5_parallel.F90,
tools/io_bench/common.fh, tools/io_bench/definitions.fh,
tools/io_bench/flash_benchmark_io.F90,
tools/io_bench/flash_release.f,
tools/io_bench/get_mfluid_property.F90,
tools/io_bench/h5_file_interface.c,
tools/io_bench/h5_parallel_write.c,
tools/io_bench/h5_parallel_write_single.c,
tools/io_bench/hdf5_flash.h, tools/io_bench/numfluids.fh,
tools/io_bench/physicaldata.fh,
tools/io_bench/plotfile_hdf5_parallel.F90, tools/io_bench/tree.fh,
tools/scripts/CreateFlashRelease.java, tools/scripts/FlashStack.py,
tools/scripts/fmkmf.pl, tools/scripts/MakeRelease/Code.rl,
tools/scripts/MakeRelease/CopyCode.pl,
tools/scripts/MakeRelease/MakeRelease.pl,
tools/scripts/MakeRelease/MakeTarFile.pl,
tools/scripts/MakeRelease/ParseInfoPartialDirRelease.pl,
tools/scripts/MakeRelease/ParseInput.pl,
tools/scripts/MakeRelease/README,
tools/scripts/MakeRelease/ReadInRLFile.pl,
tools/scripts/MakeRelease/RemoveCVSDirs.pl,
tools/scripts/MakeRelease/ReportRelease.pl,
tools/scripts/MakeRelease/Setups.rl,
tools/scripts/MakeRelease/cvs2cl.pl,
tools/scripts/MakeRelease/printHelp.pl,
tools/scripts/MakeRelease/printUsage.pl,
tools/scripts/MakeRelease/release.pl,
tools/scripts/coding_standards/CodingStandardsTests.py,
tools/scripts/coding_standards/README,
tools/scripts/coding_standards/acc,
tools/scripts/coding_standards/chkCodingStandards.py,
tools/scripts/coding_standards/isFixed.py,
tools/scripts/coding_standards/postCodingStandards.scr,
tools/scripts/coding_standards/html/HTMLgen/Formtools.py,
tools/scripts/coding_standards/html/HTMLgen/GifImagePluginH.py,
tools/scripts/coding_standards/html/HTMLgen/HTML.rc,
tools/scripts/coding_standards/html/HTMLgen/HTMLcalendar.py,
tools/scripts/coding_standards/html/HTMLgen/HTMLcolors.py,
tools/scripts/coding_standards/html/HTMLgen/HTMLgen.py,
tools/scripts/coding_standards/html/HTMLgen/HTMLgen.pyc,
tools/scripts/coding_standards/html/HTMLgen/HTMLgen.rc,
tools/scripts/coding_standards/html/HTMLgen/HTMLtest.py,
tools/scripts/coding_standards/html/HTMLgen/HTMLutil.py,
tools/scripts/coding_standards/html/HTMLgen/ImageFileH.py,
tools/scripts/coding_standards/html/HTMLgen/ImageH.py,
tools/scripts/coding_standards/html/HTMLgen/ImageH.pyc,
tools/scripts/coding_standards/html/HTMLgen/ImagePaletteH.py,
tools/scripts/coding_standards/html/HTMLgen/ImagePaletteH.pyc,
tools/scripts/coding_standards/html/HTMLgen/JpegImagePluginH.py,
tools/scripts/coding_standards/html/HTMLgen/Makefile,
tools/scripts/coding_standards/html/HTMLgen/NavLinks.py,
tools/scripts/coding_standards/html/HTMLgen/PngImagePluginH.py,
tools/scripts/coding_standards/html/HTMLgen/README,
tools/scripts/coding_standards/html/HTMLgen/StickyForm.py,
tools/scripts/coding_standards/html/HTMLgen/appt.txt,
tools/scripts/coding_standards/html/HTMLgen/barchart.py,
tools/scripts/coding_standards/html/HTMLgen/cgiapp.py,
tools/scripts/coding_standards/html/HTMLgen/colorcube.py,
tools/scripts/coding_standards/html/HTMLgen/imgfix.py,
tools/scripts/coding_standards/html/HTMLgen/imgsize.py,
tools/scripts/coding_standards/html/HTMLgen/imgsize.pyc,
tools/scripts/coding_standards/html/HTMLgen/installp.py,
tools/scripts/eos_changes/AddDeclaration.py,
tools/scripts/eos_changes/ChangeEOS.py,
tools/scripts/eos_changes/ChangePrototype.py,
tools/scripts/eos_changes/README,
tools/scripts/eos_changes/add_entropy.csh,
tools/scripts/jobs/blocksVsTime.py, tools/scripts/jobs/restart,
tools/scripts/jobs/tstepVsTime.py,
tools/scripts/robodoc/findRobodocedFiles.py,
tools/scripts/robodoc/makeRobodocDocs.py,
tools/scripts/robodoc/robodocFLASH.sh,
tools/scripts/statistics/codeStats.pl,
tools/scripts/statistics/cvsstats,
tools/scripts/statistics/f_mod_index.pl,
tools/scripts/statistics/postCvsStats.scr,
tools/scripts/testing/find_untested_files.scr,
tools/scripts/testing/list_files.scr,
tools/scripts/testing/check_make/CheckMake,
tools/scripts/testing/check_make/CheckMake.driver.all,
tools/scripts/testing/check_make/CheckMake.pl,
tools/scripts/testing/check_make/F_ModuleDb.pm,
tools/scripts/testing/check_make/MakeEvaluate.pm,
tools/scripts/testing/check_make/MakeReader.pm,
tools/scripts/testing/check_make/README,
tools/scripts/testing/check_make/SourceReader.pm,
tools/scripts/testing/check_make/UPrinter.pm,
tools/scripts/testing/check_make/checkmake.config,
tools/scripts/testing/precision_test/precision_test.F90,
tools/scripts/text_formatting/ConvertSuffixes,
tools/scripts/text_formatting/FFlushLeftComments.class,
tools/scripts/text_formatting/FFlushLeftComments.java,
tools/scripts/text_formatting/convert.f90,
tools/scripts/text_formatting/convert.pl,
tools/scripts/text_formatting/findLine,
tools/scripts/text_formatting/fixFComments.driver,
tools/scripts/text_formatting/fixFComments.pm,
tools/scripts/text_formatting/ftof90.c,
tools/scripts/text_formatting/ftof90.py,
tools/scripts/text_formatting/ftof90.scr,
tools/sfocu/Makefile.bluehorizon, tools/sfocu/Makefile.chiba,
tools/sfocu/Makefile.cube, tools/sfocu/Makefile.flash,
tools/sfocu/Makefile.flashviz, tools/sfocu/Makefile.gin,
tools/sfocu/Makefile.gps, tools/sfocu/Makefile.monsun,
tools/sfocu/Makefile.sphere, tools/sfocu/README,
tools/sfocu/flash_reader.c, tools/sfocu/flash_reader.h,
tools/sfocu/flash_reader_hdf4.c, tools/sfocu/flash_reader_hdf5.c,
tools/sfocu/main.c, tools/sfocu/sfocu.c, tools/sfocu/test_reader.c:
Initial revision
2003-06-02 18:42 kmriley
* Makefile, Readme, setup, bin/make_bstats, bin/make_flashModules,
bin/make_release, bin/setup.py, bin/setupGUI,
docs/FAQ/FLASH_FAQ.txt, docs/FAQ/Tagging_FAQ.txt,
docs/HOWTO/ASCI-Blue-Pacific-HOWTO, docs/HOWTO/ASCI-Nirvana-HOWTO,
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setups/flame_xrb/init_block.F90, setups/flame_xrb/user_bnd.F90,
setups/flamecurvature/Config, setups/flamecurvature/Makefile,
setups/flamecurvature/README, setups/flamecurvature/README-scripts,
setups/flamecurvature/curveplots.pro,
setups/flamecurvature/doflameloc.pro,
setups/flamecurvature/fitzeldovich,
setups/flamecurvature/flame_speed.pro,
setups/flamecurvature/flamecurve_cf88,
setups/flamecurvature/flash.par,
setups/flamecurvature/flash.par.arrhenius,
setups/flamecurvature/flash.par.batch_cf88,
setups/flamecurvature/flash.par.cf88,
setups/flamecurvature/flash.par.kpp,
setups/flamecurvature/init_block.F90,
setups/flamecurvature/lagrange.pro,
setups/flamecurvature/lagrangevel.pro,
setups/flamecurvature/position.pro,
setups/flamecurvature/procdata.pro,
setups/flamecurvature/speed_vs_curvature.pro,
setups/flamecurvature/user_bnd.F90,
setups/flamecurvature/user_var.F90, setups/flamegrav/Config,
setups/flamegrav/Makefile, setups/flamegrav/flash.par,
setups/flamegrav/init_1d.F90, setups/flamegrav/init_block.F90,
setups/flamegrav/init_mat.F90, setups/flamegrav/user_bnd.F90,
setups/front_tracking_test1/Config,
setups/front_tracking_test1/Makefile,
setups/front_tracking_test1/README,
setups/front_tracking_test1/composition_C-O-Mg.dat,
setups/front_tracking_test1/composition_fuel+ash.dat,
setups/front_tracking_test1/flash.par.gamma,
setups/front_tracking_test1/flash.par.helmholtz,
setups/front_tracking_test1/init_block.F90,
setups/front_tracking_test1/user_bnd.F90,
setups/front_tracking_test1/wr_integrals.F90,
setups/gas_curtain/Config, setups/gas_curtain/Makefile,
setups/gas_curtain/flash.par, setups/gas_curtain/gas_curtain.F90,
setups/gas_curtain/gas_curtain_dat,
setups/gas_curtain/init_block.F90, setups/gas_curtain/init_mat.F90,
setups/gas_curtain/user_bnd.F90, setups/geom_test/Config,
setups/geom_test/flash.par, setups/geom_test/init_block.F90,
setups/globclust/Config, setups/globclust/CoolDataModule.F90,
setups/globclust/InitParticlePositions.F90,
setups/globclust/Makefile, setups/globclust/cool_block.F90,
setups/globclust/eos.F90, setups/globclust/eos1d.F90,
setups/globclust/erf.f, setups/globclust/flash.par,
setups/globclust/flash.par.1dsph, setups/globclust/flash.par.2dcyl,
setups/globclust/gasdev.f, setups/globclust/heat.F90,
setups/globclust/heat_block.F90, setups/globclust/hunt.f,
setups/globclust/init_block.F90,
