From woitke at strw.leidenuniv.nl  Thu Feb  5 02:22:10 2004
From: woitke at strw.leidenuniv.nl (Peter Woitke)
Date: Thu, 5 Feb 2004 09:22:10 +0100 (MET)
Subject: [FLASH-BUGS] EOS=0 species with PPM 
Message-ID: <Pine.LNX.4.58.0402050912080.18759@berkel.strw.leidenuniv.nl>

Dear developers,

I think there is a bug in FLASH2.3 concerning EOS=0 species, in
/flash/source/hydro/explicit/split/ppm/hydro_1d.F90, lines 368-387:
The abundances are renormalised here without checking the EOS-property
(the marked lines were not there) ...

    do i = 1, nzn8

       sum = 0.e0

       do n = 1, ionmax
          if (EOSweight(n) > 0.1) then    ! changed PW
             xnav(i,n) = max(smallx, min(1.0, xnav(i,n)))
             sum = sum + xnav(i,n)
          endif
       enddo

       suminv = 1.e0/sum

       do n = 1, ionmax
          if (EOSweight(n) > 0.1) then    ! changed PW
             xnav(i,n) = max(smallx, min(1.e0, xnav(i,n)*suminv))
          endif
       enddo

    enddo

Whithout this fix, I got very strange results. I used these "species" for
the purpose to introduce other physical variables which need to be
advected, too. These values of these variables can be arbitrarily large,
e.g. 100. You can imagine what happened in the above loops ...

Have fun,

Peter Woitke




From tomek at flash.uchicago.edu  Thu Feb  5 08:47:30 2004
From: tomek at flash.uchicago.edu (Tomasz Plewa)
Date: Thu, 5 Feb 2004 08:47:30 -0600
Subject: [FLASH-BUGS] EOS=0 species with PPM
In-Reply-To: <Pine.LNX.4.58.0402050912080.18759@berkel.strw.leidenuniv.nl>; from woitke@strw.leidenuniv.nl on Thu, Feb 05, 2004 at 09:22:10AM +0100
References: <Pine.LNX.4.58.0402050912080.18759@berkel.strw.leidenuniv.nl>
Message-ID: <20040205084730.B1571@flash.uchicago.edu>

Peter -

Thank you for this bug report.

This problem would actually be masked in FLASH2.4 where, despite
introduction of volume scalars which satisfy properies of your newly
introduced variables as explained by Natasha yesterday, it still is
implicitly assumed that the first ionamx species are real components
of the gas and contribute to the equation of state.

We will modify the code following your suggestions.

Best -

Tomek
--
On Thu, Feb 05, 2004 at 09:22:10AM +0100, Peter Woitke wrote:
> Dear developers,
> 
> I think there is a bug in FLASH2.3 concerning EOS=0 species, in
> /flash/source/hydro/explicit/split/ppm/hydro_1d.F90, lines 368-387:
> The abundances are renormalised here without checking the EOS-property
> (the marked lines were not there) ...
> 
>     do i = 1, nzn8
> 
>        sum = 0.e0
> 
>        do n = 1, ionmax
>           if (EOSweight(n) > 0.1) then    ! changed PW
>              xnav(i,n) = max(smallx, min(1.0, xnav(i,n)))
>              sum = sum + xnav(i,n)
>           endif
>        enddo
> 
>        suminv = 1.e0/sum
> 
>        do n = 1, ionmax
>           if (EOSweight(n) > 0.1) then    ! changed PW
>              xnav(i,n) = max(smallx, min(1.e0, xnav(i,n)*suminv))
>           endif
>        enddo
> 
>     enddo
> 
> Whithout this fix, I got very strange results. I used these "species" for
> the purpose to introduce other physical variables which need to be
> advected, too. These values of these variables can be arbitrarily large,
> e.g. 100. You can imagine what happened in the above loops ...
> 
> Have fun,
> 
> Peter Woitke
> 

-- 


From CreativeMarketingTeam at att.net  Mon Feb  9 02:30:08 2004
From: CreativeMarketingTeam at att.net (Creative Marketing Team)
Date: Mon, 9 Feb 2004 02:30:08 -0600 (CST)
Subject: [FLASH-BUGS] Lists: Teachers - Media - Libraries - Bookstores - Churches - Healthcare <more>
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From mail26 at ecom-universe.net  Wed Feb 11 22:32:21 2004
From: mail26 at ecom-universe.net (mail26 at ecom-universe.net)
Date: Wed, 11 Feb 2004 22:32:21 -0600
Subject: [FLASH-BUGS] 1 Stop Shop For Home Loans v vknb 
Message-ID: <r83-5420k$246-$61@q22zzdv>