setups/globclust/mark_grid_refinement.F90,
setups/globclust/odeint.f, setups/globclust/polint.f,
setups/globclust/profiles.F90, setups/globclust/qtrap.f,
setups/globclust/rkck.f, setups/globclust/rkqs.f,
setups/globclust/trapzd.f, setups/globclust/bl93/Config,
setups/globclust/bl93/PPMData.F90,
setups/globclust/bl93/PPMInit.F90,
setups/globclust/bl93/hydro_1d.F90,
setups/globclust/bl93/intrfc.F90, setups/globclust/bl93/monot.F90,
setups/globclust/bl93/update_soln.F90,
setups/globclust/radloss/cool_block.F90,
setups/guardcell_test/Config, setups/guardcell_test/flash.par,
setups/guardcell_test/init_block.F90, setups/gwave/Config,
setups/gwave/flash.par, setups/gwave/init_block.F90,
setups/gwave/makebrick.pro, setups/gwave/write_brick_f77.pro,
setups/gwave_mhd/Config, setups/gwave_mhd/Makefile,
setups/gwave_mhd/flash.par, setups/gwave_mhd/init_block.F90,
setups/gwave_mhd/init_mat.F90, setups/gwave_mhd/user_bnd.F90,
setups/hallmhd2d_test/Config, setups/hallmhd2d_test/evolve.F90,
setups/hallmhd2d_test/flash.par,
setups/hallmhd2d_test/init_block.F90, setups/helix/Config,
setups/helix/Makefile, setups/helix/flash.par,
setups/helix/init_block.F90, setups/helix/ref_marking.F90,
setups/hot_bubble/Config, setups/hot_bubble/Makefile,
setups/hot_bubble/flash.par, setups/hot_bubble/init_block.F90,
setups/hot_bubble/user_bnd.F90, setups/hot_bubble_isot/Config,
setups/hot_bubble_isot/Makefile, setups/hot_bubble_isot/README,
setups/hot_bubble_isot/bc_plots.pro,
setups/hot_bubble_isot/flash.par,
setups/hot_bubble_isot/flash.par.batch,
setups/hot_bubble_isot/init_block.F90,
setups/hot_bubble_isot/paper_bc_plots.pro,
setups/hot_bubble_isot/paper_bc_plots2.pro,
setups/hot_bubble_isot/submit_atm,
setups/hot_bubble_isot/user_bnd.F90,
setups/hse_isothermal_atm/Config,
setups/hse_isothermal_atm/Makefile,
setups/hse_isothermal_atm/README,
setups/hse_isothermal_atm/bc_plots.pro,
setups/hse_isothermal_atm/flash.par,
setups/hse_isothermal_atm/flash.par.batch,
setups/hse_isothermal_atm/init_block.F90,
setups/hse_isothermal_atm/paper_bc_plots.pro,
setups/hse_isothermal_atm/paper_bc_plots2.pro,
setups/hse_isothermal_atm/submit_atm,
setups/hse_isothermal_atm/user_bnd.F90,
setups/hse_isothermal_fuel+ash/Config,
setups/hse_isothermal_fuel+ash/Makefile,
setups/hse_isothermal_fuel+ash/README,
setups/hse_isothermal_fuel+ash/flash.par,
setups/hse_isothermal_fuel+ash/flash.par.test,
setups/hse_isothermal_fuel+ash/init_block.F90,
setups/hse_isothermal_fuel+ash/user_bnd.F90,
setups/hypre_test/Config, setups/hypre_test/flash.F90,
setups/hypre_test/flash.par, setups/hypre_test/fort_arr.c,
setups/hypre_test/fort_arr.h, setups/hypre_test/init_block.F90,
setups/isentropic_vortex/Config,
setups/isentropic_vortex/flash.par,
setups/isentropic_vortex/flash_error.in,
setups/isentropic_vortex/flash_error.pro,
setups/isentropic_vortex/init_block.F90,
setups/isentropic_vortex/init_from_scratch.F90,
setups/jeans/Config, setups/jeans/flash.par,
setups/jeans/init_block.F90, setups/jeans/ref_marking.F90,
setups/kh_mhd/Config, setups/kh_mhd/flash.par,
setups/kh_mhd/init_block.F90, setups/kh_mhd/init_mat.F90,
setups/kppburntest/Config, setups/kppburntest/Makefile,
setups/kppburntest/comparekpp.pro, setups/kppburntest/flash.par,
setups/kppburntest/init_block.F90, setups/kppburntest/init_mat.F90,
setups/kppburntest/measurekpp.pro, setups/kppburntest/user_bnd.F90,
setups/kppburntest/wr_integrals.F90, setups/lantzsudan/Config,
setups/lantzsudan/flash.par, setups/lantzsudan/init_block.F90,
setups/ld/Config, setups/ld/Makefile, setups/ld/dirscript,
setups/ld/fitwrinkle.pro, setups/ld/flame_5e7_cf88_c12mg24.out,
setups/ld/flame_5e7_coul.out, setups/ld/flame_5e8_coul.out,
setups/ld/flame_kpp.out, setups/ld/flash.par,
setups/ld/flash.par.cf88_angle, setups/ld/flash.par.cf88_c12mg24,
setups/ld/flash.par.cf88_c12mg24_shift, setups/ld/flash.par.kpp,
setups/ld/getinfo.pro, setups/ld/init_block.F90,
setups/ld/mark_grid_refinement.F90, setups/ld/user_bnd.F90,
setups/lss_read/Config, setups/lss_read/InitParticlePositions.F90,
setups/lss_read/InitSingleParticle.F90, setups/lss_read/Makefile,
setups/lss_read/ReadGaussinitInputFile.F90,
setups/lss_read/ReadHeitmannInputFile.F90,
setups/lss_read/ReadMiniatiInputFile.F90,
setups/lss_read/ReadSantaBarbaraInputFile.F90,
setups/lss_read/ReadTeodoroInputFile.F90,
setups/lss_read/downsample.F90, setups/lss_read/flash.par,
setups/lss_read/init_block.F90,
setups/lss_read/init_from_scratch.F90,
setups/lss_read/init_mat.F90,
setups/lss_read/mark_grid_refinement.F90,
setups/lss_read/analysis/cvt_pmask_to_bmask.pro,
setups/lss_read/analysis/example.idl,
setups/lss_read/analysis/mark_in_sphere.pro,
setups/lss_read/analysis/mark_spheres_in_file.pro,
setups/lss_read/analysis/read_particle_mask.pro,
setups/lss_read/analysis/write_block_mask.pro,
setups/lss_read/analysis/write_particle_mask.pro,
setups/mach/Config, setups/mach/init_block.F90,
setups/mach/tot_bnd.F.exper, setups/maclaurin/Config,
setups/maclaurin/evolve.F90, setups/maclaurin/flash.par,
setups/maclaurin/init_block.F90, setups/maclaurin/maclaurin.pro,
setups/maclaurin/mark_grid_refinement.F90,
setups/mag_bubble/Config, setups/mag_bubble/Makefile,
setups/mag_bubble/README, setups/mag_bubble/bc_plots.pro,
setups/mag_bubble/flash.par, setups/mag_bubble/flash.par.batch,
setups/mag_bubble/init_block.F90,
setups/mag_bubble/paper_bc_plots.pro,
setups/mag_bubble/paper_bc_plots2.pro,
setups/mag_bubble/submit_atm, setups/mag_bubble/user_bnd.F90,
setups/matchhead/Config, setups/matchhead/flash.par,
setups/matchhead/flash.par.batch, setups/matchhead/init_block.F90,
setups/matchhead/submit_mh, setups/matchhead_1d/Config,
setups/matchhead_1d/flash.par, setups/matchhead_1d/flash.par.5e6,
setups/matchhead_1d/init_block.F90, setups/neitest/Config,
setups/neitest/flash.par, setups/neitest/init_block.F90,
setups/neitest/update_soln.F90, setups/nova/Config,
setups/nova/Makefile, setups/nova/README, setups/nova/flash.par,
setups/nova/init_block.F90, setups/nova/mix.F90,
setups/nova/mixing_subgrid.F90, setups/nova/nova-abund.dat,
setups/nova/nova-model.dat, setups/nova/nova.dat,
setups/nova/source_termsModule.F90, setups/nova/tot_bnd.F90,
setups/nova/non-numrecipies/hunt.F90,
setups/nova/non-numrecipies/polint.F90,
setups/nova/novamodels/Makefile,
setups/nova/novamodels/convertprofile.c,
setups/nova/novamodels/convective/nova-abund.dat,
setups/nova/novamodels/convective/nova-model.dat,
setups/nova/novamodels/preconvecting/nova-abund.dat,
setups/nova/novamodels/preconvecting/nova-model-T640,
setups/nova/novamodels/preconvecting/nova-model.dat,
setups/nova/novamodels/preconvective/nova-abund.dat,
setups/nova/novamodels/preconvective/nova-model.dat,
setups/odd_even/Config, setups/odd_even/flash.par,
setups/odd_even/init_block.F90, setups/orbit/Config,
setups/orbit/InitParticlePositions.F90, setups/orbit/Makefile,
setups/orbit/flash.par, setups/orbit/init_block.F90,
setups/orbit/ref_marking.F90, setups/orbit/wr_integrals.F90,
setups/orszag_tang/Config, setups/orszag_tang/flash.par,
setups/orszag_tang/init_block.F90, setups/pancake/Config,
setups/pancake/InitParticlePositions.F90, setups/pancake/Makefile,
setups/pancake/flash.par, setups/pancake/init_block.F90,
setups/pancake/init_mat.F90,
setups/pancake/mark_grid_refinement.F90, setups/poistest/Config,
setups/poistest/Makefile, setups/poistest/flash.F90,
setups/poistest/flash.par, setups/poistest/init_block.F90,
setups/pp-hse/Config, setups/pp-hse/flash.par,
setups/pp-hse/init_block.F90, setups/ppm-new/Config,
setups/ppm-new/flash.par, setups/ppm-new/init_block.F90,
setups/rad_test/Config, setups/rad_test/evolve.F90,
setups/rad_test/flash.par, setups/rad_test/init_block.F90,
setups/rad_test/init_mat.F90, setups/relsod/Config,
setups/relsod/eos3d.F90, setups/relsod/flash.par,
setups/relsod/init_block.F90, setups/relsod/init_block_inhomo.F90,
setups/relsod/init_block_inhomo2.F90, setups/riemann_2d/Config,
setups/riemann_2d/flash.par, setups/riemann_2d/flash.par.4contact,
setups/riemann_2d/init_block.F90, setups/rosetta/Config,
setups/rosetta/Makefile, setups/rosetta/flash.par,
setups/rosetta/init_block.F90, setups/rosetta/mhd_sweep.F90,
setups/rosetta/user_bnd.F90, setups/rosetta/zcurrent.F90,
setups/rt/Config, setups/rt/Makefile, setups/rt/flash.par,
setups/rt/init_block.F90, setups/rt/init_mat.F90,
setups/rt/user_bnd.F90, setups/rt_mhd/Config,
setups/rt_mhd/Makefile, setups/rt_mhd/flash.par,
setups/rt_mhd/init_block.F90, setups/rt_mhd/init_mat.F90,
setups/rt_mhd/mark_grid_refinement.F90, setups/rt_mhd/user_bnd.F90,
setups/rt_new/Config, setups/rt_new/Makefile,
setups/rt_new/diagnost_rt.F90, setups/rt_new/evolve.F90,
setups/rt_new/flash.par, setups/rt_new/init_block.F90,
setups/rt_new/init_mat.F90, setups/rt_new/mark_grid_refinement.F90,
setups/rt_new/numerical_noise.c, setups/rt_new/user_bnd.F90,
setups/rt_new_pm3/Config, setups/rt_new_pm3/Makefile,
setups/rt_new_pm3/diagnost_rt.F90, setups/rt_new_pm3/evolve.F90,
setups/rt_new_pm3/flash.par, setups/rt_new_pm3/init_block.F90,
setups/rt_new_pm3/init_mat.F90,
setups/rt_new_pm3/mark_grid_refinement.F90,
setups/rt_new_pm3/user_bnd.F90, setups/sample_map/Config,
setups/sample_map/README, setups/sample_map/flash.par,
setups/sample_map/init_block.F90, setups/sample_map/inputfile.in,
setups/scaling_test/Config, setups/scaling_test/README.doscalings,
setups/scaling_test/divide_domain.F90,
setups/scaling_test/doscalings, setups/scaling_test/flash.par,
setups/scaling_test/init_block.F90,
setups/scaling_test/init_from_scratch.F90,
setups/scaling_test/scale, setups/scaling_test/timings,
setups/sedov/Config, setups/sedov/flash.par,
setups/sedov/init_block.F90, setups/sedov_pm3/Config,
setups/sedov_pm3/flash.par, setups/sedov_pm3/init_block.F90,
setups/sedov_sph/Config, setups/sedov_sph/compare_sedov.pro,
setups/sedov_sph/compare_sedov_polar.pro,
setups/sedov_sph/flash.par, setups/sedov_sph/flash.par.2d,
setups/sedov_sph/init_block.F90, setups/sedov_ug/Config,
setups/sedov_ug/flash.par, setups/sedov_ug/init_block.F90,
setups/shock2cyl_3d/2cylimg.dat, setups/shock2cyl_3d/Config,
setups/shock2cyl_3d/flash.par, setups/shock2cyl_3d/init_block.F90,
setups/shock2cyl_3d/init_mat.F90,
setups/shock2cyl_3d/mark_grid_refinement.F90,
setups/shockcyl_3d/1cyl_img, setups/shockcyl_3d/Config,
setups/shockcyl_3d/flash.par, setups/shockcyl_3d/init_block.F90,
setups/shockcyl_3d/init_mat.F90,
setups/shockcyl_3d/mark_grid_refinement.F90,
setups/shu_osher/Config, setups/shu_osher/Makefile,
setups/shu_osher/flash.par, setups/shu_osher/init_block.F90,
setups/shu_osher/init_block.c, setups/shu_osher/user_bnd.F90,
setups/sn_popiii/Config, setups/sn_popiii/Makefile,
setups/sn_popiii/flash.par, setups/sn_popiii/init_block.F90,
setups/sn_popiii/readtable.f, setups/sod/Config,
setups/sod/doconvergence, setups/sod/flash.par,
setups/sod/flash.par.rhd, setups/sod/flash.par.stationary,
setups/sod/init_block.F90, setups/sod/init_block.c,
setups/sod/shocktube.pro, setups/sod/soderror.pro,
setups/sod_sph/Config, setups/sod_sph/Makefile,
setups/sod_sph/flash.par, setups/sod_sph/init_block.F90,
setups/soundwave/Config, setups/soundwave/flash.par,
setups/soundwave/init_block.F90, setups/soundwave/soundwave.pro,
setups/soundwave/soundwaveerror.pro,
setups/source_terms_compilation_test/Config,
setups/source_terms_compilation_test/flash.par,
setups/source_terms_compilation_test/init_block.F90,
setups/sphcoll/Config, setups/sphcoll/InitParticlePositions.F90,
setups/sphcoll/flash.par, setups/sphcoll/init_block.F90,
setups/spitzer_condtest/Config, setups/spitzer_condtest/flash.par,
setups/spitzer_condtest/init_block.F90, setups/stirturb/Config,
setups/stirturb/flash.par, setups/stirturb/init_block.F90,
setups/stirturb/wr_integrals.F90, setups/t1a_convect/Config,
setups/t1a_convect/Makefile, setups/t1a_convect/MarkRefLib.F90,
setups/t1a_convect/calcpot.pro, setups/t1a_convect/day_before.dat,
setups/t1a_convect/day_before_b.dat, setups/t1a_convect/evolve.F90,
setups/t1a_convect/flash.par, setups/t1a_convect/hunt.F90,
setups/t1a_convect/hydro_sweep.F90,
setups/t1a_convect/init_block.F90,
setups/t1a_convect/mark_grid_refinement.F90,
setups/t1a_convect/polint.F90,
setups/t1a_convect/spherical_hse_1d.F90, setups/twogamma/Config,
setups/twogamma/Makefile, setups/twogamma/README,
setups/twogamma/flash.par, setups/twogamma/init_block.F90,
setups/twogamma/init_mat.F90, setups/twogamma/user_bnd.F90,
setups/type1a/Config, setups/type1a/coldwd_1p0msun.dat,
setups/type1a/flash.par, setups/type1a/init_block.F90,
setups/wd_convect/Config, setups/wd_convect/Config.1d_sph,
setups/wd_convect/Config.2d_cyl, setups/wd_convect/Makefile,
setups/wd_convect/README, setups/wd_convect/day_before.dat,
setups/wd_convect/day_before_b.dat, setups/wd_convect/eos3d.F90,
setups/wd_convect/flash.par, setups/wd_convect/flash.par.1d_sph,
setups/wd_convect/flash.par.2d_cyl,
setups/wd_convect/hydro_sweep.F90,
setups/wd_convect/init_block.F90,
setups/wd_convect/spherical_hse_1d.F90,
setups/wd_crushturbulence/Config,
setups/wd_crushturbulence/Makefile,
setups/wd_crushturbulence/flash.par,
setups/wd_crushturbulence/init_block.F90,
setups/wd_crushturbulence/init_from_scratch.F90,
setups/wd_crushturbulence/turb_ic.dat.gz,
setups/wd_crushturbulence/user_bnd.F90,
setups/wd_crushturbulence/wr_integrals.F90,
setups/wd_crushturbulence/makeICs/Makefile,
setups/wd_crushturbulence/makeICs/README,
setups/wd_crushturbulence/makeICs/angles.c,
setups/wd_crushturbulence/makeICs/angles.h,
setups/wd_crushturbulence/makeICs/ic.c,
setups/wd_crushturbulence/makeICs/ic.h,
setups/wd_crushturbulence/makeICs/rotate.c,
setups/wd_crushturbulence/makeICs/rotate.h,
setups/wd_crushturbulence/makeICs/spectrum.c,
setups/wd_crushturbulence/makeICs/spectrum.h,
setups/wd_crushturbulence/makeICs/vk.c,
setups/wd_crushturbulence/makeICs/vk.h, setups/windtunnel/Config,
setups/windtunnel/Makefile, setups/windtunnel/divide_domain.F90,
setups/windtunnel/flash.par, setups/windtunnel/init_block.F90,
setups/windtunnel/init_block.c, setups/windtunnel/user_bnd.F90,
setups/xrb_hse_test/Config, setups/xrb_hse_test/Makefile,
setups/xrb_hse_test/README, setups/xrb_hse_test/amr_uniform.pro,
setups/xrb_hse_test/batch_vis, setups/xrb_hse_test/bc_figure.pro,
setups/xrb_hse_test/bc_plots.pro,
setups/xrb_hse_test/burst_model.dat,
setups/xrb_hse_test/burst_model_cool.dat,
setups/xrb_hse_test/flash.par, setups/xrb_hse_test/flash.par.batch,
setups/xrb_hse_test/hse_plots.pro,
setups/xrb_hse_test/init_block.F90,
setups/xrb_hse_test/paper_bc_plots.pro,
setups/xrb_hse_test/paper_bc_plots2.pro,
setups/xrb_hse_test/paper_init_order.pro,
setups/xrb_hse_test/ppm_hse_comp.pro,
setups/xrb_hse_test/submit_xrb, setups/xrb_hse_test/user_bnd.F90,
setups/xrb_spread/Config, setups/xrb_spread/Makefile,
setups/xrb_spread/README, setups/xrb_spread/flash.par,
setups/xrb_spread/flash.par.cyl, setups/xrb_spread/init_1d.F90,
setups/xrb_spread/init_block.F90, setups/xrb_spread/user_bnd.F90,
source/cosmology/Config,
source/cosmology/CosmologicalFunctions.F90,
source/cosmology/Cosmology.F90,
source/cosmology/ExpansionTimestep.F90,
source/cosmology/Friedmann.F90, source/cosmology/Makefile,
source/cosmology/RedshiftHydro.F90,
source/cosmology/matter+lambda/Config,
source/cosmology/matter+lambda/CosmologicalFunctions.F90,
source/cosmology/matter+lambda/Friedmann.F90,
source/cosmology/matter+lambda/Makefile,
source/cosmology/null/ExpansionTimestep.F90,
source/cosmology/null/RedshiftHydro.F90, source/database/Config,
source/database/Makefile, source/database/dBaseConstants.h,
source/database/dBaseCoords.F90,
source/database/dBaseCoordsByName.F90,
source/database/dBaseCoordsByNumber.F90,
source/database/dBaseData.F90, source/database/dBaseDataByName.F90,
source/database/dBaseDataByNumber.F90,
source/database/dBaseDataByPointer.F90,
source/database/dBaseErrors.F90, source/database/dBaseKey.F90,
source/database/runtime_scratch.F90, source/database/variables.F90,
source/database/amr/Config, source/database/amr/Makefile,
source/database/amr/dBaseBoundaryData.F90,