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From mail13 at ecom-universe.net  Fri Feb 13 12:27:54 2004
From: mail13 at ecom-universe.net (mail13 at ecom-universe.net)
Date: Fri, 13 Feb 2004 12:27:54 -0600
Subject: [FLASH-BUGS] Get the interest rate you've been looking for    sz g  d
Message-ID: <g$$087x0dtwvi$0n5t-wy$$fkm@2dt5.ca8n85xz>

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From XZTQCZ at msn.com  Sun Feb 15 22:33:54 2004
From: XZTQCZ at msn.com (Jon Wall)
Date: Mon, 16 Feb 2004 01:33:54 -0300
Subject: [FLASH-BUGS] Penetrate like A MEATIER
Message-ID: <VAJIRVAZWSNGUJOPJULSTYP@yahoo.com>

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From UPBEKI at yahoo.com  Sun Feb 15 22:35:23 2004
From: UPBEKI at yahoo.com (Catalina Elkins)
Date: Mon, 16 Feb 2004 03:35:23 -0100
Subject: [FLASH-BUGS] Penetrate like A MEATIER
Message-ID: <IMEHKUJUMBAOAZIWOGPU@msn.com>

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From ZOGOMCZQXSCPKT at hotmail.com  Mon Feb 16 01:30:03 2004
From: ZOGOMCZQXSCPKT at hotmail.com (Israel Allison)
Date: Mon, 16 Feb 2004 05:30:03 -0200
Subject: [FLASH-BUGS] Split Her In Two
Message-ID: <QPWFTZIYJBRIVTQFESBYTN@msn.com>

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From cymsy at msn.com  Mon Feb 16 01:55:26 2004
From: cymsy at msn.com (Linwood Gregory)
Date: Mon, 16 Feb 2004 05:55:26 -0200
Subject: [FLASH-BUGS] Stop Dreaming, Make It Happen
Message-ID: <BCRYFEVQGJGHNWPUAPYJGRVXL@yahoo.com>

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From jbgallag at flash.uchicago.edu  Tue Feb 24 13:13:55 2004
From: jbgallag at flash.uchicago.edu (JB Gallagher)
Date: Tue, 24 Feb 2004 13:13:55 -0600
Subject: [FLASH-BUGS] spherical symmetry II
Message-ID: <403BA273.2020509@flash.uchicago.edu>

Dear developers,

as I wrote in my email from 5. Februar, I think there is a bug in FLASH2.3
concerning the use of 1d spherical coordinates (spherical symmetry).


>> ./setup sedov_sph -1d -auto
>> make
>  
>

produces code which crashes in
source/mesh/amr/paramesh2.0/quadratic_spherical/amr_prolong_gen_unk_fun.F90.
There is a loop around line number 440, starting with


>> do j = 1, 2*nguard+nyb
>  
>

the variables ypl,ypr,yp,dyp are changed here with index j = 1 to 9.
However, they are defined as scalars for ndim=1. As consequence, myGeom is
overwritten (set to CARTESIAN) which leads to an abort.

Can you reproduce this error? The same error occurs in my application of
flash, so it is an urgent problem for me.

Please help,

Peter

-- 
Brad Gallagher
ASCI Flash Center
jbgallag at flash.uchicago.edu




From jbgallag at flash.uchicago.edu  Tue Feb 24 13:14:23 2004
From: jbgallag at flash.uchicago.edu (JB Gallagher)
Date: Tue, 24 Feb 2004 13:14:23 -0600
Subject: [FLASH-BUGS] spherical symmetry III
Message-ID: <403BA28F.6030601@flash.uchicago.edu>

Dear developers,

a simple cure for my problem seems to be to add the *k2d multiplier
in line 441 of
source/mesh/amr/paramesh2.0/quadratic_spherical/amr_prolong_gen_unk_fun.F90

  !do j = 1, 2*nguard+nyb
  do j = 1, 2*nguard*k2d+nyb                        ! changed PW 24.2.2004

The results look reasonable, at least. But I don't know the background
here and there might be more problems with the prolongation in the 1d
spherical case.

Regards,

Peter

-- 
Brad Gallagher
ASCI Flash Center
jbgallag at flash.uchicago.edu




From jbgallag at flash.uchicago.edu  Tue Feb 24 13:27:23 2004
From: jbgallag at flash.uchicago.edu (JB Gallagher)
Date: Tue, 24 Feb 2004 13:27:23 -0600
Subject: [Fwd: Re: [FLASH-BUGS] spherical symmetry III]
Message-ID: <403BA59B.2050307@flash.uchicago.edu>


-- 
Brad Gallagher
ASCI Flash Center
jbgallag at flash.uchicago.edu

-------------- next part --------------
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Subject: Re: [FLASH-BUGS] spherical symmetry III
Date: Tue, 24 Feb 2004 13:25:22 -0600
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From woitke at strw.leidenuniv.nl  Thu Feb  5 02:22:10 2004
From: woitke at strw.leidenuniv.nl (Peter Woitke)
Date: Thu, 5 Feb 2004 09:22:10 +0100 (MET)
Subject: [FLASH-BUGS] EOS=0 species with PPM 
Message-ID: <Pine.LNX.4.58.0402050912080.18759@berkel.strw.leidenuniv.nl>

Dear developers,

I think there is a bug in FLASH2.3 concerning EOS=0 species, in
/flash/source/hydro/explicit/split/ppm/hydro_1d.F90, lines 368-387:
The abundances are renormalised here without checking the EOS-property
(the marked lines were not there) ...

    do i = 1, nzn8

       sum = 0.e0

       do n = 1, ionmax
          if (EOSweight(n) > 0.1) then    ! changed PW
             xnav(i,n) = max(smallx, min(1.0, xnav(i,n)))
             sum = sum + xnav(i,n)
          endif
       enddo

       suminv = 1.e0/sum

       do n = 1, ionmax
          if (EOSweight(n) > 0.1) then    ! changed PW
             xnav(i,n) = max(smallx, min(1.e0, xnav(i,n)*suminv))
          endif
       enddo

    enddo

Whithout this fix, I got very strange results. I used these "species" for
the purpose to introduce other physical variables which need to be
advected, too. These values of these variables can be arbitrarily large,
e.g. 100. You can imagine what happened in the above loops ...

Have fun,

Peter Woitke




From tomek at flash.uchicago.edu  Thu Feb  5 08:47:30 2004
From: tomek at flash.uchicago.edu (Tomasz Plewa)
Date: Thu, 5 Feb 2004 08:47:30 -0600
Subject: [FLASH-BUGS] EOS=0 species with PPM
In-Reply-To: <Pine.LNX.4.58.0402050912080.18759@berkel.strw.leidenuniv.nl>; from woitke@strw.leidenuniv.nl on Thu, Feb 05, 2004 at 09:22:10AM +0100
References: <Pine.LNX.4.58.0402050912080.18759@berkel.strw.leidenuniv.nl>
Message-ID: <20040205084730.B1571@flash.uchicago.edu>

Peter -

Thank you for this bug report.

This problem would actually be masked in FLASH2.4 where, despite
introduction of volume scalars which satisfy properies of your newly
introduced variables as explained by Natasha yesterday, it still is
implicitly assumed that the first ionamx species are real components
of the gas and contribute to the equation of state.

We will modify the code following your suggestions.

Best -

Tomek
--
On Thu, Feb 05, 2004 at 09:22:10AM +0100, Peter Woitke wrote:
> Dear developers,
> 
> I think there is a bug in FLASH2.3 concerning EOS=0 species, in
> /flash/source/hydro/explicit/split/ppm/hydro_1d.F90, lines 368-387:
> The abundances are renormalised here without checking the EOS-property
> (the marked lines were not there) ...
> 
>     do i = 1, nzn8
> 
>        sum = 0.e0
> 
>        do n = 1, ionmax
>           if (EOSweight(n) > 0.1) then    ! changed PW
>              xnav(i,n) = max(smallx, min(1.0, xnav(i,n)))
>              sum = sum + xnav(i,n)
>           endif
>        enddo
> 
>        suminv = 1.e0/sum
> 
>        do n = 1, ionmax
>           if (EOSweight(n) > 0.1) then    ! changed PW
>              xnav(i,n) = max(smallx, min(1.e0, xnav(i,n)*suminv))
>           endif
>        enddo
> 
>     enddo
> 
> Whithout this fix, I got very strange results. I used these "species" for
> the purpose to introduce other physical variables which need to be
> advected, too. These values of these variables can be arbitrarily large,
> e.g. 100. You can imagine what happened in the above loops ...
> 
> Have fun,
> 
> Peter Woitke
> 

-- 


From CreativeMarketingTeam at att.net  Mon Feb  9 02:30:08 2004
From: CreativeMarketingTeam at att.net (Creative Marketing Team)
Date: Mon, 9 Feb 2004 02:30:08 -0600 (CST)
Subject: [FLASH-BUGS] Lists: Teachers - Media - Libraries - Bookstores - Churches - Healthcare <more>
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From mail26 at ecom-universe.net  Wed Feb 11 22:32:21 2004
From: mail26 at ecom-universe.net (mail26 at ecom-universe.net)
Date: Wed, 11 Feb 2004 22:32:21 -0600
Subject: [FLASH-BUGS] 1 Stop Shop For Home Loans v vknb 
Message-ID: <r83-5420k$246-$61@q22zzdv>