source/database/amr/dBaseBoundaryDataByName.F90,
source/database/amr/dBaseBoundaryDataByPointer.F90,
source/database/amr/paramesh2.0/Config,
source/database/amr/paramesh2.0/Makefile,
source/database/amr/paramesh2.0/dBase.F90,
source/database/amr/paramesh2.0/dBase.int,
source/database/amr/paramesh2.0/dBaseDeclarations.F90,
source/database/amr/paramesh2.0/dBaseIncludes.F90,
source/database/amr/paramesh2.0/dBaseProperties.F90,
source/database/amr/paramesh2.0/dBaseTree.F90,
source/database/amr/paramesh2.0/physicaldata.F90,
source/database/amr/paramesh2.0/physicaldata_dynamic.F90,
source/database/amr/paramesh2.0/tree.F90,
source/database/amr/paramesh2.0/tree_dynamic.F90,
source/database/amr/paramesh2.0/workspace.F90,
source/database/amr/paramesh2.0/workspace_dynamic.F90,
source/database/amr/paramesh3.0/Config,
source/database/amr/paramesh3.0/Makefile,
source/database/amr/paramesh3.0/dBase.F90,
source/database/amr/paramesh3.0/dBaseDataByNumber.F90,
source/database/amr/paramesh3.0/dBaseDeclarations.F90,
source/database/amr/paramesh3.0/dBaseIncludes.F90,
source/database/amr/paramesh3.0/dBaseProperties.F90,
source/database/amr/paramesh3.0/dBaseTree.F90,
source/database/ug/Config, source/database/ug/Makefile,
source/database/ug/dBase.F90, source/database/ug/dBase.int,
source/database/ug/dBaseBoundaryData.F90,
source/database/ug/dBaseBoundaryDataByName.F90,
source/database/ug/dBaseBoundaryDataByPointer.F90,
source/database/ug/dBaseIncludes.F90,
source/database/ug/dBaseProperties.F90,
source/database/ug/dBaseTree.F90,
source/database/ug/uniformGrid/Makefile,
source/database/ug/uniformGrid/dBaseDeclarations.F90,
source/database/ug/uniformGrid/dBaseIncludes.F90,
source/database/ug/uniformGrid/dBaseTree.F90,
source/database/ug/uniformGridII/GridMappers.c,
source/database/ug/uniformGridII/Makefile,
source/database/ug/uniformGridII/dBaseDeclarations.F90,
source/database/ug/uniformGridII/dBaseIncludes.F90,
source/database/ug/uniformGridII/dBaseTree.F90,
source/database/ug/uniformGridII/physicaldata.F90,
source/driver/Config, source/driver/Makefile,
source/driver/abort_flash.F90,
source/driver/convert_var_cons_to_prim.F90,
source/driver/convert_var_prim_to_cons.F90,
source/driver/driver.int, source/driver/end_flash.F90,
source/driver/flash.F90, source/driver/init_flash.F90,
source/driver/init_from_checkpoint.F90,
source/driver/init_from_scratch.F90, source/driver/mangle_names.h,
source/driver/physical_constants.F90,
source/driver/read_parameters.F90,
source/driver/runtime_parameters.F90,
source/driver/signal_handler.c, source/driver/rhd/Config,
source/driver/rhd/Makefile,
source/driver/rhd/convert_var_cons_to_prim.F90,
source/driver/rhd/convert_var_prim_to_cons.F90,
source/driver/time_advancement/Config,
source/driver/time_advancement/Makefile,
source/driver/time_advancement/init_time_advancement.F90,
source/driver/time_advancement/delta_form/Config,
source/driver/time_advancement/delta_form/Makefile,
source/driver/time_advancement/delta_form/advanceBlockList.F90,
source/driver/time_advancement/delta_form/time_advancement.F90,
source/driver/time_advancement/delta_form/euler1/Makefile,
source/driver/time_advancement/delta_form/euler1/time_advancement_p
arameters.F90,
source/driver/time_advancement/delta_form/rk2n/Config,
source/driver/time_advancement/delta_form/rk2n/Makefile,
source/driver/time_advancement/delta_form/rk2n/williamson3/time_adv
ancement_parameters.F90,
source/driver/time_advancement/state_form/Config,
source/driver/time_advancement/state_form/strang/Makefile,
source/driver/time_advancement/state_form/strang/advanceBlockList.F
90,
source/driver/time_advancement/state_form/strang/time_advancement.F
90, source/driver/time_dep/Config, source/driver/time_dep/Makefile,
source/driver/time_dep/evolve.F90,
source/driver/time_dep/flash.F90,
source/driver/time_dep/timestep.F90,
source/driver/time_dep/tstep_temperature.F90,
source/driver/time_dep/tstep_temperature_precompute.F90,
source/driver/time_dep/delta_form/Config,
source/driver/time_dep/delta_form/Makefile,
source/driver/time_dep/delta_form/euler1/Config,
source/driver/time_dep/delta_form/euler1/Makefile,
source/driver/time_dep/delta_form/euler1/evolve.F90,
source/driver/time_dep/delta_form/rk3/Config,
source/driver/time_dep/delta_form/rk3/Makefile,
source/driver/time_dep/delta_form/rk3/evolve.F90,
source/driver/time_dep/delta_form/strang_delta/Config,
source/driver/time_dep/delta_form/strang_delta/Makefile,
source/driver/time_dep/delta_form/strang_delta/evolve.F90,
source/driver/time_dep/delta_form/strang_state/Config,
source/driver/time_dep/delta_form/strang_state/Makefile,
source/driver/time_dep/delta_form/strang_state/evolve.F90,
source/driver/x_refinement/Config,
source/driver/x_refinement/Makefile,
source/driver/x_refinement/eos_guards.F90,
source/driver/x_refinement/flash.F90,
source/driver/x_refinement/fluxcorrect.F90,
source/driver/x_refinement/fluxcorrect_data.F90,
source/driver/x_refinement/get_block_coords.F90,
source/driver/x_refinement/globalDriver.F90,
source/driver/x_refinement/init_datasets.F90,
source/driver/x_refinement/init_flash.F90,
source/driver/x_refinement/timestep.F90,
source/driver/x_refinement/tstep_temperature.F90,
source/driver/x_refinement/tstep_temperature_precompute.F90,
source/formulation/Makefile, source/formulation/init_form.F90,
source/formulation/state_form/Config,
source/formulation/state_form/Makefile,
source/formulation/state_form/du_update_block.F90,
source/formulation/state_form/du_update_xface.F90,
source/formulation/state_form/du_update_yface.F90,
source/formulation/state_form/du_update_zface.F90,
source/formulation/state_form/formulation_Module.F90,
source/formulation/state_form/init_form.F90,
source/formulation/state_form/delta_form/Config,
source/formulation/state_form/delta_form/Makefile,
source/formulation/state_form/delta_form/du_update.F90,
source/formulation/state_form/delta_form/formulation_Module.F90,
source/gravity/Config, source/gravity/GravAccelAllBlocks.F90,
source/gravity/GravAccelOneBlock.F90,
source/gravity/GravAccelOneLevel.F90,
source/gravity/GravAccelOneRow.F90,
source/gravity/GravAccelOneZone.F90,
source/gravity/GravPotentialAllBlocks.F90,
source/gravity/GravPotentialOneBlock.F90,
source/gravity/GravPotentialOneLevel.F90,
source/gravity/Gravity.F90, source/gravity/GravityTimestep.F90,
source/gravity/InitGravity.F90, source/gravity/Makefile,
source/gravity/constant/Config,
source/gravity/constant/GravAccelOneRow.F90,
source/gravity/constant/GravAccelOneZone.F90,
source/gravity/constant/Makefile, source/gravity/null/Config,
source/gravity/null/GravAccelOneRow.F90,
source/gravity/null/GravAccelOneZone.F90,
source/gravity/null/Makefile, source/gravity/planepar/Config,
source/gravity/planepar/GravAccelOneRow.F90,
source/gravity/planepar/GravAccelOneZone.F90,
source/gravity/planepar/Makefile, source/gravity/poisson/Config,
source/gravity/poisson/GravAccelAllBlocks.F90,
source/gravity/poisson/GravAccelOneRow.F90,
source/gravity/poisson/GravPotentialAllBlocks.F90,
source/gravity/poisson/InitGravity.F90,
source/gravity/poisson/Makefile,
source/gravity/poisson/fft/Makefile,
source/gravity/poisson/fft/fft_solve_iso.F90,
source/gravity/poisson/fft/fft_solve_per.F90,
source/gravity/poisson/fft/fourn.F90,
source/gravity/poisson/fft/poisson.F90,
source/gravity/poisson/multigrid/Config,
source/gravity/poisson/multigrid/Makefile,
source/gravity/poisson/multipole/Config,
source/gravity/poisson/multipole/InitGravity.F90,
source/gravity/poisson/multipole/Makefile,
source/gravity/ptmass/Config,
source/gravity/ptmass/GravAccelAllBlocks.F90,
source/gravity/ptmass/GravAccelOneRow.F90,
source/gravity/ptmass/Makefile, source/hydro/Config,
source/hydro/Makefile, source/hydro/hydro.F90,
source/hydro/init_hydro.F90, source/hydro/mhd_sweepbegin.F90,
source/hydro/mhd_sweepend.F90, source/hydro/shock_detect.F90,
source/hydro/tstep_diffuse.F90, source/hydro/tstep_hydro.F90,
source/hydro/explicit/Config, source/hydro/explicit/Makefile,
source/hydro/explicit/limiters.F90,
source/hydro/explicit/shock_detect.F90,
source/hydro/explicit/tstep_hydro.F90,
source/hydro/explicit/delta_form/Config,
source/hydro/explicit/delta_form/Makefile,
source/hydro/explicit/delta_form/hydro.F90,
source/hydro/explicit/delta_form/kurganov/Config,
source/hydro/explicit/delta_form/kurganov/Makefile,
source/hydro/explicit/delta_form/kurganov/get_block_coords.F90,
source/hydro/explicit/delta_form/kurganov/hydro.F90,
source/hydro/explicit/delta_form/kurganov/hydro_3d.F90,
source/hydro/explicit/delta_form/kurganov/init_hydro.F90,
source/hydro/explicit/delta_form/kurganov/init_hydro_algo.F90,
source/hydro/explicit/delta_form/kurganov/init_hydro_db.F90,
source/hydro/explicit/delta_form/kurganov/init_hydro_timers.F90,
source/hydro/explicit/delta_form/kurganov/kurganov_block_x.F90,
source/hydro/explicit/delta_form/kurganov/kurganov_block_y.F90,
source/hydro/explicit/delta_form/kurganov/kurganov_block_z.F90,
source/hydro/explicit/delta_form/kurganov/kurganov_line.F90,
source/hydro/explicit/euler_ms/Config,
source/hydro/explicit/euler_ms/kurganov/Config,
source/hydro/explicit/euler_ms/kurganov/Makefile,
source/hydro/explicit/euler_ms/kurganov/central_place.F90,
source/hydro/explicit/euler_ms/kurganov/hydro.F90,
source/hydro/explicit/euler_ms/kurganov/hydro_data.F90,
source/hydro/explicit/euler_ms/kurganov/init_hydro.F90,
source/hydro/explicit/euler_ms/kurganov/kurganov_module.F90,
source/hydro/explicit/euler_ms/ppm/Config,
source/hydro/explicit/euler_ms/ppm/Makefile,
source/hydro/explicit/euler_ms/ppm/PPMData.F90,
source/hydro/explicit/euler_ms/ppm/PPMInit.F90,
source/hydro/explicit/euler_ms/ppm/PPMModule.F90,
source/hydro/explicit/euler_ms/ppm/avisco.F90,
source/hydro/explicit/euler_ms/ppm/central_place.F90,
source/hydro/explicit/euler_ms/ppm/cma_flatten.F90,
source/hydro/explicit/euler_ms/ppm/coeff.F90,
source/hydro/explicit/euler_ms/ppm/detect.F90,
source/hydro/explicit/euler_ms/ppm/diffuse.F90,
source/hydro/explicit/euler_ms/ppm/flaten.F90,
source/hydro/explicit/euler_ms/ppm/force.F90,
source/hydro/explicit/euler_ms/ppm/geom.F90,
source/hydro/explicit/euler_ms/ppm/grdvel.F90,
source/hydro/explicit/euler_ms/ppm/hydro.F90,
source/hydro/explicit/euler_ms/ppm/hydro_1d.F90,
source/hydro/explicit/euler_ms/ppm/hydro_1dModule.F90,
source/hydro/explicit/euler_ms/ppm/interp.F90,
source/hydro/explicit/euler_ms/ppm/intrfc.F90,
source/hydro/explicit/euler_ms/ppm/monot.F90,
source/hydro/explicit/euler_ms/ppm/rieman.F90,
source/hydro/explicit/euler_ms/ppm/riemann_hlle.F90,
source/hydro/explicit/euler_ms/ppm/states.F90,
source/hydro/explicit/euler_ms/ppm/update_soln.F90,
source/hydro/explicit/split/Config,
source/hydro/explicit/split/Makefile,
source/hydro/explicit/split/diffuse.F90,
source/hydro/explicit/split/force.F90,
source/hydro/explicit/split/geom.F90,
source/hydro/explicit/split/hydro.F90,
source/hydro/explicit/split/hydro_1dModule.F90,
source/hydro/explicit/split/hydro_sweep.F90,
source/hydro/explicit/split/update_soln.F90,
source/hydro/explicit/split/ppm/Config,
source/hydro/explicit/split/ppm/Makefile,
source/hydro/explicit/split/ppm/PPMData.F90,
source/hydro/explicit/split/ppm/PPMInit.F90,
source/hydro/explicit/split/ppm/PPMModule.F90,
source/hydro/explicit/split/ppm/avisco.F90,
source/hydro/explicit/split/ppm/cma_flatten.F90,
source/hydro/explicit/split/ppm/coeff.F90,
source/hydro/explicit/split/ppm/detect.F90,
source/hydro/explicit/split/ppm/flaten.F90,
source/hydro/explicit/split/ppm/grdvel.F90,
source/hydro/explicit/split/ppm/hydro_1d.F90,
source/hydro/explicit/split/ppm/hydro_1dModule.F90,
source/hydro/explicit/split/ppm/interp.F90,
source/hydro/explicit/split/ppm/intrfc.F90,
source/hydro/explicit/split/ppm/monot.F90,
source/hydro/explicit/split/ppm/rieman.F90,
source/hydro/explicit/split/ppm/riemann_hlle.F90,
source/hydro/explicit/split/ppm/states.F90,
source/hydro/explicit/split/ppm/diffuse/Config,
source/hydro/explicit/split/ppm/diffuse/Makefile,
source/hydro/explicit/split/ppm/diffuse/diffuse.F90,
source/hydro/explicit/split/ppm/diffuse/species_explicit.F90,
source/hydro/explicit/split/ppm/diffuse/therm_explicit.F90,
source/hydro/explicit/split/ppm/diffuse/tstep_diffuse.F90,
source/hydro/explicit/split/ppm/diffuse/visc_explicit.F90,
source/hydro/explicit/split/ppm-rhd/Config,
source/hydro/explicit/split/ppm-rhd/Makefile,
source/hydro/explicit/split/ppm-rhd/error.c,
source/hydro/explicit/split/ppm-rhd/global.h,
source/hydro/explicit/split/ppm-rhd/grdvel.F90,
source/hydro/explicit/split/ppm-rhd/hydro_1d.F90,
source/hydro/explicit/split/ppm-rhd/hydro_1dModule.F90,
source/hydro/explicit/split/ppm-rhd/param.h,
source/hydro/explicit/split/ppm-rhd/pslopes.c,
source/hydro/explicit/split/ppm-rhd/riemann.c,
source/hydro/explicit/split/ppm-rhd/rphysics.c,
source/hydro/explicit/split/ppm-rhd/tstep_hydro.F90,
source/hydro/explicit/split/ppm-rhd/update_soln.F90,
source/hydro/explicit/split/ppm-rhd/util.c,
source/hydro/explicit/split/ppm-rhd/wrappers.c,
source/hydro/hall_mhd/Config, source/hydro/hall_mhd/Makefile,
source/hydro/hall_mhd/evolve.F90, source/hydro/hall_mhd/hall2d.F90,
source/hydro/hall_mhd/hall2d_data.F90,
source/hydro/hall_mhd/hall2d_init.F90,
source/hydro/hall_mhd/hall2d_tstep.F90,
source/hydro/hall_mhd/init_hydro.F90,
source/hydro/hall_mhd/tstep_hydro.F90, source/hydro/mhd/Config,
source/hydro/mhd/Makefile, source/hydro/mhd/hydro.F90,
source/hydro/mhd/init_hydro.F90, source/hydro/mhd/mhd_3d.F90,
source/hydro/mhd/mhd_add_resistive_fluxes.F90,
source/hydro/mhd/mhd_add_thermal_fluxes.F90,
source/hydro/mhd/mhd_add_viscous_fluxes.F90,
source/hydro/mhd/mhd_data.F90, source/hydro/mhd/mhd_divb.F90,
source/hydro/mhd/mhd_fluxes.F90, source/hydro/mhd/mhd_init.F90,
source/hydro/mhd/mhd_interpolate.F90,
source/hydro/mhd/mhd_sources.F90, source/hydro/mhd/mhd_sweep.F90,
source/hydro/mhd/mhd_sweepbegin.F90,
source/hydro/mhd/mhd_sweepend.F90, source/hydro/mhd/mhd_tstep.F90,
source/hydro/mhd/tstep_hydro.F90,
source/hydro/mhd/alt_driver/Config,
source/hydro/mhd/alt_driver/Makefile,
source/hydro/mhd/alt_driver/central_place.F90,
source/hydro/mhd/alt_driver/hydro.F90,
source/hydro/mhd/alt_driver/mhd_3d.F90,
source/hydro/mhd/alt_driver/mhd_sweep.F90,
source/hydro/mhd/divb_diffuse/Config,
source/hydro/mhd/divb_diffuse/Makefile,
source/hydro/mhd/divb_diffuse/mhd_divb.F90,
source/hydro/mhd/divb_diffuse/mhd_sources.F90,
source/hydro/mhd/divb_diffuse/mhd_sweepbegin.F90,
source/hydro/mhd/divb_project/Config,
source/hydro/mhd/divb_project/Makefile,
source/hydro/mhd/divb_project/mhd_divb.F90,
source/hydro/null/init_hydro.F90,
source/hydro/null/tstep_hydro.F90,
source/hydro/null/update_grid_refinement.F90, source/io/Config,
source/io/Makefile, source/io/checkpoint.F90,
source/io/extrema.F90, source/io/getParticlePlotVars.F90,
source/io/getPlotVars.F90, source/io/get_output_filename.F90,
source/io/getvarlabels.F90,
source/io/init_global_parms_checkpoint.F90, source/io/output.F90,
source/io/output_final.F90, source/io/output_initial.F90,
source/io/plotfile.F90, source/io/user_diag.F90,
source/io/user_var.F90, source/io/wr_integrals.F90,
source/io/amr/Config, source/io/amr/Makefile,
source/io/amr/README.IO, source/io/amr/gidTree.F90,
source/io/amr/chombo/CHOMBO.c, source/io/amr/chombo/Config,
source/io/amr/chombo/Makefile, source/io/amr/chombo/checkpoint.F90,
source/io/amr/chombo/chomboHDF5.c,
source/io/amr/chombo/chomboHDF5.h,
source/io/amr/chombo/chombo_decs.h,
source/io/amr/chombo/plotfile.F90, source/io/amr/hdf4/Config,
source/io/amr/hdf4/Makefile, source/io/amr/hdf4/checkpoint.F90,
source/io/amr/hdf4/plotfile.F90,
source/io/amr/hdf5_parallel/Config,
source/io/amr/hdf5_parallel/Makefile,
source/io/amr/hdf5_parallel/README,
source/io/amr/hdf5_parallel/checkpoint.F90,
source/io/amr/hdf5_parallel/h5_file_interface.c,
source/io/amr/hdf5_parallel/h5_parallel_read.c,
source/io/amr/hdf5_parallel/h5_parallel_write.c,
source/io/amr/hdf5_parallel/h5_parallel_write_single.c,
source/io/amr/hdf5_parallel/hdf5_flash.h,
source/io/amr/hdf5_parallel/init_global_parms_checkpoint.F90,