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From mail13 at ecom-universe.net  Fri Feb 13 12:27:54 2004
From: mail13 at ecom-universe.net (mail13 at ecom-universe.net)
Date: Fri, 13 Feb 2004 12:27:54 -0600
Subject: [FLASH-BUGS] Get the interest rate you've been looking for    sz g  d
Message-ID: <g$$087x0dtwvi$0n5t-wy$$fkm@2dt5.ca8n85xz>

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From XZTQCZ at msn.com  Sun Feb 15 22:33:54 2004
From: XZTQCZ at msn.com (Jon Wall)
Date: Mon, 16 Feb 2004 01:33:54 -0300
Subject: [FLASH-BUGS] Penetrate like A MEATIER
Message-ID: <VAJIRVAZWSNGUJOPJULSTYP@yahoo.com>

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From UPBEKI at yahoo.com  Sun Feb 15 22:35:23 2004
From: UPBEKI at yahoo.com (Catalina Elkins)
Date: Mon, 16 Feb 2004 03:35:23 -0100
Subject: [FLASH-BUGS] Penetrate like A MEATIER
Message-ID: <IMEHKUJUMBAOAZIWOGPU@msn.com>

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From ZOGOMCZQXSCPKT at hotmail.com  Mon Feb 16 01:30:03 2004
From: ZOGOMCZQXSCPKT at hotmail.com (Israel Allison)
Date: Mon, 16 Feb 2004 05:30:03 -0200
Subject: [FLASH-BUGS] Split Her In Two
Message-ID: <QPWFTZIYJBRIVTQFESBYTN@msn.com>

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From cymsy at msn.com  Mon Feb 16 01:55:26 2004
From: cymsy at msn.com (Linwood Gregory)
Date: Mon, 16 Feb 2004 05:55:26 -0200
Subject: [FLASH-BUGS] Stop Dreaming, Make It Happen
Message-ID: <BCRYFEVQGJGHNWPUAPYJGRVXL@yahoo.com>

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From jbgallag at flash.uchicago.edu  Tue Feb 24 13:13:55 2004
From: jbgallag at flash.uchicago.edu (JB Gallagher)
Date: Tue, 24 Feb 2004 13:13:55 -0600
Subject: [FLASH-BUGS] spherical symmetry II
Message-ID: <403BA273.2020509@flash.uchicago.edu>

Dear developers,

as I wrote in my email from 5. Februar, I think there is a bug in FLASH2.3
concerning the use of 1d spherical coordinates (spherical symmetry).


>> ./setup sedov_sph -1d -auto
>> make
>  
>

produces code which crashes in
source/mesh/amr/paramesh2.0/quadratic_spherical/amr_prolong_gen_unk_fun.F90.
There is a loop around line number 440, starting with


>> do j = 1, 2*nguard+nyb
>  
>

the variables ypl,ypr,yp,dyp are changed here with index j = 1 to 9.
However, they are defined as scalars for ndim=1. As consequence, myGeom is
overwritten (set to CARTESIAN) which leads to an abort.

Can you reproduce this error? The same error occurs in my application of
flash, so it is an urgent problem for me.

Please help,

Peter

-- 
Brad Gallagher
ASCI Flash Center
jbgallag at flash.uchicago.edu




From jbgallag at flash.uchicago.edu  Tue Feb 24 13:14:23 2004
From: jbgallag at flash.uchicago.edu (JB Gallagher)
Date: Tue, 24 Feb 2004 13:14:23 -0600
Subject: [FLASH-BUGS] spherical symmetry III
Message-ID: <403BA28F.6030601@flash.uchicago.edu>

Dear developers,

a simple cure for my problem seems to be to add the *k2d multiplier
in line 441 of
source/mesh/amr/paramesh2.0/quadratic_spherical/amr_prolong_gen_unk_fun.F90

  !do j = 1, 2*nguard+nyb
  do j = 1, 2*nguard*k2d+nyb                        ! changed PW 24.2.2004

The results look reasonable, at least. But I don't know the background
here and there might be more problems with the prolongation in the 1d
spherical case.

Regards,

Peter

-- 
Brad Gallagher
ASCI Flash Center
jbgallag at flash.uchicago.edu




From jbgallag at flash.uchicago.edu  Tue Feb 24 13:27:23 2004
From: jbgallag at flash.uchicago.edu (JB Gallagher)
Date: Tue, 24 Feb 2004 13:27:23 -0600
Subject: [Fwd: Re: [FLASH-BUGS] spherical symmetry III]
Message-ID: <403BA59B.2050307@flash.uchicago.edu>


-- 
Brad Gallagher
ASCI Flash Center
jbgallag at flash.uchicago.edu

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Subject: Re: [FLASH-BUGS] spherical symmetry III
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