source/io/amr/hdf5_parallel/plotfile.F90,
source/io/amr/hdf5_serial/Config,
source/io/amr/hdf5_serial/Makefile,
source/io/amr/hdf5_serial/checkpoint.F90,
source/io/amr/hdf5_serial/h5_file_interface.c,
source/io/amr/hdf5_serial/h5_read.c,
source/io/amr/hdf5_serial/h5_write.c,
source/io/amr/hdf5_serial/h5_write_single.c,
source/io/amr/hdf5_serial/hdf5_flash.h,
source/io/amr/hdf5_serial/init_global_parms_checkpoint.F90,
source/io/amr/hdf5_serial/plotfile.F90, source/io/amr/ncmpi/Config,
source/io/amr/ncmpi/Makefile, source/io/amr/ncmpi/checkpoint.F90,
source/io/amr/ncmpi/flash_release.f,
source/io/amr/ncmpi/init_global_parms_checkpoint.F90,
source/io/amr/ncmpi/ncmpi_file_interface.c,
source/io/amr/ncmpi/ncmpi_flash.h,
source/io/amr/ncmpi/ncmpi_parallel_read.c,
source/io/amr/ncmpi/ncmpi_parallel_write.c,
source/io/amr/ncmpi/ncmpi_parallel_write_single.c,
source/io/amr/ncmpi/plotfile.F90, source/io/null/output.F90,
source/io/null/output_final.F90, source/io/null/output_initial.F90,
source/io/null/wr_integrals.F90, source/io/ug/Config,
source/io/ug/Makefile, source/io/ug/hdf5_parallel/Config,
source/io/ug/hdf5_parallel/Makefile,
source/io/ug/hdf5_parallel/README,
source/io/ug/hdf5_parallel/h5_file_interface.c,
source/io/ug/hdf5_parallel/h5_parallel_read.c,
source/io/ug/hdf5_parallel/h5_parallel_write.c,
source/io/ug/hdf5_parallel/h5_parallel_write_single.c,
source/io/ug/hdf5_parallel/hdf5_flash.h,
source/io/ug/hdf5_parallel/uniformGridII/Makefile,
source/io/ug/hdf5_parallel/uniformGridII/checkpoint.F90,
source/io/ug/hdf5_parallel/uniformGridII/gridNumToLeft.c,
source/io/ug/hdf5_parallel/uniformGridII/plotfile.F90,
source/io/ug/hdf5_parallel/uniformGridII/totBlocks.c,
source/materials/Config, source/materials/Makefile,
source/materials/abundance_renorm.F90,
source/materials/abundance_restrict.F90,
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source/mesh/ug/uniformGrid/ug_guardcellLocalGlobalEdges.F90,
source/mesh/ug/uniformGrid/ug_guardcellLocalGlobalFaces.F90,
source/mesh/ug/uniformGrid/ug_guardcellRemoteGlobal.F90,
source/mesh/ug/uniformGrid/ug_guardcellRemoteGlobalCorners.F90,
source/mesh/ug/uniformGrid/ug_guardcellRemoteGlobalEdges.F90,
source/mesh/ug/uniformGrid/ug_guardcellRemoteGlobalFaces.F90,
source/mesh/ug/uniformGrid/ug_initialize.F90,
source/mesh/ug/uniformGridII/BlockDef.c,
source/mesh/ug/uniformGridII/GridDecomp.c,
source/mesh/ug/uniformGridII/Makefile,
source/mesh/ug/uniformGridII/Notes,
source/mesh/ug/uniformGridII/WrapperPhysicalData.F90,
source/mesh/ug/uniformGridII/allocArrays.c,
source/mesh/ug/uniformGridII/calculateNeighborBlockNum.c,
source/mesh/ug/uniformGridII/calculateNeighborProc.c,
source/mesh/ug/uniformGridII/calculateNumToLeft.c,
source/mesh/ug/uniformGridII/createBlockCoordinates.c,
source/mesh/ug/uniformGridII/createBlockDecomp.c,
source/mesh/ug/uniformGridII/createBlockNeighbors.c,
source/mesh/ug/uniformGridII/createGridCoords.c,
source/mesh/ug/uniformGridII/createMpiTypes.c,
source/mesh/ug/uniformGridII/createTopology.c,
source/mesh/ug/uniformGridII/decomposeNumProcs.c,
source/mesh/ug/uniformGridII/finalize.c,
source/mesh/ug/uniformGridII/grid.h,
source/mesh/ug/uniformGridII/grid_defines.h,
source/mesh/ug/uniformGridII/grid_types.h,
source/mesh/ug/uniformGridII/guardcellFill.c,
source/mesh/ug/uniformGridII/guardcellFillLocal.c,
source/mesh/ug/uniformGridII/guardcellFillRemote.c,
source/mesh/ug/uniformGridII/initBoundaryConditions.c,
source/mesh/ug/uniformGridII/initGrid.c,
source/mesh/ug/uniformGridII/initLocalBlocks.c,
source/mesh/ug/uniformGridII/initialize.c,
source/mesh/ug/uniformGridII/mesh_interface.F90,
source/mesh/ug/uniformGridII/printGrid.c,
source/mesh/ug/uniformGridII/printLocalBlocks.c,
source/mesh/ug/uniformGridII/printSolnData.c,
source/mesh/ug/uniformGridII/routines.h,
source/mesh/ug/uniformGridII/tot_bnd.F90,
source/mesh/ug/uniformGridII/user_bnd.F90,
source/mesh/ug/uniformGridII/unitTest/Makefile,
source/mesh/ug/uniformGridII/unitTest/Makefile.sgi,
source/mesh/ug/uniformGridII/unitTest/initSolnData.c,
source/mesh/ug/uniformGridII/unitTest/initialize.c,
source/mesh/ug/uniformGridII/unitTest/prepTest.sh,
source/mesh/ug/uniformGridII/unitTest/runTests.sh,
source/particles/Config,
source/particles/InitParticlePositions.F90,
source/particles/InitParticles.F90, source/particles/Makefile,
source/particles/ParticleData.F90,
source/particles/ParticleModule.F90,
source/particles/ParticleTimestep.F90,
source/particles/active/AdvanceParticles.F90,
source/particles/active/Config,
source/particles/active/LongRangeForce.F90,
source/particles/active/Makefile,
source/particles/active/ShortRangeForce.F90,
source/particles/active/long_range/Config,
source/particles/active/long_range/pm/Config,
source/particles/active/long_range/pm/gravity/Config,
source/particles/active/long_range/pm/gravity/LongRangeForce.F90,
source/particles/active/long_range/pm/gravity/Makefile,
source/particles/active/short_range/Config,
source/particles/active/time_integration/Config,
source/particles/active/time_integration/euler/AdvanceParticles.F90
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source/particles/active/time_integration/euler/Makefile,
source/particles/active/time_integration/leapfrog/AdvanceParticles.
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source/particles/active/time_integration/leapfrog/Makefile,
source/particles/active/time_integration/leapfrog_cosmo/AdvancePart
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source/particles/active/time_integration/leapfrog_cosmo/Config,
source/particles/active/time_integration/leapfrog_cosmo/Makefile,
source/particles/communication/CommunicateGlobalTreeData.F90,
source/particles/communication/Makefile,
source/particles/communication/MoveParticles.F90,
source/particles/communication/ParticleBoundaries.F90,
source/particles/communication/ParticleComm.F90,
source/particles/communication/ParticleCommData.F90,
source/particles/communication/ParticleMeshInfo.F90,
source/particles/communication/ParticlesInitCommunicate.F90,
source/particles/communication/ReDistributeParticles.F90,
source/particles/communication/ReStuffArray.F90,
source/particles/communication/SetupMoveParticles.F90,
source/particles/mapping/AssignWeights.F90,
source/particles/mapping/Config, source/particles/mapping/Makefile,
source/particles/mapping/MapMeshToParticles.F90,
source/particles/mapping/MapParticlesToMesh.F90,
source/particles/mapping/MeshToParticle.F90,
source/particles/mapping/ParticleToMesh.F90,
source/particles/mapping/cic/AssignWeights.F90,
source/particles/mapping/cic_1dsph/MeshToParticle.F90,
source/particles/mapping/cic_1dsph/ParticleToMesh.F90,
source/particles/mapping/cic_2dcylaxi/MeshToParticle.F90,
source/particles/mapping/cic_2dcylaxi/ParticleToMesh.F90,
source/particles/mapping/ngp/AssignWeights.F90,
source/particles/mapping/tsc/AssignWeights.F90,
source/particles/null/AdvanceParticles.F90,
source/particles/null/InitParticles.F90,
source/particles/null/MapMeshToParticles.F90,
source/particles/null/MapParticlesToMesh.F90,
source/particles/null/ParticleComm.F90,
source/particles/null/ParticleCommData.F90,
source/particles/null/ParticleTimestep.F90,
source/particles/passive/AdvanceParticles.F90,
source/particles/passive/Config,
source/particles/passive/InitParticlePositions.F90,
source/particles/passive/Makefile, source/radiation/Config,
source/radiation/Makefile, source/radiation/radiationModule.F90,
source/radiation/radiation_diffusion/Config,
source/radiation/radiation_diffusion/Makefile,
source/radiation/radiation_diffusion/amr_diffusion.F90,
source/radiation/radiation_diffusion/fluxlimiter.F,
source/radiation/radiation_diffusion/fluxlimiter_old.F,
source/radiation/radiation_diffusion/radiationModule.F90,
source/radiation/radiation_diffusion/radiation_old.F,
source/radiation/radiation_diffusion/xztrin21.F,
source/radiation/radiation_diffusion/OpalOpacityTables/GN93hz,
source/radiation/radiation_diffusion/OpalOpacityTables/explanation.
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source/radiation/radiation_diffusion/OpalOpacityTables/test.out,
source/radiation/radiation_diffusion/OpalOpacityTables/test_of_xztr
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source/radiation/radiation_diffusion/OpalOpacityTables/xcotrin21.F,
source/radiation/radiation_diffusion/OpalOpacityTables/xcotrin21.f,
source/radiation/radiation_diffusion/OpalOpacityTables/xztrin21.f,
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source/sites/Prototypes/README, source/sites/Prototypes/aclocal.m4,
source/sites/Prototypes/configure,
source/sites/Prototypes/configure.in,
source/sites/Prototypes/AIX/MPI_Wtime.F90,
source/sites/Prototypes/AIX/Makefile.h,
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source/sites/Prototypes/IRIX64/Makefile.h,
source/sites/Prototypes/IRIX64/Makefile.h.in,
source/sites/Prototypes/Linux/Makefile.h,
source/sites/Prototypes/Linux/Makefile.h.ifc,
source/sites/Prototypes/Linux/Makefile.h.in,
source/sites/Prototypes/TFLOPS/Makefile.h,
source/sites/Prototypes/TFLOPS/Makefile.h.hdf5_parallel,
source/sites/Prototypes/TFLOPS/Makefile.h.hdf5_serial,
source/sites/Prototypes/TFLOPS/Makefile.h.hdf5v1.4_parallel,
source/sites/Prototypes/TFLOPS/Makefile.h.in,
source/sites/blue.llnl.gov/Makefile.h,
source/sites/blue.llnl.gov/flashrun,
source/sites/blue.llnl.gov/flashrun.readme,
source/sites/bluehorizon.npaci.edu/Makefile.h,
source/sites/bluehorizon.npaci.edu/flashrun,
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source/sites/cetus.asci.uchicago.edu/Makefile.h,
source/sites/cetus.asci.uchicago.edu/Makefile.h-ifc,
source/sites/cetus.asci.uchicago.edu/Makefile.h-pgf,
source/sites/chiba.mcs.anl.gov/Makefile.h,
source/sites/chiba.mcs.anl.gov/flashrun,
source/sites/chiba.mcs.anl.gov/flashrun.readme,
source/sites/copper.ncsa.uiuc.edu/Makefile.h,
source/sites/cplant.ca.sandia.gov/Makefile.h,
source/sites/cube.asci.uchicago.edu/Makefile.h,
source/sites/flashviz.uchicago.edu/Makefile.h,
source/sites/frost.llnl.gov/Makefile.h,
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source/sites/gin.asci.uchicago.edu/Makefile.h,
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source/sites/gog.as.arizona.edu/Makefile.h,
source/sites/gps01.llnl.gov/Makefile.h,
source/sites/intel_gin.asci.uchicago.edu/Makefile.h,
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source/sites/janus.sandia.gov/Makefile.h,
source/sites/lahey_gin.asci.uchicago.edu/Makefile.h,
source/sites/lahey_gin.asci.uchicago.edu/build.csh,
source/sites/modi4.ncsa.uiuc.edu/Makefile.h,
source/sites/monsun/Makefile.h,
source/sites/nan.ucolick.org/Makefile.h,
source/sites/nirvana.acl.lanl.gov/Makefile.h,
source/sites/platinum.ncsa.uiuc.edu/Makefile.h,
source/sites/platinum.ncsa.uiuc.edu/Makefile.h.mpich-gm,
source/sites/q.ucolick.org/Makefile.h,
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source/sites/sphere.uchicago.edu/Makefile.h,
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source/sites/upsand.ucsc.edu/Makefile.h,
source/sites/wimbley.asci.uchicago.edu/Makefile.h,
source/sites/ziz1.astropa.unipa.it/Makefile.h,
source/sites/zohar.uchicago.edu/Makefile.h, source/solvers/Config,
source/solvers/Makefile, source/solvers/ODE/odepack/Makefile,
source/solvers/ODE/odepack/README,
source/solvers/ODE/odepack/cfode.F90,
source/solvers/ODE/odepack/doc,
source/solvers/ODE/odepack/ewset.F90,
source/solvers/ODE/odepack/intdy.F90,
source/solvers/ODE/odepack/isamax.F90,
source/solvers/ODE/odepack/lsode.F90,
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source/solvers/ODE/odepack/r1mach.F90,
source/solvers/ODE/odepack/saxpy.F90,
source/solvers/ODE/odepack/sdot.F90,
source/solvers/ODE/odepack/sgbfa.F90,
source/solvers/ODE/odepack/sgbsl.F90,
source/solvers/ODE/odepack/sgefa.F90,
source/solvers/ODE/odepack/sgesl.F90,
source/solvers/ODE/odepack/solsy.F90,
source/solvers/ODE/odepack/sscal.F90,
source/solvers/ODE/odepack/stode.F90,
source/solvers/ODE/odepack/test_odepack.F90,
source/solvers/ODE/odepack/vnorm.F90,
source/solvers/ODE/odepack/xerrwv.F90,
source/solvers/ODE/vode/Makefile, source/solvers/ODE/vode/README,
source/solvers/ODE/vode/isamax.F90,
source/solvers/ODE/vode/r1mach.F90,
source/solvers/ODE/vode/saxpy.F90,
source/solvers/ODE/vode/scopy.F90,
source/solvers/ODE/vode/sdot.F90,
source/solvers/ODE/vode/sgbfa.F90,
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source/solvers/ODE/vode/sgefa.F90,
source/solvers/ODE/vode/sgesl.F90,
source/solvers/ODE/vode/sscal.F90,
source/solvers/ODE/vode/svode.F90,
source/solvers/helmholtz/Makefile,
source/solvers/helmholtz/multigrid/Config,
source/solvers/helmholtz/multigrid/Makefile,
source/solvers/helmholtz/multigrid/helmholtz.F90,
source/solvers/helmholtz/multigrid/helmholtz_mg_relax.F90,
source/solvers/helmholtz/multigrid/helmholtz_mg_residual.F90,
source/solvers/helmholtz/multigrid/helmholtz_mg_solve.F90,
source/solvers/helmholtz/multigrid/helmholtz_private.F90,
source/solvers/linalg/ma28/sparse_ma28.F90,
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source/solvers/poisson/poisson.F90,
source/solvers/poisson/hypre_PFMG/Config,
source/solvers/poisson/hypre_PFMG/Makefile,
source/solvers/poisson/hypre_PFMG/hypre_wrapper.c,
source/solvers/poisson/hypre_PFMG/poisson.F90,
source/solvers/poisson/hypre_PFMG/poisson.c,
source/solvers/poisson/multigrid/Config,
source/solvers/poisson/multigrid/Makefile,
source/solvers/poisson/multigrid/poisson.F90,
source/solvers/poisson/multigrid/poisson_image_boundary.F90,
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source/solvers/poisson/multigrid/poisson_mg_residual.F90,
source/solvers/poisson/multigrid/poisson_mg_solve.F90,
source/solvers/poisson/multigrid/fftcg/Makefile,
source/solvers/poisson/multigrid/fftcg/fftsg.f,
source/solvers/poisson/multigrid/fftcg/fftsg2d.f,
source/solvers/poisson/multigrid/fftcg/fftsg3d.f,
source/solvers/poisson/multigrid/fftcg/pois_solve_1d.f90,
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source/solvers/poisson/multigrid/fftcg/poisson_mg_solve.F90,
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source/solvers/poisson/multigrid/isobnd_mpole/compute_mpole_moments
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source/solvers/poisson/multigrid/isobnd_mpole/compute_mpole_potenti
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source/solvers/poisson/multigrid/isobnd_mpole/find_center_of_mass.F
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source/solvers/poisson/multigrid/isobnd_mpole/mpole_common.F90,
source/solvers/poisson/multigrid/isobnd_mpole/poisson_image_boundar
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source/solvers/poisson/multigrid/isobnd_mpole_opt/Config,
source/solvers/poisson/multigrid/isobnd_mpole_opt/Makefile,
source/solvers/poisson/multigrid/isobnd_mpole_opt/compute_mpole_mom
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source/solvers/poisson/multigrid/isobnd_mpole_opt/compute_mpole_pot
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source/solvers/poisson/multigrid/isobnd_mpole_opt/find_center_of_ma
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tools/fui/java.src/Fui$NewProblemEvent.class,
tools/fui/java.src/Fui.class, tools/fui/java.src/Fui.java,
tools/fui/java.src/ModulesChange$AddButtonEvent.class,
tools/fui/java.src/ModulesChange$BackButtonEvent.class,
tools/fui/java.src/ModulesChange$DefaultsRBEvent.class,
tools/fui/java.src/ModulesChange$ExitButtonEvent.class,
tools/fui/java.src/ModulesChange$NextButtonEvent.class,
tools/fui/java.src/ModulesChange$RemoveButtonEvent.class,
tools/fui/java.src/ModulesChange.class,
tools/fui/java.src/ModulesChange.java,
tools/fui/java.src/NewProblemParameterDialog$BackButtonEvent.class,
tools/fui/java.src/NewProblemParameterDialog$ExitButtonEvent.class,
tools/fui/java.src/NewProblemParameterDialog$NextButtonEvent.class,
tools/fui/java.src/NewProblemParameterDialog.class,
tools/fui/java.src/NewProblemParameterDialog.java,
tools/fui/java.src/ParametersChange$AddFieldEvent.class,
tools/fui/java.src/ParametersChange$BackButtonEvent.class,
tools/fui/java.src/ParametersChange$ExitButtonEvent.class,
tools/fui/java.src/ParametersChange$NextButtonEvent.class,
tools/fui/java.src/ParametersChange$ParamNameEvent.class,
tools/fui/java.src/ParametersChange.class,
tools/fui/java.src/ParametersChange.java,
tools/fui/java.src/PostDefaultModules.class,
tools/fui/java.src/PostDefaultModules.java,
tools/fui/java.src/ProblemConfigParse.class,
tools/fui/java.src/ProblemConfigParse.java,
tools/fui/java.src/ProblemName$BackButtonEvent.class,
tools/fui/java.src/ProblemName$ExitButtonEvent.class,
tools/fui/java.src/ProblemName$NextButtonEvent.class,
tools/fui/java.src/ProblemName.class,
tools/fui/java.src/ProblemName.java,
tools/fui/java.src/ProblemSelect$EditButtonEvent.class,
tools/fui/java.src/ProblemSelect$ExecuteButtonEvent.class,
tools/fui/java.src/ProblemSelect$ExitButtonEvent.class,
tools/fui/java.src/ProblemSelect.class,
tools/fui/java.src/ProblemSelect.java,
tools/fui/java.src/RequiredFiles.class,
tools/fui/java.src/RequiredFiles.java,
tools/fui/java.src/SetRequiredModules$AddButtonEvent.class,
tools/fui/java.src/SetRequiredModules$BackButtonEvent.class,
tools/fui/java.src/SetRequiredModules$ExitButtonEvent.class,
tools/fui/java.src/SetRequiredModules$NextButtonEvent.class,
tools/fui/java.src/SetRequiredModules$RemoveButtonEvent.class,
tools/fui/java.src/SetRequiredModules.class,
tools/fui/java.src/SetRequiredModules.java,
tools/fui/java.src/SetupFlags$1.class,
tools/fui/java.src/SetupFlags$BuildButtonEvent.class,
tools/fui/java.src/SetupFlags$DefaultsRBEvent.class,
tools/fui/java.src/SetupFlags$ExitButtonEvent.class,
tools/fui/java.src/SetupFlags$MaxBlocksEvent.class,
tools/fui/java.src/SetupFlags$OneDRBEvent.class,
tools/fui/java.src/SetupFlags$PortableRBEvent.class,
tools/fui/java.src/SetupFlags$RunButtonEvent.class,
tools/fui/java.src/SetupFlags$SetupButtonEvent.class,
tools/fui/java.src/SetupFlags$ThreeDRBEvent.class,
tools/fui/java.src/SetupFlags$TwoDRBEvent.class,
tools/fui/java.src/SetupFlags$VerboseRBEvent.class,
tools/fui/java.src/SetupFlags.class,
tools/fui/java.src/SetupFlags.java,
tools/fui/java.src/SwingWorker$1.class,
tools/fui/java.src/SwingWorker$2.class,
tools/fui/java.src/SwingWorker$ThreadVar.class,
tools/fui/java.src/SwingWorker.class,
tools/fui/java.src/SwingWorker.java,
tools/fui/java.src/TemplateSettings.class,
tools/fui/java.src/TemplateSettings.java,
tools/fui/java.src/WriteModulesFile.class,
tools/fui/java.src/WriteModulesFile.java,
tools/fui/java.src/flashLogo.gif, tools/io_bench/Makefile.blue,
tools/io_bench/Makefile.chiba, tools/io_bench/Makefile.linux,
tools/io_bench/Makefile.seaborg, tools/io_bench/Makefile.sphere,
tools/io_bench/README, tools/io_bench/block_boundary_data.fh,
tools/io_bench/checkpoint_hdf5_parallel.F90,
tools/io_bench/common.fh, tools/io_bench/definitions.fh,
tools/io_bench/flash_benchmark_io.F90,
tools/io_bench/flash_release.f,
tools/io_bench/get_mfluid_property.F90,
tools/io_bench/h5_file_interface.c,
tools/io_bench/h5_parallel_write.c,
tools/io_bench/h5_parallel_write_single.c,
tools/io_bench/hdf5_flash.h, tools/io_bench/numfluids.fh,
tools/io_bench/physicaldata.fh,
tools/io_bench/plotfile_hdf5_parallel.F90, tools/io_bench/tree.fh,
tools/scripts/CreateFlashRelease.java, tools/scripts/FlashStack.py,
tools/scripts/fmkmf.pl, tools/scripts/MakeRelease/Code.rl,
tools/scripts/MakeRelease/CopyCode.pl,
tools/scripts/MakeRelease/MakeRelease.pl,
tools/scripts/MakeRelease/MakeTarFile.pl,
tools/scripts/MakeRelease/ParseInfoPartialDirRelease.pl,
tools/scripts/MakeRelease/ParseInput.pl,
tools/scripts/MakeRelease/README,
tools/scripts/MakeRelease/ReadInRLFile.pl,
tools/scripts/MakeRelease/RemoveCVSDirs.pl,
tools/scripts/MakeRelease/ReportRelease.pl,
tools/scripts/MakeRelease/Setups.rl,
tools/scripts/MakeRelease/cvs2cl.pl,
tools/scripts/MakeRelease/printHelp.pl,
tools/scripts/MakeRelease/printUsage.pl,
tools/scripts/MakeRelease/release.pl,
tools/scripts/coding_standards/CodingStandardsTests.py,
tools/scripts/coding_standards/README,
tools/scripts/coding_standards/acc,
tools/scripts/coding_standards/chkCodingStandards.py,
tools/scripts/coding_standards/isFixed.py,
tools/scripts/coding_standards/postCodingStandards.scr,
tools/scripts/coding_standards/html/HTMLgen/Formtools.py,
tools/scripts/coding_standards/html/HTMLgen/GifImagePluginH.py,
tools/scripts/coding_standards/html/HTMLgen/HTML.rc,
tools/scripts/coding_standards/html/HTMLgen/HTMLcalendar.py,
tools/scripts/coding_standards/html/HTMLgen/HTMLcolors.py,
tools/scripts/coding_standards/html/HTMLgen/HTMLgen.py,
tools/scripts/coding_standards/html/HTMLgen/HTMLgen.pyc,
tools/scripts/coding_standards/html/HTMLgen/HTMLgen.rc,
tools/scripts/coding_standards/html/HTMLgen/HTMLtest.py,
tools/scripts/coding_standards/html/HTMLgen/HTMLutil.py,
tools/scripts/coding_standards/html/HTMLgen/ImageFileH.py,
tools/scripts/coding_standards/html/HTMLgen/ImageH.py,
tools/scripts/coding_standards/html/HTMLgen/ImageH.pyc,
tools/scripts/coding_standards/html/HTMLgen/ImagePaletteH.py,
tools/scripts/coding_standards/html/HTMLgen/ImagePaletteH.pyc,
tools/scripts/coding_standards/html/HTMLgen/JpegImagePluginH.py,
tools/scripts/coding_standards/html/HTMLgen/Makefile,
tools/scripts/coding_standards/html/HTMLgen/NavLinks.py,
tools/scripts/coding_standards/html/HTMLgen/PngImagePluginH.py,
tools/scripts/coding_standards/html/HTMLgen/README,
tools/scripts/coding_standards/html/HTMLgen/StickyForm.py,
tools/scripts/coding_standards/html/HTMLgen/appt.txt,
tools/scripts/coding_standards/html/HTMLgen/barchart.py,
tools/scripts/coding_standards/html/HTMLgen/cgiapp.py,
tools/scripts/coding_standards/html/HTMLgen/colorcube.py,
tools/scripts/coding_standards/html/HTMLgen/imgfix.py,
tools/scripts/coding_standards/html/HTMLgen/imgsize.py,
tools/scripts/coding_standards/html/HTMLgen/imgsize.pyc,
tools/scripts/coding_standards/html/HTMLgen/installp.py,
tools/scripts/eos_changes/AddDeclaration.py,
tools/scripts/eos_changes/ChangeEOS.py,
tools/scripts/eos_changes/ChangePrototype.py,
tools/scripts/eos_changes/README,
tools/scripts/eos_changes/add_entropy.csh,
tools/scripts/jobs/blocksVsTime.py, tools/scripts/jobs/restart,
tools/scripts/jobs/tstepVsTime.py,
tools/scripts/robodoc/findRobodocedFiles.py,
tools/scripts/robodoc/makeRobodocDocs.py,
tools/scripts/robodoc/robodocFLASH.sh,
tools/scripts/statistics/codeStats.pl,
tools/scripts/statistics/cvsstats,
tools/scripts/statistics/f_mod_index.pl,
tools/scripts/statistics/postCvsStats.scr,
tools/scripts/testing/find_untested_files.scr,
tools/scripts/testing/list_files.scr,
tools/scripts/testing/check_make/CheckMake,
tools/scripts/testing/check_make/CheckMake.driver.all,
tools/scripts/testing/check_make/CheckMake.pl,
tools/scripts/testing/check_make/F_ModuleDb.pm,
tools/scripts/testing/check_make/MakeEvaluate.pm,
tools/scripts/testing/check_make/MakeReader.pm,
tools/scripts/testing/check_make/README,
tools/scripts/testing/check_make/SourceReader.pm,
tools/scripts/testing/check_make/UPrinter.pm,
tools/scripts/testing/check_make/checkmake.config,
tools/scripts/testing/precision_test/precision_test.F90,
tools/scripts/text_formatting/ConvertSuffixes,
tools/scripts/text_formatting/FFlushLeftComments.class,
tools/scripts/text_formatting/FFlushLeftComments.java,
tools/scripts/text_formatting/convert.f90,
tools/scripts/text_formatting/convert.pl,
tools/scripts/text_formatting/findLine,
tools/scripts/text_formatting/fixFComments.driver,
tools/scripts/text_formatting/fixFComments.pm,
tools/scripts/text_formatting/ftof90.c,
tools/scripts/text_formatting/ftof90.py,
tools/scripts/text_formatting/ftof90.scr,
tools/sfocu/Makefile.bluehorizon, tools/sfocu/Makefile.chiba,
tools/sfocu/Makefile.cube, tools/sfocu/Makefile.flash,
tools/sfocu/Makefile.flashviz, tools/sfocu/Makefile.gin,
tools/sfocu/Makefile.gps, tools/sfocu/Makefile.monsun,
tools/sfocu/Makefile.sphere, tools/sfocu/README,
tools/sfocu/flash_reader.c, tools/sfocu/flash_reader.h,
tools/sfocu/flash_reader_hdf4.c, tools/sfocu/flash_reader_hdf5.c,
tools/sfocu/main.c, tools/sfocu/sfocu.c, tools/sfocu/test_reader.c:
Imported sources from 2.3